Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c1_1570 Physcomitrium patens HOM05D004391 ORTHO05D005193 2.2e-37 158.3 73 100.0
Pp3c11_2590 Physcomitrium patens HOM05D004391 ORTHO05D005193 1.1e-36 156.0 73 98.6
Pp3c7_21160 Physcomitrium patens HOM05D004391 ORTHO05D005193 1.1e-36 156.0 73 98.6
AagrBONN_evm.TU.Sc2ySwM_362.2485 Anthoceros agrestis HOM05D004391 ORTHO05D005193 1.4e-23 112.5 73 67.1
CBR_g1035 Chara braunii HOM05D004391 ORTHO05D005193 4.5e-22 107.5 73 63.0
Pp3c13_7360 Physcomitrium patens HOM05D004391 ORTHO05D005193 1.0e-21 106.3 73 64.4
THA.LOC104816504 Tarenaya hassleriana HOM05D004391 ORTHO05D005193 1.7e-21 105.5 73 61.6
THA.LOC109117202 Tarenaya hassleriana HOM05D004391 ORTHO05D005193 3.8e-21 104.4 73 61.6
Duzib114G0048 Durio zibethinus HOM05D004391 ORTHO05D005193 5.0e-21 104.0 73 60.3
Eucgr.G03166 Eucalyptus grandis HOM05D004391 ORTHO05D005193 6.6e-21 103.6 73 60.3
Nn5g27585 Nelumbo nucifera HOM05D004391 ORTHO05D005193 6.6e-21 103.6 73 60.3
Manes.18G125100 Manihot esculenta HOM05D004391 ORTHO05D005193 1.1e-20 102.8 73 60.3
Nn5g26793 Nelumbo nucifera HOM05D004391 ORTHO05D005193 1.1e-20 102.8 73 60.3
Duzib128G1816 Durio zibethinus HOM05D004391 ORTHO05D005193 1.5e-20 102.4 73 58.9
HPP92_003137 Vanilla planifolia HOM05D004391 ORTHO05D005193 3.3e-20 101.3 73 61.6
Carub.0006s0430 Capsella rubella HOM05D004391 ORTHO05D005193 4.2e-20 100.9 73 57.5
ClCG08G017940 Citrullus lanatus HOM05D004391 ORTHO05D005193 4.2e-20 100.9 73 58.9
TAR369G0568 Trochodendron aralioides HOM05D004391 ORTHO05D005193 4.2e-20 100.9 73 58.9
AT3G10860 Arabidopsis thaliana HOM05D004391 ORTHO05D005193 5.5e-20 100.5 73 58.9
Carub.0003s1010 Capsella rubella HOM05D004391 ORTHO05D005193 5.5e-20 100.5 73 58.9
Cpa.g.sc2.267 Carica papaya HOM05D004391 ORTHO05D005193 5.5e-20 100.5 73 58.9
THA.LOC104823167 Tarenaya hassleriana HOM05D004391 ORTHO05D005193 5.5e-20 100.5 73 57.5
BolC1t05350H Brassica oleracea HOM05D004391 ORTHO05D005193 7.2e-20 100.1 73 57.5
BraA01t04219Z Brassica rapa HOM05D004391 ORTHO05D005193 7.2e-20 100.1 73 57.5
CARHR085430 Cardamine hirsuta HOM05D004391 ORTHO05D005193 7.2e-20 100.1 73 58.9
Haze_12207 Corylus avellana HOM05D004391 ORTHO05D005193 7.2e-20 100.1 73 60.3
Thhalv10021877m.g Eutrema salsugineum HOM05D004391 ORTHO05D005193 7.2e-20 100.1 73 57.5
Gohir.D13G008800 Gossypium hirsutum HOM05D004391 ORTHO05D005193 7.2e-20 100.1 73 56.2
AL6G15270 Arabidopsis lyrata HOM05D004391 ORTHO05D005193 9.5e-20 99.8 73 57.5
AT5G05370 Arabidopsis thaliana HOM05D004391 ORTHO05D005193 9.5e-20 99.8 73 57.5
BcaC06g32250 Brassica carinata HOM05D004391 ORTHO05D005193 9.5e-20 99.8 73 56.2
A05p38380 Brassica napus HOM05D004391 ORTHO05D005193 9.5e-20 99.8 73 57.5
A10p30830 Brassica napus HOM05D004391 ORTHO05D005193 9.5e-20 99.8 73 56.2
