Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c1_15300 Physcomitrium patens HOM05D006702 ORTHO05D008540 2.6e-58 228.4 109 100.0
Pp3c18_4750 Physcomitrium patens HOM05D006702 ORTHO05D008540 1.2e-21 106.7 89 55.1
Duzib106G0264 Durio zibethinus HOM05D006702 ORTHO05D008540 9.8e-21 103.6 89 51.7
AagrBONN_evm.TU.Sc2ySwM_362.139 Anthoceros agrestis HOM05D006702 ORTHO05D008540 1.7e-20 102.8 93 52.7
Gohir.D04G110501 Gossypium hirsutum HOM05D006702 ORTHO05D008540 4.9e-20 101.3 89 50.6
Mapoly0013s0202 Marchantia polymorpha HOM05D006702 ORTHO05D008540 8.3e-20 100.5 87 54.0
ClCG04G009300 Citrullus lanatus HOM05D006702 ORTHO05D008540 1.1e-19 100.1 97 46.4
Gohir.A04G072000 Gossypium hirsutum HOM05D006702 ORTHO05D008540 1.1e-19 100.1 89 50.6
Lj5g0016847 Lotus japonicus HOM05D006702 ORTHO05D008540 1.1e-19 100.1 93 49.5
VMungo0720G0934 Vigna mungo HOM05D006702 ORTHO05D008540 1.8e-19 99.4 90 51.1
GSVIVG01025733001 Vitis vinifera HOM05D006702 ORTHO05D008540 1.8e-19 99.4 96 46.9
CSS0007009 Camellia sinensis var. sinensis HOM05D006702 ORTHO05D008540 2.4e-19 99.0 98 45.9
MELO3C024465.2 Cucumis melo HOM05D006702 ORTHO05D008540 2.4e-19 99.0 97 46.4
Phvul.007G219250 Phaseolus vulgaris HOM05D006702 ORTHO05D008540 3.1e-19 98.6 93 50.5
Gorai.006G163300 Gossypium raimondii HOM05D006702 ORTHO05D008540 5.4e-19 97.8 89 49.4
Sed0024166 Sechium edule HOM05D006702 ORTHO05D008540 5.4e-19 97.8 106 44.3
Sc02g0001610 Simmondsia chinensis HOM05D006702 ORTHO05D008540 5.4e-19 97.8 86 51.2
Eucgr.K02933 Eucalyptus grandis HOM05D006702 ORTHO05D008540 7.0e-19 97.4 90 50.0
Gorai.009G414600 Gossypium raimondii HOM05D006702 ORTHO05D008540 7.0e-19 97.4 89 49.4
QL07p043331 Quercus lobata HOM05D006702 ORTHO05D008540 7.0e-19 97.4 86 50.0
QL07p043496 Quercus lobata HOM05D006702 ORTHO05D008540 7.0e-19 97.4 86 50.0
THA.LOC104823233 Tarenaya hassleriana HOM05D006702 ORTHO05D008540 7.0e-19 97.4 91 48.4
CANSAT80G0135 Cannabis sativa HOM05D006702 ORTHO05D008540 9.2e-19 97.1 91 47.3
Haze_20544 Corylus avellana HOM05D006702 ORTHO05D008540 9.2e-19 97.1 88 50.0
Gohir.D09G142300 Gossypium hirsutum HOM05D006702 ORTHO05D008540 9.2e-19 97.1 89 48.3
Duzib128G1950 Durio zibethinus HOM05D006702 ORTHO05D008540 1.2e-18 96.7 85 50.6
Hma1.2p1_0205F.1_g087030 Hydrangea macrophylla HOM05D006702 ORTHO05D008540 1.2e-18 96.7 84 50.0
PGR142G4417 Punica granatum HOM05D006702 ORTHO05D008540 1.2e-18 96.7 99 47.5
