Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c1_12950 Physcomitrium patens HOM05D001148 ORTHO05D000960 5.8e-119 431.0 238 100.0
AagrBONN_evm.TU.Sc2ySwM_228.3335 Anthoceros agrestis HOM05D001148 ORTHO05D000960 1.1e-19 101.3 243 32.9
SEGI_04072 Sequoiadendron giganteum HOM05D001148 ORTHO05D000960 1.8e-19 100.5 158 39.9
SEGI_22010 Sequoiadendron giganteum HOM05D001148 ORTHO05D000960 6.9e-19 98.6 227 31.3
SEGI_27990 Sequoiadendron giganteum HOM05D001148 ORTHO05D000960 6.0e-15 85.5 225 30.7
Gorai.011G013000 Gossypium raimondii HOM05D001148 ORTHO05D000960 1.3e-14 84.3 235 31.9
Gohir.D10G011700 Gossypium hirsutum HOM05D001148 ORTHO05D000960 1.8e-14 84.0 235 31.9
PGR042G0008 Punica granatum HOM05D001148 ORTHO05D000960 3.9e-14 82.8 241 34.0
ClCG01G021810 Citrullus lanatus HOM05D001148 ORTHO05D000960 1.1e-13 81.3 235 31.5
Duzib235G1022 Durio zibethinus HOM05D001148 ORTHO05D000960 1.5e-13 80.9 235 31.5
GSVIVG01012687001 Vitis vinifera HOM05D001148 ORTHO05D000960 2.5e-13 80.1 239 31.8
Thecc.06G224300 Theobroma cacao HOM05D001148 ORTHO05D000960 3.3e-13 79.7 239 31.8
Gohir.A10G012300 Gossypium hirsutum HOM05D001148 ORTHO05D000960 4.3e-13 79.3 235 30.6
CANSAT56G2857 Cannabis sativa HOM05D001148 ORTHO05D000960 5.6e-13 79.0 235 30.6
CiPaw.02G022700 Carya illinoinensis HOM05D001148 ORTHO05D000960 5.6e-13 79.0 221 27.1
Glyma.15G110000 Glycine max HOM05D001148 ORTHO05D000960 5.6e-13 79.0 238 30.3
PGSC0003DMG400022061 Solanum tuberosum HOM05D001148 ORTHO05D000960 5.6e-13 79.0 217 30.4
HPP92_008834 Vanilla planifolia HOM05D001148 ORTHO05D000960 5.6e-13 79.0 237 29.5
Sed0027807 Sechium edule HOM05D001148 ORTHO05D000960 7.4e-13 78.6 239 31.0
Duzib160G0340 Durio zibethinus HOM05D001148 ORTHO05D000960 1.3e-12 77.8 239 31.8
DCAR_008165 Daucus carota HOM05D001148 ORTHO05D000960 1.6e-12 77.4 237 31.6
Lalb_Chr18g0056531 Lupinus albus HOM05D001148 ORTHO05D000960 4.8e-12 75.9 240 28.8
Solyc02g032930.3 Solanum lycopersicum HOM05D001148 ORTHO05D000960 4.8e-12 75.9 240 30.0
Sopen02g011300 Solanum pennellii HOM05D001148 ORTHO05D000960 4.8e-12 75.9 240 30.0
CsaV3_6G048860 Cucumis sativus L. HOM05D001148 ORTHO05D000960 6.2e-12 75.5 235 30.6
CAN.G123.9 Capsicum annuum HOM05D001148 ORTHO05D000960 8.1e-12 75.1 240 30.4
Psat1g179160 Pisum sativum HOM05D001148 ORTHO05D000960 1.1e-11 74.7 238 31.1
TAR624G0132 Trochodendron aralioides HOM05D001148 ORTHO05D000960 1.1e-11 74.7 239 32.2
Ca_00677_v3 Cicer arietinum L. HOM05D001148 ORTHO05D000960 1.8e-11 73.9 238 27.7
SalBow8G0947 Salvia bowleyana HOM05D001148 ORTHO05D000960 1.8e-11 73.9 239 31.8