C05p57280 Brassica napus HOM05D004391 ORTHO05D005193 9.5e-20 99.8 73 57.5
C09p71330 Brassica napus HOM05D004391 ORTHO05D005193 9.5e-20 99.8 73 56.2
BolC5t34384H Brassica oleracea HOM05D004391 ORTHO05D005193 9.5e-20 99.8 73 57.5
BolC9t59895H Brassica oleracea HOM05D004391 ORTHO05D005193 9.5e-20 99.8 73 56.2
BraA05t22629Z Brassica rapa HOM05D004391 ORTHO05D005193 9.5e-20 99.8 73 57.5
BraA10t45125Z Brassica rapa HOM05D004391 ORTHO05D005193 9.5e-20 99.8 73 56.2
Thhalv10015196m.g Eutrema salsugineum HOM05D004391 ORTHO05D005193 9.5e-20 99.8 73 57.5
HPP92_000080 Vanilla planifolia HOM05D004391 ORTHO05D005193 9.5e-20 99.8 71 60.6
BcaB01g05713 Brassica carinata HOM05D004391 ORTHO05D005193 1.2e-19 99.4 73 56.2
Gohir.A05G404700 Gossypium hirsutum HOM05D004391 ORTHO05D005193 1.2e-19 99.4 73 54.8
Peaxi162Scf00131g10129 Petunia axillaris HOM05D004391 ORTHO05D005193 1.2e-19 99.4 73 57.5
Sp6g37450 Schrenkiella parvula HOM05D004391 ORTHO05D005193 1.2e-19 99.4 73 56.2
Sp6g37680 Schrenkiella parvula HOM05D004391 ORTHO05D005193 1.2e-19 99.4 73 54.8
TAR633G0676 Trochodendron aralioides HOM05D004391 ORTHO05D005193 1.2e-19 99.4 72 58.3
Thhalv10015197m.g Eutrema salsugineum HOM05D004391 ORTHO05D005193 1.6e-19 99.0 73 54.8
FvH4_3g40960 Fragaria vesca HOM05D004391 ORTHO05D005193 1.6e-19 99.0 73 60.3
FAN11G0346 Fragaria x ananassa HOM05D004391 ORTHO05D005193 1.6e-19 99.0 73 60.3
FAN16G3113 Fragaria x ananassa HOM05D004391 ORTHO05D005193 1.6e-19 99.0 73 60.3
Gohir.A13G008200 Gossypium hirsutum HOM05D004391 ORTHO05D005193 1.6e-19 99.0 73 56.2
Potri.019G132000 Populus trichocarpa HOM05D004391 ORTHO05D005193 1.6e-19 99.0 73 58.9
GSVIVG01024232001 Vitis vinifera HOM05D004391 ORTHO05D005193 1.6e-19 99.0 73 56.2
LjContig00141g0006354 Lotus japonicus HOM05D004391 ORTHO05D005193 2.1e-19 98.6 73 58.9
PGR142G4161 Punica granatum HOM05D004391 ORTHO05D005193 2.1e-19 98.6 73 56.2
Sp3g09180 Schrenkiella parvula HOM05D004391 ORTHO05D005193 2.1e-19 98.6 73 56.2
Thecc.10G186500 Theobroma cacao HOM05D004391 ORTHO05D005193 2.1e-19 98.6 73 56.2
Aa31LG3G3850 Aethionema arabicum HOM05D004391 ORTHO05D005193 2.8e-19 98.2 73 57.5
AL3G22380 Arabidopsis lyrata HOM05D004391 ORTHO05D005193 2.8e-19 98.2 73 57.5
Gohir.D04G011000 Gossypium hirsutum HOM05D004391 ORTHO05D005193 2.8e-19 98.2 73 54.8
Nitab4.5_0000311g0070 Nicotiana tabacum HOM05D004391 ORTHO05D005193 2.8e-19 98.2 73 58.9
Peaxi162Scf00455g00003 Petunia axillaris HOM05D004391 ORTHO05D005193 2.8e-19 98.2 73 57.5
RcHm_v2.0_Chr5g0073771 Rosa chinensis HOM05D004391 ORTHO05D005193 2.8e-19 98.2 73 58.9
Aa31LG11G6460 Aethionema arabicum HOM05D004391 ORTHO05D005193 3.6e-19 97.8 73 54.8
Nitab4.5_0000105g0300 Nicotiana tabacum HOM05D004391 ORTHO05D005193 3.6e-19 97.8 73 57.5
