Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c1_1330 Physcomitrium patens HOM05D004659 ORTHO05D005547 1.5e-108 396.4 222 100.0
Pp3c2_35950 Physcomitrium patens HOM05D004659 ORTHO05D005547 3.6e-94 348.6 226 88.5
Mapoly0115s0051 Marchantia polymorpha HOM05D004659 ORTHO05D005547 1.5e-68 263.5 216 72.2
PSO384G3929 Papaver somniferum HOM05D004659 ORTHO05D005547 5.5e-63 245.0 183 74.3
PSO339G6228 Papaver somniferum HOM05D004659 ORTHO05D005547 1.6e-62 243.4 179 75.4
Aqoxy4G03156 Aquilegia oxysepala HOM05D004659 ORTHO05D005547 2.1e-62 243.0 188 70.2
CDE02G4355 Ceratophyllum demersum HOM05D002697 ORTHO05D005547 8.0e-62 241.1 180 74.4
Rhsim03G0135900 Rhododendron simsii HOM05D004659 ORTHO05D005547 3.0e-61 239.2 180 65.0
Thecc.10G065300 Theobroma cacao HOM05D004659 ORTHO05D005547 3.0e-61 239.2 179 73.2
AagrBONN_evm.TU.Sc2ySwM_228.2422 Anthoceros agrestis HOM05D004659 ORTHO05D005547 5.2e-61 238.4 209 65.6
CDE09G1094 Ceratophyllum demersum HOM05D004659 ORTHO05D005547 5.2e-61 238.4 179 74.3
DCAR_019149 Daucus carota HOM05D004659 ORTHO05D005547 5.2e-61 238.4 185 69.7
TAR369G1054 Trochodendron aralioides HOM05D004659 ORTHO05D005547 5.2e-61 238.4 184 72.8
Nitab4.5_0004104g0080 Nicotiana tabacum HOM05D004659 ORTHO05D005547 8.8e-61 237.7 186 65.1
Atru.chr12.612 Acer truncatum HOM05D004659 ORTHO05D005547 1.5e-60 236.9 180 65.6
SMO239G0117 Selaginella moellendorffii HOM05D004659 ORTHO05D005547 2.0e-60 236.5 177 75.7
TWI38G0010 Tripterygium wilfordii HOM05D004659 ORTHO05D005547 2.0e-60 236.5 180 68.9
Potri.010G215900 Populus trichocarpa HOM05D004659 ORTHO05D005547 2.6e-60 236.1 179 64.2
ATR0594G228 Amborella trichopoda HOM05D004659 ORTHO05D005547 3.4e-60 235.7 179 73.7
Nitab4.5_0000691g0220 Nicotiana tabacum HOM05D004659 ORTHO05D005547 3.4e-60 235.7 186 64.5
Sabra10G0166900 Salix brachista HOM05D004659 ORTHO05D005547 3.4e-60 235.7 179 64.8
COL.COLO4_23776 Corchorus olitorius HOM05D004659 ORTHO05D005547 4.4e-60 235.3 178 73.0
QL08p057255 Quercus lobata HOM05D004659 ORTHO05D005547 5.7e-60 235.0 179 73.7
Gohir.D05G298600 Gossypium hirsutum HOM05D004659 ORTHO05D005547 7.5e-60 234.6 179 63.7
Gorai.009G315800 Gossypium raimondii HOM05D004659 ORTHO05D005547 7.5e-60 234.6 179 63.7
Nn2g10610 Nelumbo nucifera HOM05D004659 ORTHO05D005547 9.8e-60 234.2 177 74.0
THA.LOC104827313 Tarenaya hassleriana HOM05D004659 ORTHO05D005547 9.8e-60 234.2 180 65.0
MELO3C011720.2 Cucumis melo HOM05D004659 ORTHO05D005547 1.3e-59 233.8 179 70.4
CsaV3_5G006380 Cucumis sativus L. HOM05D004659 ORTHO05D005547 1.3e-59 233.8 179 70.4
