Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c1_12270 Physcomitrium patens HOM05D001145 ORTHO05D050315 5.1e-30 133.7 63 100.0
Pp3c1_12190 Physcomitrium patens HOM05D001145 ORTHO05D050315 2.1e-20 101.7 49 98.0
Pp3c11_12710 Physcomitrium patens HOM05D001145 ORTHO05D008176 4.2e-16 87.4 73 61.6
Pp3c7_15550 Physcomitrium patens HOM05D001145 ORTHO05D008176 7.4e-13 76.6 73 53.4
AagrBONN_evm.TU.Sc2ySwM_344.3366 Anthoceros agrestis HOM05D001145 ORTHO05D008176 1.2e-10 69.3 73 47.9
CDE04G1965 Ceratophyllum demersum HOM05D001145 ORTHO05D008176 1.3e-09 65.9 73 47.9
MD08G1051400 Malus domestica HOM05D001145 ORTHO05D008176 1.3e-09 65.9 73 46.6
Aqoxy7G03277 Aquilegia oxysepala HOM05D001145 ORTHO05D008176 5.0e-09 63.9 73 45.2
MBI15_g07484_MAGBIO Magnolia biondii HOM05D001145 ORTHO05D008176 5.0e-09 63.9 73 42.5
unitig_0.g2818 Utricularia gibba HOM05D002170 ORTHO05D005003 5.0e-09 63.9 73 47.9
Aa31LG7G11580 Aethionema arabicum HOM05D001145 ORTHO05D008176 8.5e-09 63.2 73 43.8
CDE07G1427 Ceratophyllum demersum HOM05D000821 ORTHO05D008176 1.1e-08 62.8 73 45.2
A03p26990 Brassica napus HOM05D001145 ORTHO05D008176 2.5e-08 61.6 73 41.1
C03p32390 Brassica napus HOM05D001145 ORTHO05D008176 2.5e-08 61.6 73 41.1
BolC3t15580H Brassica oleracea HOM05D001145 ORTHO05D008176 2.5e-08 61.6 73 41.1
BraA03t11910Z Brassica rapa HOM05D001145 ORTHO05D008176 2.5e-08 61.6 73 41.1
ATR0580G386 Amborella trichopoda HOM05D001145 ORTHO05D008176 3.2e-08 61.2 73 42.5
CANSAT25G1628 Cannabis sativa HOM05D001145 ORTHO05D008176 3.2e-08 61.2 73 43.8
Potri.006G267300 Populus trichocarpa HOM05D001145 ORTHO05D008176 3.2e-08 61.2 73 41.1
Prupe.1G397200 Prunus persica HOM05D001145 ORTHO05D008176 3.2e-08 61.2 73 43.8
Sabra06G0209600 Salix brachista HOM05D001145 ORTHO05D008176 3.2e-08 61.2 73 41.1
Sabra18G0019000 Salix brachista HOM05D001145 ORTHO05D008176 3.2e-08 61.2 73 45.2
Sc06g0000320 Simmondsia chinensis HOM05D001145 ORTHO05D008176 3.2e-08 61.2 73 43.8
TWI34G0371 Tripterygium wilfordii HOM05D001145 ORTHO05D008176 3.2e-08 61.2 73 45.2
TAR626G1257 Trochodendron aralioides HOM05D001145 ORTHO05D008176 4.2e-08 60.8 73 43.8
Ah.12g060390 Amaranthus hybridus HOM05D001145 ORTHO05D008176 5.5e-08 60.5 73 42.5
AUR62024771 Chenopodium quinoa HOM05D001145 ORTHO05D008176 5.5e-08 60.5 73 43.8
AUR62032447 Chenopodium quinoa HOM05D001145 ORTHO05D008176 5.5e-08 60.5 73 43.8
Migut.A00391 Erythranthe guttata HOM05D001145 ORTHO05D008176 5.5e-08 60.5 73 41.1