CARHR207860 Cardamine hirsuta HOM05D004391 ORTHO05D005193 4.7e-19 97.4 73 54.8
Nitab4.5_0003194g0030 Nicotiana tabacum HOM05D004391 ORTHO05D005193 4.7e-19 97.4 73 57.5
Os06g0175900 Oryza sativa ssp. japonica HOM05D004391 ORTHO05D005193 4.7e-19 97.4 73 61.6
Os06g0177000 Oryza sativa ssp. japonica HOM05D004391 ORTHO05D005193 4.7e-19 97.4 73 61.6
Solyc06g007540.3 Solanum lycopersicum HOM05D004391 ORTHO05D005193 4.7e-19 97.4 73 58.9
Sopen06g002450 Solanum pennellii HOM05D004391 ORTHO05D005193 4.7e-19 97.4 73 58.9
Ah.05g177740 Amaranthus hybridus HOM05D004391 ORTHO05D005193 6.1e-19 97.1 73 57.5
A03p02270 Brassica napus HOM05D004391 ORTHO05D005193 6.1e-19 97.1 73 54.8
CSS0038074 Camellia sinensis var. sinensis HOM05D004391 ORTHO05D005193 6.1e-19 97.1 73 56.2
Prupe.6G038800 Prunus persica HOM05D004391 ORTHO05D005193 6.1e-19 97.1 73 57.5
GSVIVG01024535001 Vitis vinifera HOM05D004391 ORTHO05D005193 6.1e-19 97.1 73 54.8
Cc01_g15470 Coffea canephora HOM05D004391 ORTHO05D005193 8.0e-19 96.7 73 57.5
FAN25G0672 Fragaria x ananassa HOM05D004391 ORTHO05D000090 8.0e-19 96.7 70 61.4
Mapoly0022s0089 Marchantia polymorpha HOM05D004391 ORTHO05D005193 8.0e-19 96.7 67 62.7
Sc15g0002370 Simmondsia chinensis HOM05D004391 ORTHO05D005193 8.0e-19 96.7 73 57.5
TPR.G7542 Trifolium pratense HOM05D004391 ORTHO05D005193 8.0e-19 96.7 73 57.5
unitig_747.g21439 Utricularia gibba HOM05D001024 ORTHO05D000878 8.0e-19 96.7 73 57.5
Zm00001eb375180 Zea mays HOM05D004391 ORTHO05D005193 8.0e-19 96.7 73 60.3
Cfa009172 Carpinus fangiana HOM05D004391 ORTHO05D005193 1.0e-18 96.3 73 57.5
CiPaw.05G185700 Carya illinoinensis HOM05D004391 ORTHO05D005193 1.0e-18 96.3 73 56.2
Oeu025053.1 Olea europaea HOM05D004391 ORTHO05D005193 1.0e-18 96.3 73 57.5
COL.COLO4_19488 Corchorus olitorius HOM05D004391 ORTHO05D005193 1.4e-18 95.9 73 57.5
FAN21G2439 Fragaria x ananassa HOM05D004391 ORTHO05D005193 1.4e-18 95.9 72 58.3
ECA236G4577 Erigeron canadensis HOM05D004391 ORTHO05D005193 1.8e-18 95.5 73 54.8
TWI09G0083 Tripterygium wilfordii HOM05D004391 ORTHO05D005193 1.8e-18 95.5 73 56.2
Dinv12291 Davidia involucrata HOM05D000139 ORTHO05D000103 2.3e-18 95.1 72 56.9
Gorai.012G013200 Gossypium raimondii HOM05D004391 ORTHO05D005193 2.3e-18 95.1 70 52.9
TWI53G1180 Tripterygium wilfordii HOM05D004391 ORTHO05D005193 2.3e-18 95.1 73 56.2
CSS0036971 Camellia sinensis var. sinensis HOM05D004391 ORTHO05D005193 4.0e-18 94.4 73 53.4
CAN.G181.27 Capsicum annuum HOM05D004391 ORTHO05D005193 4.0e-18 94.4 73 56.2
Ciclev10013576m.g Citrus clementina HOM05D004391 ORTHO05D005193 4.0e-18 94.4 73 54.8
Solyc06g082680.4 Solanum lycopersicum HOM05D004391 ORTHO05D005193 4.0e-18 94.4 73 54.8
Sopen06g034070 Solanum pennellii HOM05D004391 ORTHO05D005193 4.0e-18 94.4 73 54.8