Peaxi162Scf00195g00083 Petunia axillaris HOM05D004659 ORTHO05D005547 1.3e-59 233.8 183 63.9
Gohir.A05G298900 Gossypium hirsutum HOM05D004659 ORTHO05D005547 1.7e-59 233.4 185 61.6
CSS0038055 Camellia sinensis var. sinensis HOM05D004659 ORTHO05D005547 2.2e-59 233.0 178 65.2
CiPaw.02G177400 Carya illinoinensis HOM05D004659 ORTHO05D005547 2.2e-59 233.0 179 64.8
Ciclev10032705m.g Citrus clementina HOM05D004659 ORTHO05D005547 2.2e-59 233.0 190 70.5
ECA232G1287 Erigeron canadensis HOM05D004659 ORTHO05D005547 2.2e-59 233.0 180 72.2
Nn8g38769 Nelumbo nucifera HOM05D004659 ORTHO05D005547 2.2e-59 233.0 179 72.6
Cpa.g.sc1.279 Carica papaya HOM05D004659 ORTHO05D005547 2.8e-59 232.6 180 67.8
Cfa013817 Carpinus fangiana HOM05D004659 ORTHO05D005547 2.8e-59 232.6 179 70.4
ClCG02G013790 Citrullus lanatus HOM05D004659 ORTHO05D005547 2.8e-59 232.6 179 68.2
Haze_22491 Corylus avellana HOM05D004659 ORTHO05D005547 4.9e-59 231.9 179 71.5
Manes.07G069200 Manihot esculenta HOM05D004659 ORTHO05D005547 4.9e-59 231.9 178 68.0
Potri.008G045800 Populus trichocarpa HOM05D004659 ORTHO05D005547 4.9e-59 231.9 179 63.1
CARHR199930 Cardamine hirsuta HOM05D004659 ORTHO05D005547 6.3e-59 231.5 181 63.5
MBI05_g34749_MAGBIO Magnolia biondii HOM05D004659 ORTHO05D005547 6.3e-59 231.5 183 69.9
PGR031G1734 Punica granatum HOM05D004659 ORTHO05D005547 6.3e-59 231.5 193 62.2
THA.LOC104799364 Tarenaya hassleriana HOM05D004659 ORTHO05D005547 6.3e-59 231.5 180 63.3
arahy.Tifrunner.gnm1.ann1.23T474 Arachis hypogaea HOM05D004659 ORTHO05D005547 8.3e-59 231.1 180 62.8
BraA02t05172Z Brassica rapa HOM05D004659 ORTHO05D005547 8.3e-59 231.1 181 68.5
Duzib106G0066 Durio zibethinus HOM05D004659 ORTHO05D005547 8.3e-59 231.1 179 67.6
AL6G24130 Arabidopsis lyrata HOM05D004659 ORTHO05D005547 1.1e-58 230.7 181 63.0
BolC2t06562H Brassica oleracea HOM05D004659 ORTHO05D005547 1.1e-58 230.7 181 69.1
Carub.0006s1167 Capsella rubella HOM05D004659 ORTHO05D005547 1.1e-58 230.7 181 67.4
Sabra08G0032100 Salix brachista HOM05D004659 ORTHO05D005547 1.1e-58 230.7 179 63.1
BcaNung01889 Brassica carinata HOM05D004659 ORTHO05D005547 1.4e-58 230.3 181 68.5
C02p06210 Brassica napus HOM05D004659 ORTHO05D005547 1.4e-58 230.3 181 68.5
CAN.G186.30 Capsicum annuum HOM05D004659 ORTHO05D005547 1.4e-58 230.3 179 63.7
AT5G13510 Arabidopsis thaliana HOM05D004659 ORTHO05D005547 1.8e-58 229.9 181 62.4
Thhalv10014625m.g Eutrema salsugineum HOM05D004659 ORTHO05D005547 2.4e-58 229.6 181 68.5
Cc09_g02380 Coffea canephora HOM05D004659 ORTHO05D005547 3.1e-58 229.2 179 69.8