SMO137G0384 Selaginella moellendorffii HOM05D006702 ORTHO05D008540 1.2e-18 96.7 84 53.6
C03p01460 Brassica napus HOM05D006702 ORTHO05D008540 1.6e-18 96.3 94 45.7
CsaV3_6G039890 Cucumis sativus L. HOM05D006702 ORTHO05D008540 1.6e-18 96.3 97 45.4
Gohir.A09G146600 Gossypium hirsutum HOM05D006702 ORTHO05D008540 1.6e-18 96.3 89 48.3
Solyc09g008190.3 Solanum lycopersicum HOM05D006702 ORTHO05D008540 1.6e-18 96.3 98 45.9
Sopen09g002990 Solanum pennellii HOM05D006702 ORTHO05D008540 1.6e-18 96.3 98 45.9
EL10Ac7g16628 Beta vulgaris HOM05D006702 ORTHO05D008540 2.0e-18 95.9 93 48.4
Carub.0006s0219 Capsella rubella HOM05D006702 ORTHO05D008540 2.0e-18 95.9 94 45.7
CiPaw.10G130200 Carya illinoinensis HOM05D006702 ORTHO05D008540 2.0e-18 95.9 88 46.6
Haze_20547 Corylus avellana HOM05D006702 ORTHO05D008540 2.0e-18 95.9 86 51.2
Lj2P122T8 Lonicera japonica HOM05D006702 ORTHO05D008540 2.0e-18 95.9 84 50.0
CiPaw.10G130000 Carya illinoinensis HOM05D006702 ORTHO05D008540 3.5e-18 95.1 86 47.7
Lalb_Chr06g0171741 Lupinus albus HOM05D006702 ORTHO05D008540 4.5e-18 94.7 93 44.1
Sp6g39370 Schrenkiella parvula HOM05D006702 ORTHO05D008540 4.5e-18 94.7 91 46.2
Aa31LG1G21770 Aethionema arabicum HOM05D006702 ORTHO05D008540 5.9e-18 94.4 94 44.7
Migut.L01703 Erythranthe guttata HOM05D006702 ORTHO05D008540 7.8e-18 94.0 99 47.5
Nitab4.5_0008928g0010 Nicotiana tabacum HOM05D006702 ORTHO05D008540 7.8e-18 94.0 102 46.1
Atru.chr8.1809 Acer truncatum HOM05D006702 ORTHO05D008540 1.0e-17 93.6 78 53.8
Ciclev10012549m.g Citrus clementina HOM05D006702 ORTHO05D008540 1.0e-17 93.6 85 50.6
FvH4_6g16390 Fragaria vesca HOM05D006702 ORTHO05D008540 1.0e-17 93.6 87 48.3
FAN14G1896 Fragaria x ananassa HOM05D006702 ORTHO05D008540 1.0e-17 93.6 87 48.3
Nn2g13794 Nelumbo nucifera HOM05D006702 ORTHO05D008540 1.0e-17 93.6 87 49.4
Nn2g13797 Nelumbo nucifera HOM05D006702 ORTHO05D008540 1.0e-17 93.6 87 49.4
Nitab4.5_0000578g0200 Nicotiana tabacum HOM05D006702 ORTHO05D008540 1.0e-17 93.6 102 46.1
PSO339G3061 Papaver somniferum HOM05D006702 ORTHO05D008540 1.0e-17 93.6 86 47.7
RcHm_v2.0_Chr3g0470251 Rosa chinensis HOM05D006702 ORTHO05D008540 1.0e-17 93.6 89 47.2
TWI77G0937 Tripterygium wilfordii HOM05D006702 ORTHO05D008540 1.0e-17 93.6 90 50.0
Glyma.13G142500 Glycine max HOM05D006702 ORTHO05D008540 1.3e-17 93.2 96 46.9
Manes.09G067614 Manihot esculenta HOM05D006702 ORTHO05D008540 1.3e-17 93.2 93 45.2