CAN.G874.64 Capsicum annuum HOM05D004391 ORTHO05D005193 5.2e-18 94.0 73 53.4
AUR62013781 Chenopodium quinoa HOM05D004391 ORTHO05D005193 5.2e-18 94.0 73 56.2
Ciclev10033444m.g Citrus clementina HOM05D004391 ORTHO05D005193 5.2e-18 94.0 73 54.8
MELO3C010670.2 Cucumis melo HOM05D004391 ORTHO05D005193 5.2e-18 94.0 73 53.4
MD03G1047800 Malus domestica HOM05D004391 ORTHO05D005193 5.2e-18 94.0 73 54.8
Ciclev10010097m.g Citrus clementina HOM05D004391 ORTHO05D005193 6.8e-18 93.6 73 54.8
FvH4_4g32870 Fragaria vesca HOM05D004391 ORTHO05D005193 6.8e-18 93.6 73 54.8
FAN12G3281 Fragaria x ananassa HOM05D004391 ORTHO05D005193 6.8e-18 93.6 73 54.8
HanXRQChr10g0292911 Helianthus annuus HOM05D004391 ORTHO05D005193 6.8e-18 93.6 73 53.4
RcHm_v2.0_Chr4g0441891 Rosa chinensis HOM05D004391 ORTHO05D005193 8.9e-18 93.2 73 54.8
PGSC0003DMG400030477 Solanum tuberosum HOM05D004391 ORTHO05D005193 8.9e-18 93.2 73 53.4
arahy.Tifrunner.gnm1.ann1.M2MMUV Arachis hypogaea HOM05D004391 ORTHO05D005193 1.2e-17 92.8 73 56.2
AUR62023375 Chenopodium quinoa HOM05D004391 ORTHO05D005193 1.2e-17 92.8 73 56.2
CANSAT80G1344 Cannabis sativa HOM05D004391 ORTHO05D005193 2.0e-17 92.0 73 54.8
Medtr5g075690 Medicago truncatula HOM05D004391 ORTHO05D005193 2.0e-17 92.0 70 57.1
Phvul.008G244100 Phaseolus vulgaris HOM05D004391 ORTHO05D005193 2.0e-17 92.0 73 56.2
FAN07G1869 Fragaria x ananassa HOM05D004391 ORTHO05D005193 2.6e-17 91.7 73 53.4
FAN17G0118 Fragaria x ananassa HOM05D004391 ORTHO05D005193 2.6e-17 91.7 73 53.4
FAN22G1549 Fragaria x ananassa HOM05D004391 ORTHO05D005193 2.6e-17 91.7 73 53.4
Glyma.02G237700 Glycine max HOM05D004391 ORTHO05D005193 2.6e-17 91.7 73 56.2
Glyma.14G206700 Glycine max HOM05D004391 ORTHO05D005193 2.6e-17 91.7 73 56.2
Aqoxy2G00689 Aquilegia oxysepala HOM05D004391 ORTHO05D005193 3.4e-17 91.3 73 56.2
HanXRQChr05g0158631 Helianthus annuus HOM05D004391 ORTHO05D005193 3.4e-17 91.3 73 50.7
Lsat_1_v5_gn_5_177220 Lactuca sativa HOM05D004391 ORTHO05D005193 3.4e-17 91.3 73 50.7
ECA248G3374 Erigeron canadensis HOM05D004391 ORTHO05D005193 4.4e-17 90.9 73 50.7
Lalb_Chr10g0103971 Lupinus albus HOM05D004391 ORTHO05D005193 4.4e-17 90.9 73 53.4
MD13G1094500 Malus domestica HOM05D004391 ORTHO05D005193 4.4e-17 90.9 73 53.4
MD16G1095600 Malus domestica HOM05D004391 ORTHO05D005193 5.7e-17 90.5 73 53.4
Sed0004860 Sechium edule HOM05D004391 ORTHO05D005193 9.8e-17 89.7 73 52.1
Hma1.2p1_0170F.1_g075340 Hydrangea macrophylla HOM05D004391 ORTHO05D005193 1.3e-16 89.4 73 53.4
Lalb_Chr04g0251641 Lupinus albus HOM05D004391 ORTHO05D005193 1.3e-16 89.4 73 50.7
Prupe.1G250900 Prunus persica HOM05D004391 ORTHO05D005193 1.3e-16 89.4 73 53.4
Aa31LG3G4110 Aethionema arabicum HOM05D004391 ORTHO05D005193 3.7e-16 87.8 94 44.7