vmacro04881 Vaccinium macrocarpon HOM05D004659 ORTHO05D005547 3.1e-58 229.2 177 63.8
BcaC04g19111 Brassica carinata HOM05D004659 ORTHO05D005547 5.4e-58 228.4 180 65.6
A10p24760 Brassica napus HOM05D004659 ORTHO05D005547 5.4e-58 228.4 180 68.3
C09p63590 Brassica napus HOM05D004659 ORTHO05D005547 5.4e-58 228.4 180 68.3
BolC9t59202H Brassica oleracea HOM05D004659 ORTHO05D005547 5.4e-58 228.4 180 65.6
BraA10t44539Z Brassica rapa HOM05D004659 ORTHO05D005547 5.4e-58 228.4 180 68.3
Sp6g30510 Schrenkiella parvula HOM05D004659 ORTHO05D005547 5.4e-58 228.4 181 68.0
Solyc04g009540.1 Solanum lycopersicum HOM05D004659 ORTHO05D005547 5.4e-58 228.4 179 63.7
Sopen04g004700 Solanum pennellii HOM05D004659 ORTHO05D005547 5.4e-58 228.4 179 63.7
PGSC0003DMG400032570 Solanum tuberosum HOM05D004659 ORTHO05D005547 7.0e-58 228.0 186 61.8
BcaNung01147 Brassica carinata HOM05D004659 ORTHO05D005547 9.2e-58 227.6 181 68.5
Hma1.2p1_2685F.1_g326920 Hydrangea macrophylla HOM05D004659 ORTHO05D005547 9.2e-58 227.6 180 62.2
Sed0009994 Sechium edule HOM05D004659 ORTHO05D005547 9.2e-58 227.6 179 67.0
MD10G1183400 Malus domestica HOM05D004659 ORTHO05D005547 1.2e-57 227.3 179 69.3
HanXRQChr09g0247171 Helianthus annuus HOM05D004659 ORTHO05D005547 1.6e-57 226.9 179 70.9
MD05G1196100 Malus domestica HOM05D004659 ORTHO05D005547 1.6e-57 226.9 179 69.3
Prupe.8G222500 Prunus persica HOM05D004659 ORTHO05D005547 1.6e-57 226.9 180 68.9
CANSAT35G1484 Cannabis sativa HOM05D004659 ORTHO05D005547 2.0e-57 226.5 180 66.7
FvH4_2g21340 Fragaria vesca HOM05D004659 ORTHO05D005547 2.7e-57 226.1 185 68.6
FAN24G1009 Fragaria x ananassa HOM05D004659 ORTHO05D005547 2.7e-57 226.1 185 68.6
Ah.10g033100 Amaranthus hybridus HOM05D004659 ORTHO05D005547 3.5e-57 225.7 179 65.9
Lsat_1_v5_gn_9_66541 Lactuca sativa HOM05D004659 ORTHO05D005547 3.5e-57 225.7 180 70.0
Lj1P926T21 Lonicera japonica HOM05D004659 ORTHO05D005547 4.5e-57 225.3 178 61.8
VMungo0464G0639 Vigna mungo HOM05D004659 ORTHO05D005547 4.5e-57 225.3 195 56.9
Lj4g0017760 Lotus japonicus HOM05D004659 ORTHO05D005547 5.9e-57 224.9 180 68.3
Medtr4g131540 Medicago truncatula HOM05D004659 ORTHO05D005547 1.0e-56 224.2 179 59.8
Oeu017240.1 Olea europaea HOM05D004659 ORTHO05D005547 1.3e-56 223.8 180 60.6
Sc09g0006840 Simmondsia chinensis HOM05D004659 ORTHO05D005547 1.3e-56 223.8 179 65.4
Ca_21106_v3 Cicer arietinum L. HOM05D004659 ORTHO05D005547 1.7e-56 223.4 180 59.4
Psat4g007600 Pisum sativum HOM05D004659 ORTHO05D005547 1.7e-56 223.4 179 60.3
Zm00001eb013020 Zea mays HOM05D004659 ORTHO05D005547 1.7e-56 223.4 202 64.4