Sed0004976 Sechium edule HOM05D001148 ORTHO05D000960 1.8e-11 73.9 239 28.9
VMungo0540G0149 Vigna mungo HOM05D001148 ORTHO05D000960 1.8e-11 73.9 238 29.0
ATR0589G123 Amborella trichopoda HOM05D001148 ORTHO05D000960 2.4e-11 73.6 238 30.3
Phvul.006G148100 Phaseolus vulgaris HOM05D001148 ORTHO05D000960 2.4e-11 73.6 238 28.2
DCAR_004228 Daucus carota HOM05D001148 ORTHO05D000960 3.1e-11 73.2 214 29.9
Ciclev10016599m.g Citrus clementina HOM05D001148 ORTHO05D000960 4.0e-11 72.8 241 31.5
CiPaw.09G095100 Carya illinoinensis HOM05D001148 ORTHO05D000960 5.3e-11 72.4 239 30.5
Dinv13922 Davidia involucrata HOM05D001148 ORTHO05D000960 5.3e-11 72.4 236 30.1
Aa31LG1G2820 Aethionema arabicum HOM05D001148 ORTHO05D000960 6.9e-11 72.0 239 28.9
Nn1g03465 Nelumbo nucifera HOM05D001148 ORTHO05D000960 6.9e-11 72.0 240 30.0
CiPaw.01G049300 Carya illinoinensis HOM05D001148 ORTHO05D000960 9.0e-11 71.6 225 26.7
Haze_06825 Corylus avellana HOM05D001148 ORTHO05D000960 9.0e-11 71.6 239 31.8
Dinv20070 Davidia involucrata HOM05D001148 ORTHO05D000960 9.0e-11 71.6 235 29.8
Atru.chr10.2258 Acer truncatum HOM05D001148 ORTHO05D000960 1.2e-10 71.2 239 30.1
Hma1.2p1_0298F.1_g117680 Hydrangea macrophylla HOM05D001148 ORTHO05D000960 1.2e-10 71.2 244 29.1
TWI38G0419 Tripterygium wilfordii HOM05D001148 ORTHO05D000960 1.2e-10 71.2 237 30.8
Sabra04G0004700 Salix brachista HOM05D001148 ORTHO05D000960 1.5e-10 70.9 240 31.7
TWI63G1587 Tripterygium wilfordii HOM05D001148 ORTHO05D000960 2.0e-10 70.5 237 29.5
Aa31LG7G3550 Aethionema arabicum HOM05D001148 ORTHO05D000960 2.6e-10 70.1 235 29.4
QL05p000374 Quercus lobata HOM05D001148 ORTHO05D000960 3.4e-10 69.7 238 31.9
Eucgr.E04024 Eucalyptus grandis HOM05D001148 ORTHO05D000960 4.5e-10 69.3 242 29.8
Gohir.A06G206500 Gossypium hirsutum HOM05D001148 ORTHO05D000960 4.5e-10 69.3 234 28.2
Potri.002G245300 Populus trichocarpa HOM05D001148 ORTHO05D000960 4.5e-10 69.3 221 28.5
QL05p072545 Quercus lobata HOM05D001148 ORTHO05D000960 4.5e-10 69.3 238 31.9
Oeu002745.1 Olea europaea HOM05D001148 ORTHO05D000960 5.8e-10 68.9 236 27.1
Potri.004G007900 Populus trichocarpa HOM05D001148 ORTHO05D000960 5.8e-10 68.9 240 31.2
Potri.011G007200 Populus trichocarpa HOM05D001148 ORTHO05D000960 5.8e-10 68.9 240 30.4
Zm00001eb237890 Zea mays HOM05D001148 ORTHO05D000960 5.8e-10 68.9 235 27.7
A09p64270 Brassica napus HOM05D001148 ORTHO05D000960 7.6e-10 68.6 239 30.1
Carub.0001s1157 Capsella rubella HOM05D001148 ORTHO05D000960 7.6e-10 68.6 239 30.5
Sabra11G0006300 Salix brachista HOM05D001148 ORTHO05D000960 7.6e-10 68.6 240 29.6