Potri.016G093000 Populus trichocarpa HOM05D006702 ORTHO05D008540 1.3e-17 93.2 93 45.2
Prupe.6G232200 Prunus persica HOM05D006702 ORTHO05D008540 1.3e-17 93.2 100 42.0
AT5G03370 Arabidopsis thaliana HOM05D006702 ORTHO05D008540 1.7e-17 92.8 94 44.7
CAN.G900.34 Capsicum annuum HOM05D006702 ORTHO05D008540 1.7e-17 92.8 98 46.9
AL6G12700 Arabidopsis lyrata HOM05D006702 ORTHO05D008540 2.3e-17 92.4 94 44.7
BcaB01g05844 Brassica carinata HOM05D006702 ORTHO05D008540 2.3e-17 92.4 94 44.7
BolC3t12702H Brassica oleracea HOM05D006702 ORTHO05D008540 2.3e-17 92.4 94 44.7
AUR62040349 Chenopodium quinoa HOM05D006702 ORTHO05D008540 2.3e-17 92.4 84 51.2
MD04G1093600 Malus domestica HOM05D006702 ORTHO05D008540 2.3e-17 92.4 90 45.6
PGSC0003DMG400003886 Solanum tuberosum HOM05D006702 ORTHO05D008540 2.3e-17 92.4 98 44.9
Thecc.05G066700 Theobroma cacao HOM05D006702 ORTHO05D008540 2.3e-17 92.4 89 47.2
Cpa.g.sc54.80 Carica papaya HOM05D006702 ORTHO05D008540 2.9e-17 92.0 77 54.5
ATR0171G014 Amborella trichopoda HOM05D006702 ORTHO05D008540 3.8e-17 91.7 84 51.2
BraA03t09496Z Brassica rapa HOM05D006702 ORTHO05D008540 3.8e-17 91.7 94 43.6
CiPaw.09G172500 Carya illinoinensis HOM05D006702 ORTHO05D008540 3.8e-17 91.7 86 48.8
FAN05G3937 Fragaria x ananassa HOM05D006702 ORTHO05D008540 3.8e-17 91.7 89 46.1
Oeu045060.1 Olea europaea HOM05D006702 ORTHO05D008540 3.8e-17 91.7 87 47.1
Ca_11502_v3 Cicer arietinum L. HOM05D006702 ORTHO05D008540 5.0e-17 91.3 95 46.3
TWI53G0904 Tripterygium wilfordii HOM05D006702 ORTHO05D008540 5.0e-17 91.3 93 46.2
Actinidia32493 Actinidia chinensis HOM05D006702 ORTHO05D008540 6.6e-17 90.9 98 44.9
A03p01140 Brassica napus HOM05D000070 ORTHO05D001255 6.6e-17 90.9 94 43.6
SEGI_37807 Sequoiadendron giganteum HOM05D006702 ORTHO05D008540 6.6e-17 90.9 77 54.5
TAR369G0293 Trochodendron aralioides HOM05D006702 ORTHO05D008540 6.6e-17 90.9 88 47.7
Aqoxy2G01772 Aquilegia oxysepala HOM05D006702 ORTHO05D008540 8.6e-17 90.5 74 55.4
CAN.G900.33 Capsicum annuum HOM05D006702 ORTHO05D008540 8.6e-17 90.5 91 50.5
ECA233G1636 Erigeron canadensis HOM05D006702 ORTHO05D008540 8.6e-17 90.5 96 45.8
Lalb_Chr24g0398871 Lupinus albus HOM05D006702 ORTHO05D008540 8.6e-17 90.5 90 45.6
Pp3c5_16270 Physcomitrium patens HOM05D006702 ORTHO05D008540 8.6e-17 90.5 85 48.2
TPR.G11275 Trifolium pratense HOM05D006702 ORTHO05D008540 8.6e-17 90.5 77 51.9
AUR62042500 Chenopodium quinoa HOM05D006702 ORTHO05D008540 1.1e-16 90.1 80 51.2