Phvul.004G002100 Phaseolus vulgaris HOM05D004659 ORTHO05D005547 2.3e-56 223.0 189 56.6
Zm00001eb397230 Zea mays HOM05D004659 ORTHO05D005547 2.3e-56 223.0 197 65.5
Aa31sc127G30 Aethionema arabicum HOM05D004659 ORTHO05D005547 2.9e-56 222.6 200 57.0
Lalb_Chr07g0179691 Lupinus albus HOM05D004659 ORTHO05D005547 2.9e-56 222.6 180 68.9
SalBow4G3080 Salvia bowleyana HOM05D004659 ORTHO05D005547 2.9e-56 222.6 179 60.9
unitig_46.g18586 Utricularia gibba HOM05D004659 ORTHO05D005547 2.9e-56 222.6 180 63.3
Os03g0284400 Oryza sativa ssp. japonica HOM05D004659 ORTHO05D005547 5.0e-56 221.9 186 65.6
RcHm_v2.0_Chr6g0287931 Rosa chinensis HOM05D004659 ORTHO05D005547 6.6e-56 221.5 178 70.8
SGA_v2.0_scaffold62G21448 Striga asiatica HOM05D004659 ORTHO05D005547 6.6e-56 221.5 178 60.1
MSTRG.9197 Avicennia marina HOM05D004659 ORTHO05D005547 8.6e-56 221.1 179 62.0
Glyma.17G075900 Glycine max HOM05D004659 ORTHO05D005547 2.5e-55 219.5 186 64.5
Actinidia03015 Actinidia chinensis HOM05D004659 ORTHO05D005547 4.3e-55 218.8 165 66.1
AUR62027894 Chenopodium quinoa HOM05D004659 ORTHO05D005547 1.6e-54 216.9 179 58.7
AUR62036014 Chenopodium quinoa HOM05D004659 ORTHO05D005547 4.7e-54 215.3 179 58.1
SMO001G0016 Selaginella moellendorffii HOM05D004659 ORTHO05D005547 1.3e-48 197.2 138 71.0
Lalb_Chr13g0301081 Lupinus albus HOM05D004659 ORTHO05D005547 1.9e-47 193.4 178 62.4
CBR_g32465 Chara braunii HOM05D004659 ORTHO05D005547 6.8e-45 184.9 183 57.9
Dinv31375 Davidia involucrata HOM05D004659 ORTHO05D005547 8.3e-43 177.9 121 69.4
TPR.G37110 Trifolium pratense HOM05D004659 ORTHO05D005547 6.6e-40 168.3 131 59.5
Zm00001eb355270 Zea mays HOM05D004659 ORTHO05D005547 1.9e-39 166.8 141 56.0
SMO306G0014 Selaginella moellendorffii HOM05D004659 ORTHO05D005547 6.2e-38 161.8 101 76.2
Os05g0121500 Oryza sativa ssp. japonica HOM05D004659 ORTHO05D005547 1.8e-37 160.2 141 54.6
AT3G12370 Arabidopsis thaliana HOM05D004659 ORTHO05D005547 3.7e-35 152.5 140 52.9
AL3G24020 Arabidopsis lyrata HOM05D004659 ORTHO05D005547 8.3e-35 151.4 140 52.1
Aa31sc153G80 Aethionema arabicum HOM05D004659 ORTHO05D005547 1.4e-34 150.6 140 51.4
CARHR086910 Cardamine hirsuta HOM05D004659 ORTHO05D005547 2.4e-34 149.8 140 52.1
Thhalv10022434m.g Eutrema salsugineum HOM05D004659 ORTHO05D005547 2.4e-34 149.8 140 51.4
Sp3g10560 Schrenkiella parvula HOM05D004659 ORTHO05D005547 2.4e-34 149.8 140 51.4
Carub.0003s1173 Capsella rubella HOM05D004659 ORTHO05D005547 5.4e-34 148.7 137 51.8
C01p52890 Brassica napus HOM05D004659 ORTHO05D005547 7.1e-34 148.3 140 51.4