Sabra11G0009700 Salix brachista HOM05D001148 ORTHO05D000960 7.6e-10 68.6 240 29.6
CDE02G4758 Ceratophyllum demersum HOM05D001148 ORTHO05D000960 1.0e-09 68.2 236 28.4
CsaV3_2G034830 Cucumis sativus L. HOM05D001148 ORTHO05D000960 1.0e-09 68.2 232 27.2
Nn1g07207 Nelumbo nucifera HOM05D001148 ORTHO05D000960 1.0e-09 68.2 240 28.3
Sp2g06960 Schrenkiella parvula HOM05D001148 ORTHO05D000960 1.0e-09 68.2 236 31.4
SpUn0014_0110 Schrenkiella parvula HOM05D001148 ORTHO05D000960 1.0e-09 68.2 236 31.4
Actinidia11863 Actinidia chinensis HOM05D001148 ORTHO05D000960 1.3e-09 67.8 236 30.9
BcaC03g16531 Brassica carinata HOM05D001148 ORTHO05D000960 1.3e-09 67.8 236 30.1
C02p43450 Brassica napus HOM05D001148 ORTHO05D000960 1.3e-09 67.8 236 30.1
BolC2t10402H Brassica oleracea HOM05D001148 ORTHO05D000960 1.3e-09 67.8 236 30.1
BolC8t52325H Brassica oleracea HOM05D001148 ORTHO05D000960 1.3e-09 67.8 239 30.1
CSS0010760 Camellia sinensis var. sinensis HOM05D001148 ORTHO05D000960 1.3e-09 67.8 236 30.1
Gorai.010G251300 Gossypium raimondii HOM05D001148 ORTHO05D000960 1.3e-09 67.8 234 28.6
SGA_v2.0_scaffold18G08330 Striga asiatica HOM05D001148 ORTHO05D000960 1.3e-09 67.8 219 27.4
Manes.17G029048 Manihot esculenta HOM05D001148 ORTHO05D000960 1.7e-09 67.4 240 32.5
Oeu013834.1 Olea europaea HOM05D001148 ORTHO05D000960 1.7e-09 67.4 236 30.5
PSO063G6769 Papaver somniferum HOM05D001148 ORTHO05D000960 1.7e-09 67.4 222 27.5
Nn1g07937 Nelumbo nucifera HOM05D001148 ORTHO05D000960 2.2e-09 67.0 221 25.8
C08p47880 Brassica napus HOM05D001148 ORTHO05D000960 2.9e-09 66.6 239 29.7
CARHR012230 Cardamine hirsuta HOM05D001148 ORTHO05D000960 2.9e-09 66.6 239 29.7
Gohir.D06G215100 Gossypium hirsutum HOM05D001148 ORTHO05D000960 2.9e-09 66.6 234 28.6
Aqoxy1G03109 Aquilegia oxysepala HOM05D001148 ORTHO05D000960 3.8e-09 66.2 239 28.9
AL1G23080 Arabidopsis lyrata HOM05D001148 ORTHO05D000960 3.8e-09 66.2 240 30.8
Cpa.g.sc152.33 Carica papaya HOM05D001148 ORTHO05D000960 3.8e-09 66.2 239 29.7
CiPaw.04G114600 Carya illinoinensis HOM05D001148 ORTHO05D000960 3.8e-09 66.2 237 30.0
PSO017G6073 Papaver somniferum HOM05D001148 ORTHO05D000960 3.8e-09 66.2 222 27.5
TAR629G0998 Trochodendron aralioides HOM05D001148 ORTHO05D000960 3.8e-09 66.2 193 30.1
Carub.0008s0645 Capsella rubella HOM05D001148 ORTHO05D000960 4.9e-09 65.9 236 31.4
ClCG02G008900 Citrullus lanatus HOM05D001148 ORTHO05D000960 4.9e-09 65.9 226 26.5
Phvul.005G115800 Phaseolus vulgaris HOM05D001148 ORTHO05D000960 4.9e-09 65.9 239 29.7
CARHR181800 Cardamine hirsuta HOM05D001148 ORTHO05D000960 6.4e-09 65.5 236 30.5