Sed0027737 Sechium edule HOM05D001145 ORTHO05D008176 5.5e-08 60.5 73 43.8
Sopen12g032380 Solanum pennellii HOM05D001145 ORTHO05D008176 5.5e-08 60.5 73 42.5
Peaxi162Scf00459g00119 Petunia axillaris HOM05D001145 ORTHO05D008176 7.2e-08 60.1 73 41.1
Potri.018G015700 Populus trichocarpa HOM05D001145 ORTHO05D008176 7.2e-08 60.1 73 43.8
Zm00001eb257630 Zea mays HOM05D001145 ORTHO05D008176 7.2e-08 60.1 73 42.5
arahy.Tifrunner.gnm1.ann1.VKSA8D Arachis hypogaea HOM05D001145 ORTHO05D008176 9.4e-08 59.7 73 42.5
arahy.Tifrunner.gnm1.ann1.ZP8Y56 Arachis hypogaea HOM05D001145 ORTHO05D008176 9.4e-08 59.7 73 42.5
Cfa013013 Carpinus fangiana HOM05D001145 ORTHO05D008176 9.4e-08 59.7 73 42.5
PSO063G6900 Papaver somniferum HOM05D001145 ORTHO05D008176 9.4e-08 59.7 73 42.5
PSO782G5236 Papaver somniferum HOM05D001145 ORTHO05D008176 9.4e-08 59.7 73 42.5
QL02p018077 Quercus lobata HOM05D001145 ORTHO05D008176 9.4e-08 59.7 73 43.8
Sp4g03840 Schrenkiella parvula HOM05D001145 ORTHO05D008176 9.4e-08 59.7 73 39.7
PGSC0003DMG401029274 Solanum tuberosum HOM05D001145 ORTHO05D008176 9.4e-08 59.7 73 41.1
Atru.BG.19.p Acer truncatum HOM05D001145 ORTHO05D008176 1.2e-07 59.3 73 42.5
AL4G15860 Arabidopsis lyrata HOM05D001145 ORTHO05D008176 1.2e-07 59.3 73 39.7
AT2G24820 Arabidopsis thaliana HOM05D001145 ORTHO05D008176 1.2e-07 59.3 73 39.7
Carub.0004s0444 Capsella rubella HOM05D001145 ORTHO05D008176 1.2e-07 59.3 73 39.7
Ciclev10007702m.g Citrus clementina HOM05D001145 ORTHO05D008176 1.2e-07 59.3 73 42.5
Manes.16G132300 Manihot esculenta HOM05D001145 ORTHO05D008176 1.2e-07 59.3 73 42.5
Psat5g033120 Pisum sativum HOM05D001145 ORTHO05D008176 1.2e-07 59.3 73 41.1
Actinidia22279 Actinidia chinensis HOM05D001145 ORTHO05D008176 1.6e-07 58.9 73 41.1
CiPaw.07G232800 Carya illinoinensis HOM05D001145 ORTHO05D008176 1.6e-07 58.9 73 42.5
ClCG05G016090 Citrullus lanatus HOM05D001145 ORTHO05D008176 1.6e-07 58.9 73 42.5
Glyma.04G059800 Glycine max HOM05D001145 ORTHO05D008176 1.6e-07 58.9 73 43.8
Gohir.A05G060800 Gossypium hirsutum HOM05D001145 ORTHO05D008176 1.6e-07 58.9 73 43.8
Gohir.D05G063000 Gossypium hirsutum HOM05D001145 ORTHO05D008176 1.6e-07 58.9 73 43.8
Gorai.009G064000 Gossypium raimondii HOM05D001145 ORTHO05D008176 1.6e-07 58.9 73 43.8
Nn2g12480 Nelumbo nucifera HOM05D001145 ORTHO05D008176 1.6e-07 58.9 73 43.8
Oeu048541.1 Olea europaea HOM05D001145 ORTHO05D008176 1.6e-07 58.9 73 41.1
CARHR294570 Cardamine hirsuta HOM05D001145 ORTHO05D008176 2.1e-07 58.5 73 39.7