Migut.D00804 Erythranthe guttata HOM05D004391 ORTHO05D005193 1.8e-15 85.5 73 50.7
QL03p059558 Quercus lobata HOM05D004391 ORTHO05D005193 3.2e-15 84.7 94 45.7
Mapoly0036s0032 Marchantia polymorpha HOM05D004391 ORTHO05D005193 1.6e-14 82.4 71 52.1
FvH4_4g07960 Fragaria vesca HOM05D004391 ORTHO05D005193 2.0e-14 82.0 73 50.7
Nitab4.5_0002167g0040 Nicotiana tabacum HOM05D004391 ORTHO05D005193 2.0e-14 82.0 68 51.5
SalBow3G4275 Salvia bowleyana HOM05D004391 ORTHO05D005193 1.3e-13 79.3 103 39.8
THA.LOC104823179 Tarenaya hassleriana HOM05D004391 ORTHO05D005193 1.3e-13 79.3 56 58.9
Gorai.013G009600 Gossypium raimondii HOM05D004391 ORTHO05D005193 2.3e-13 78.6 63 50.8
Nitab4.5_0002902g0130 Nicotiana tabacum HOM05D004391 ORTHO05D005193 3.9e-13 77.8 56 58.9
vmacro02862 Vaccinium macrocarpon HOM05D004391 ORTHO05D005193 5.0e-13 77.4 58 56.9
Zm00001eb281780 Zea mays HOM05D004391 ORTHO05D005193 6.6e-13 77.0 56 58.9
CsaV3_2G024700 Cucumis sativus L. HOM05D004391 ORTHO05D005193 8.6e-13 76.6 70 47.1
PGSC0003DMG400020649 Solanum tuberosum HOM05D004391 ORTHO05D005193 1.1e-12 76.3 56 57.1
Lsat_1_v5_gn_9_13380 Lactuca sativa HOM05D000838 ORTHO05D000656 1.9e-12 75.5 59 54.2
Potri.013G159700 Populus trichocarpa HOM05D004391 ORTHO05D005193 2.5e-12 75.1 56 57.1
MCO15G410 Micromonas commoda HOM05D004391 ORTHO05D005193 9.5e-12 73.2 74 52.7
BcaB04g21171 Brassica carinata HOM05D004391 ORTHO05D005193 1.2e-11 72.8 51 56.9
VMungo0647G0523 Vigna mungo HOM05D004391 ORTHO05D005193 1.2e-11 72.8 56 57.1
SEGI_31881 Sequoiadendron giganteum HOM05D004391 ORTHO05D005193 3.6e-11 71.2 54 51.9
SHI19278 Sapria himalayana HOM05D004391 ORTHO05D005193 1.0e-10 69.7 56 51.8
SGA_v2.0_scaffold122G33334 Striga asiatica HOM05D004391 ORTHO05D005193 2.3e-10 68.6 61 49.2
Lsat_1_v5_gn_8_98921 Lactuca sativa HOM05D004391 ORTHO05D005193 3.1e-10 68.2 56 53.6
Lsat_1_v5_gn_8_98901 Lactuca sativa HOM05D004391 ORTHO05D005193 8.9e-10 66.6 52 53.8
Lsat_1_v5_gn_9_13340 Lactuca sativa HOM05D004391 ORTHO05D005193 1.5e-09 65.9 52 51.9
BolC2t06197H Brassica oleracea HOM05D004391 ORTHO05D005193 5.8e-09 63.9 70 44.3
PRCOL_00006067 Prasinoderma coloniale HOM05D004391 ORTHO05D005193 2.9e-08 61.6 73 41.1
SMO117G0077 Selaginella moellendorffii HOM05D004391 ORTHO05D005193 8.3e-08 60.1 70 41.4
SGA_v2.0_scaffold129G34161 Striga asiatica HOM05D004391 ORTHO05D005193 1.4e-07 59.3 53 49.1
C02p02320 Brassica napus HOM05D004391 ORTHO05D005193 2.4e-07 58.5 66 43.9
DCAR_018583 Daucus carota HOM05D004391 ORTHO05D005193 3.2e-07 58.2 55 43.6
EL10Ac1g00726 Beta vulgaris HOM05D004391 ORTHO05D005193 5.4e-07 57.4 37 64.9
DCAR_023068 Daucus carota HOM05D004391 ORTHO05D005193 1.6e-06 55.8 74 40.5


User provided reference genes

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