Peaxi162Scf00307g01423 Petunia axillaris HOM05D001148 ORTHO05D000960 6.4e-09 65.5 240 27.9
BcaB07g30612 Brassica carinata HOM05D001148 ORTHO05D000960 8.4e-09 65.1 236 30.5
Cfa004374 Carpinus fangiana HOM05D001148 ORTHO05D000960 8.4e-09 65.1 225 26.7
Glyma.09G005400 Glycine max HOM05D001148 ORTHO05D000960 8.4e-09 65.1 238 27.7
MBI07_g25505_MAGBIO Magnolia biondii HOM05D001148 ORTHO05D000960 8.4e-09 65.1 195 29.2
MD05G1349500 Malus domestica HOM05D001148 ORTHO05D000960 8.4e-09 65.1 241 30.3
Sp1g10530 Schrenkiella parvula HOM05D001148 ORTHO05D000960 8.4e-09 65.1 239 29.7
Actinidia09722 Actinidia chinensis HOM05D001148 ORTHO05D000960 1.1e-08 64.7 238 28.6
Nitab4.5_0004712g0030 Nicotiana tabacum HOM05D001148 ORTHO05D000960 1.1e-08 64.7 237 27.8
PGSC0003DMG400017494 Solanum tuberosum HOM05D001148 ORTHO05D000960 1.1e-08 64.7 224 26.3
Thhalv10008726m.g Eutrema salsugineum HOM05D001148 ORTHO05D000960 1.4e-08 64.3 239 29.3
THA.LOC104809492 Tarenaya hassleriana HOM05D001148 ORTHO05D000960 1.9e-08 63.9 239 28.9
MELO3C007406.2 Cucumis melo HOM05D001148 ORTHO05D000960 2.5e-08 63.5 235 28.1
CsaV3_3G029990 Cucumis sativus L. HOM05D001148 ORTHO05D000960 2.5e-08 63.5 221 26.7
Hma1.2p1_0039F.1_g024500 Hydrangea macrophylla HOM05D001148 ORTHO05D000960 2.5e-08 63.5 221 27.6
Solyc09g059570.3 Solanum lycopersicum HOM05D001148 ORTHO05D000960 2.5e-08 63.5 224 26.3
Sopen09g022750 Solanum pennellii HOM05D001148 ORTHO05D000960 2.5e-08 63.5 224 26.3
Aqoxy2G03903 Aquilegia oxysepala HOM05D001148 ORTHO05D000960 4.2e-08 62.8 213 26.3
AL8G18690 Arabidopsis lyrata HOM05D001148 ORTHO05D000960 4.2e-08 62.8 236 30.1
AUR62012734 Chenopodium quinoa HOM05D001148 ORTHO05D000960 4.2e-08 62.8 243 29.2
Ca_19507_v3 Cicer arietinum L. HOM05D001148 ORTHO05D000960 4.2e-08 62.8 239 28.9
Glyma.12G192600 Glycine max HOM05D001148 ORTHO05D000960 4.2e-08 62.8 237 29.5
Nitab4.5_0000345g0020 Nicotiana tabacum HOM05D001148 ORTHO05D000960 4.2e-08 62.8 221 24.9
TAR365G1065 Trochodendron aralioides HOM05D001148 ORTHO05D000960 4.2e-08 62.8 221 25.8
CSS0006751 Camellia sinensis var. sinensis HOM05D001148 ORTHO05D000960 5.5e-08 62.4 221 25.3
AUR62021920 Chenopodium quinoa HOM05D001148 ORTHO05D000960 5.5e-08 62.4 243 28.8
Dinv19182 Davidia involucrata HOM05D001148 ORTHO05D000960 5.5e-08 62.4 221 25.3
vmacro12192 Vaccinium macrocarpon HOM05D001148 ORTHO05D000960 5.5e-08 62.4 239 28.0
MSTRG.7195 Avicennia marina HOM05D001148 ORTHO05D000960 7.1e-08 62.0 236 26.3
Cc01_g16800 Coffea canephora HOM05D001148 ORTHO05D000960 7.1e-08 62.0 220 26.4
ECA236G2251 Erigeron canadensis HOM05D001148 ORTHO05D000960 7.1e-08 62.0 204 26.5