BcaC05g29267 Brassica carinata HOM05D004659 ORTHO05D005547 9.2e-34 147.9 140 50.7
C05p55460 Brassica napus HOM05D004659 ORTHO05D005547 9.2e-34 147.9 140 50.7
BolC5t34212H Brassica oleracea HOM05D004659 ORTHO05D005547 9.2e-34 147.9 140 50.7
BolC1t05226H Brassica oleracea HOM05D004659 ORTHO05D005547 1.2e-33 147.5 140 51.4
A05p37030 Brassica napus HOM05D004659 ORTHO05D005547 1.6e-33 147.1 140 50.7
BraA05t22500Z Brassica rapa HOM05D004659 ORTHO05D005547 1.6e-33 147.1 140 50.7
BcaC09g48234 Brassica carinata HOM05D004659 ORTHO05D005547 2.7e-33 146.4 148 50.0
HPP92_012064 Vanilla planifolia HOM05D004659 ORTHO05D005547 7.8e-33 144.8 142 49.3
A02p02000 Brassica napus HOM05D004659 ORTHO05D005547 4.7e-30 135.6 104 72.1
Glyma.13G155300 Glycine max HOM05D004659 ORTHO05D005547 8.4e-27 124.8 103 70.9
Haze_16952 Corylus avellana HOM05D004659 ORTHO05D005547 1.9e-26 123.6 179 41.9
PRCOL_00005567 Prasinoderma coloniale HOM05D004659 ORTHO05D005547 1.9e-26 123.6 168 41.1
Pp3c11_2850 Physcomitrium patens HOM05D004659 ORTHO05D005547 6.0e-25 118.6 155 47.1
Hund23274 Selenicereus undatus HOM05D004659 ORTHO05D005547 3.1e-21 106.3 151 39.7
Sc01g0005590 Simmondsia chinensis HOM05D004659 ORTHO05D005547 4.0e-21 105.9 151 41.1
BcaB01g05353 Brassica carinata HOM05D004659 ORTHO05D005547 4.4e-20 102.4 130 53.8
Sc26g0002120 Simmondsia chinensis HOM05D004659 ORTHO05D005547 1.3e-19 100.9 151 38.4
Cre06.g272850 Chlamydomonas reinhardtii HOM05D004659 ORTHO05D005547 1.7e-19 100.5 169 36.7
Rhsim07G0202500 Rhododendron simsii HOM05D004659 ORTHO05D005547 2.1e-17 93.6 77 62.3
Cfa001576 Carpinus fangiana HOM05D004659 ORTHO05D005547 2.7e-17 93.2 179 41.9
Sc01g0009170 Simmondsia chinensis HOM05D004659 ORTHO05D005547 6.0e-17 92.0 126 42.9
Zm00001eb342870 Zea mays HOM05D004659 ORTHO05D005547 1.9e-15 87.0 71 54.9
MD17G1117700 Malus domestica HOM05D004659 ORTHO05D005547 1.3e-14 84.3 86 50.0
GSVIVG01032650001 Vitis vinifera HOM05D004659 ORTHO05D005547 3.1e-13 79.7 180 41.1
MBI05_g35481_MAGBIO Magnolia biondii HOM05D004659 ORTHO05D005547 1.5e-12 77.4 81 53.1
EL10Ac6g15306 Beta vulgaris HOM05D004659 ORTHO05D005547 5.8e-12 75.5 151 29.8
Ah.09g233850 Amaranthus hybridus HOM05D004659 ORTHO05D005547 9.9e-12 74.7 146 28.8
AUR62043493 Chenopodium quinoa HOM05D004659 ORTHO05D005547 2.1e-09 67.0 109 34.9
Actinidia38237 Actinidia chinensis HOM05D004659 ORTHO05D005547 3.5e-09 66.2 51 64.7
Medtr3g058560 Medicago truncatula HOM05D004659 ORTHO05D005547 2.1e-06 57.0 48 58.3


User provided reference genes

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