Thhalv10003274m.g Eutrema salsugineum HOM05D006702 ORTHO05D008540 1.5e-16 89.7 91 44.0
MSTRG.10321 Avicennia marina HOM05D006702 ORTHO05D008540 1.9e-16 89.4 92 44.6
Sabra16G0098200 Salix brachista HOM05D006702 ORTHO05D008540 1.9e-16 89.4 96 44.8
arahy.Tifrunner.gnm1.ann1.C2LQEN Arachis hypogaea HOM05D006702 ORTHO05D008540 2.5e-16 89.0 83 50.6
arahy.Tifrunner.gnm1.ann1.NQ6TBI Arachis hypogaea HOM05D006702 ORTHO05D008540 2.5e-16 89.0 83 50.6
CARHR209960 Cardamine hirsuta HOM05D006702 ORTHO05D008540 2.5e-16 89.0 82 48.8
SGA_v2.0_scaffold224G42945 Striga asiatica HOM05D006702 ORTHO05D008540 2.5e-16 89.0 89 46.1
Hund25533 Selenicereus undatus HOM05D006702 ORTHO05D008540 3.3e-16 88.6 83 49.4
DCAR_020817 Daucus carota HOM05D006702 ORTHO05D008540 4.3e-16 88.2 96 42.7
Nitab4.5_0008928g0020 Nicotiana tabacum HOM05D006702 ORTHO05D008540 7.3e-16 87.4 80 52.5
DCAR_014995 Daucus carota HOM05D006702 ORTHO05D008540 1.2e-15 86.7 86 48.8
AagrBONN_evm.TU.Sc2ySwM_368.2290 Anthoceros agrestis HOM05D006702 ORTHO05D008540 1.6e-15 86.3 83 49.4
Psat6g074160 Pisum sativum HOM05D006702 ORTHO05D008540 1.6e-15 86.3 93 44.1
CDE05G1201 Ceratophyllum demersum HOM05D006702 ORTHO05D008540 2.1e-15 85.9 88 46.6
Cc06_g04220 Coffea canephora HOM05D006702 ORTHO05D008540 2.1e-15 85.9 87 43.7
Thhalv10014711m.g Eutrema salsugineum HOM05D006702 ORTHO05D008540 3.6e-15 85.1 82 45.1
Thhalv10029095m.g Eutrema salsugineum HOM05D006702 ORTHO05D008540 3.6e-15 85.1 82 45.1
Medtr1g063240 Medicago truncatula HOM05D006702 ORTHO05D008540 8.0e-15 84.0 77 49.4
Lsat_1_v5_gn_6_25081 Lactuca sativa HOM05D006702 ORTHO05D008540 1.4e-14 83.2 98 41.8
Peaxi162Scf01139g00005 Petunia axillaris HOM05D006702 ORTHO05D008540 5.2e-14 81.3 73 53.4
CARHR118060 Cardamine hirsuta HOM05D006702 ORTHO05D008540 1.2e-13 80.1 71 49.3
unitig_0.g683 Utricularia gibba HOM05D006702 ORTHO05D008540 1.2e-13 80.1 61 54.1
Zm00001eb380050 Zea mays HOM05D006702 ORTHO05D008540 7.5e-13 77.4 99 43.4
Os06g0264700 Oryza sativa ssp. japonica HOM05D006702 ORTHO05D008540 4.9e-12 74.7 72 50.0
CDE05G1088 Ceratophyllum demersum HOM05D006702 ORTHO05D008540 1.5e-08 63.2 63 50.8
Zm00001eb380040 Zea mays HOM05D006702 ORTHO05D008540 2.5e-08 62.4 79 41.8
Potri.006G124966 Populus trichocarpa HOM05D006702 ORTHO05D008540 1.2e-07 60.1 79 38.0


User provided reference genes

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