Lj1A1233G61 Lonicera japonica HOM05D001148 ORTHO05D000960 7.1e-08 62.0 228 29.8
MD10G1324100 Malus domestica HOM05D001148 ORTHO05D000960 7.1e-08 62.0 241 29.0
Oeu051888.1 Olea europaea HOM05D001148 ORTHO05D000960 7.1e-08 62.0 227 26.9
QL09p052518 Quercus lobata HOM05D001148 ORTHO05D000960 7.1e-08 62.0 221 26.7
AT5G42570 Arabidopsis thaliana HOM05D001148 ORTHO05D000960 9.3e-08 61.6 236 30.1
EL10Ac8g20089 Beta vulgaris HOM05D001148 ORTHO05D000960 9.3e-08 61.6 243 29.2
ECA236G2164 Erigeron canadensis HOM05D001148 ORTHO05D000960 9.3e-08 61.6 216 29.6
Sed0022136 Sechium edule HOM05D001148 ORTHO05D000960 1.2e-07 61.2 232 26.7
Sc05g0009330 Simmondsia chinensis HOM05D001148 ORTHO05D000960 1.2e-07 61.2 239 29.7
FAN15G0721 Fragaria x ananassa HOM05D001148 ORTHO05D000960 1.6e-07 60.8 223 26.5
MSTRG.17998 Avicennia marina HOM05D001148 ORTHO05D000960 2.1e-07 60.5 239 28.0
Lalb_Chr20g0118791 Lupinus albus HOM05D001148 ORTHO05D000960 2.1e-07 60.5 238 27.7
MBI07_g25512_MAGBIO Magnolia biondii HOM05D001148 ORTHO05D000960 2.1e-07 60.5 82 42.7
Os02g0321800 Oryza sativa ssp. japonica HOM05D001148 ORTHO05D000960 2.1e-07 60.5 241 27.8
Peaxi162Scf00238g00026 Petunia axillaris HOM05D001148 ORTHO05D000960 2.1e-07 60.5 224 25.9
Sc12g0002260 Simmondsia chinensis HOM05D001148 ORTHO05D000960 2.1e-07 60.5 236 27.5
THA.LOC104820464 Tarenaya hassleriana HOM05D001148 ORTHO05D000960 2.1e-07 60.5 236 29.7
Thecc.01G221800 Theobroma cacao HOM05D001148 ORTHO05D000960 2.1e-07 60.5 222 25.2
A02p27230 Brassica napus HOM05D001148 ORTHO05D000960 2.7e-07 60.1 236 28.8
BraA02t07739Z Brassica rapa HOM05D001148 ORTHO05D000960 2.7e-07 60.1 236 28.8
BraA09t41771Z Brassica rapa HOM05D002326 ORTHO05D003994 2.7e-07 60.1 242 30.2
Gorai.001G232500 Gossypium raimondii HOM05D001148 ORTHO05D000960 2.7e-07 60.1 221 26.2
SalBow6G1794 Salvia bowleyana HOM05D001148 ORTHO05D000960 2.7e-07 60.1 221 26.7
SalBow6G4344 Salvia bowleyana HOM05D001148 ORTHO05D000960 2.7e-07 60.1 221 26.7
Hund23449 Selenicereus undatus HOM05D001148 ORTHO05D000960 2.7e-07 60.1 239 26.4
TWI75G1294 Tripterygium wilfordii HOM05D001148 ORTHO05D000960 2.7e-07 60.1 221 23.1
TAR362G1309 Trochodendron aralioides HOM05D001148 ORTHO05D000960 2.7e-07 60.1 221 26.2
CDE05G1151 Ceratophyllum demersum HOM05D001148 ORTHO05D000960 3.5e-07 59.7 219 26.9
DCAR_021166 Daucus carota HOM05D001148 ORTHO05D000960 3.5e-07 59.7 233 27.0
Prupe.4G018100 Prunus persica HOM05D001148 ORTHO05D000960 3.5e-07 59.7 239 26.8
SalBow3G2166 Salvia bowleyana HOM05D001148 ORTHO05D000960 3.5e-07 59.7 221 27.6
unitig_746.g26590 Utricularia gibba HOM05D001148 ORTHO05D000960 3.5e-07 59.7 225 24.9
Lj6g0023794 Lotus japonicus HOM05D001148 ORTHO05D000960 4.6e-07 59.3 238 27.7
Peaxi162Scf00394g00021 Petunia axillaris HOM05D001148 ORTHO05D000960 4.6e-07 59.3 238 26.5
TWI38G1396 Tripterygium wilfordii HOM05D001148 ORTHO05D000960 4.6e-07 59.3 228 28.1
Gohir.D07G206200 Gossypium hirsutum HOM05D001148 ORTHO05D000960 6.0e-07 58.9 221 25.8
COL.COLO4_31803 Corchorus olitorius HOM05D001148 ORTHO05D000960 7.9e-07 58.5 79 41.8
Phvul.010G021100 Phaseolus vulgaris HOM05D001148 ORTHO05D000960 7.9e-07 58.5 228 24.1
Os06g0367500 Oryza sativa ssp. japonica HOM05D001148 ORTHO05D000960 1.0e-06 58.2 235 30.6
QL08p032616 Quercus lobata HOM05D001148 ORTHO05D000960 1.0e-06 58.2 237 26.2
arahy.Tifrunner.gnm1.ann1.4BNM0X Arachis hypogaea HOM05D001148 ORTHO05D000960 1.3e-06 57.8 225 27.6
Lj2A266T58 Lonicera japonica HOM05D001148 ORTHO05D000960 1.3e-06 57.8 236 29.7
RcHm_v2.0_Chr6g0284221 Rosa chinensis HOM05D001148 ORTHO05D000960 1.3e-06 57.8 223 26.0
arahy.Tifrunner.gnm1.ann1.IAB8I8 Arachis hypogaea HOM05D001148 ORTHO05D000960 1.8e-06 57.4 225 27.6
ClCG07G002030 Citrullus lanatus HOM05D001148 ORTHO05D000960 1.8e-06 57.4 221 25.8
Cc09_g01450 Coffea canephora HOM05D001148 ORTHO05D000960 1.8e-06 57.4 236 29.7
Os05g0272900 Oryza sativa ssp. japonica HOM05D001148 ORTHO05D000960 1.8e-06 57.4 239 25.5
Lsat_1_v5_gn_7_98541 Lactuca sativa HOM05D001148 ORTHO05D000960 2.3e-06 57.0 239 27.6
Medtr4g049540 Medicago truncatula HOM05D001148 ORTHO05D000960 2.3e-06 57.0 239 28.5
Migut.D02498 Erythranthe guttata HOM05D001148 ORTHO05D000960 3.0e-06 56.6 218 27.5
PGSC0003DMG400016468 Solanum tuberosum HOM05D001148 ORTHO05D000960 3.0e-06 56.6 240 25.4
arahy.Tifrunner.gnm1.ann1.8KT0CJ Arachis hypogaea HOM05D001148 ORTHO05D000960 3.9e-06 56.2 240 28.3
Duzib211G0673 Durio zibethinus HOM05D001148 ORTHO05D000960 3.9e-06 56.2 221 24.9
Nitab4.5_0000045g0410 Nicotiana tabacum HOM05D001148 ORTHO05D000960 3.9e-06 56.2 221 25.8
TWI75G1046 Tripterygium wilfordii HOM05D001148 ORTHO05D000960 3.9e-06 56.2 235 25.5
arahy.Tifrunner.gnm1.ann1.M2LW4E Arachis hypogaea HOM05D001148 ORTHO05D000960 5.1e-06 55.8 239 28.9
TPR.G4616 Trifolium pratense HOM05D001148 ORTHO05D000960 5.1e-06 55.8 227 28.2
CSS0035765 Camellia sinensis var. sinensis HOM05D001148 ORTHO05D000960 6.7e-06 55.5 236 29.2
FAN05G4903 Fragaria x ananassa HOM05D001148 ORTHO05D000960 6.7e-06 55.5 239 28.9
Phvul.011G102200 Phaseolus vulgaris HOM05D001148 ORTHO05D000960 6.7e-06 55.5 227 27.3


User provided reference genes

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