EL10Ac2g02451 Beta vulgaris HOM05D001145 ORTHO05D008176 2.7e-07 58.2 73 41.1
Cpa.g.sc148.47 Carica papaya HOM05D001145 ORTHO05D008176 2.7e-07 58.2 73 41.1
Ca_15787_v3 Cicer arietinum L. HOM05D001145 ORTHO05D008176 2.7e-07 58.2 73 42.5
Ciclev10007965m.g Citrus clementina HOM05D001145 ORTHO05D008176 2.7e-07 58.2 73 42.5
COL.COLO4_18970 Corchorus olitorius HOM05D001145 ORTHO05D008176 2.7e-07 58.2 73 42.5
HanXRQChr17g0536341 Helianthus annuus HOM05D001145 ORTHO05D008176 2.7e-07 58.2 73 41.1
Lj7A738T100 Lonicera japonica HOM05D001145 ORTHO05D008176 2.7e-07 58.2 73 41.1
Medtr3g105820 Medicago truncatula HOM05D001145 ORTHO05D008176 2.7e-07 58.2 73 42.5
Os02g0792800 Oryza sativa ssp. japonica HOM05D001145 ORTHO05D008176 2.7e-07 58.2 73 42.5
HPP92_017165 Vanilla planifolia HOM05D001145 ORTHO05D008176 2.7e-07 58.2 72 41.7
Nitab4.5_0000668g0080 Nicotiana tabacum HOM05D001145 ORTHO05D008176 3.6e-07 57.8 73 39.7
Nitab4.5_0001110g0090 Nicotiana tabacum HOM05D001145 ORTHO05D008176 3.6e-07 57.8 73 39.7
Hund02973 Selenicereus undatus HOM05D001145 ORTHO05D008176 3.6e-07 57.8 73 42.5
GSVIVG01036007001 Vitis vinifera HOM05D001145 ORTHO05D008176 3.6e-07 57.8 73 42.5
Actinidia06455 Actinidia chinensis HOM05D001145 ORTHO05D008176 4.6e-07 57.4 73 39.7
CiPaw.08G004400 Carya illinoinensis HOM05D001145 ORTHO05D008176 4.6e-07 57.4 73 41.1
Duzib187G1480 Durio zibethinus HOM05D001145 ORTHO05D008176 4.6e-07 57.4 73 41.1
Thhalv10000113m.g Eutrema salsugineum HOM05D001145 ORTHO05D008176 4.6e-07 57.4 73 39.7
PGR044G1085 Punica granatum HOM05D001145 ORTHO05D008176 4.6e-07 57.4 73 42.5
SalBow4G1746 Salvia bowleyana HOM05D001145 ORTHO05D008176 4.6e-07 57.4 73 42.5
Solyc12g096550.2 Solanum lycopersicum HOM05D001145 ORTHO05D008176 4.6e-07 57.4 73 39.7
Cc08_g06700 Coffea canephora HOM05D001145 ORTHO05D008176 6.1e-07 57.0 73 41.1
Eucgr.C04031 Eucalyptus grandis HOM05D001145 ORTHO05D008176 6.1e-07 57.0 73 41.1
Hma1.2p1_0392F.1_g142980 Hydrangea macrophylla HOM05D001145 ORTHO05D008176 6.1e-07 57.0 73 41.1
Lalb_Chr08g0244481 Lupinus albus HOM05D001145 ORTHO05D008176 6.1e-07 57.0 73 41.1
Thecc.09G013700 Theobroma cacao HOM05D001145 ORTHO05D008176 6.1e-07 57.0 73 42.5
Lj1g0021239 Lotus japonicus HOM05D001145 ORTHO05D008176 7.9e-07 56.6 73 41.1
TPR.G1896 Trifolium pratense HOM05D001145 ORTHO05D008176 7.9e-07 56.6 73 41.1
DCAR_004584 Daucus carota HOM05D001145 ORTHO05D008176 1.0e-06 56.2 73 41.1
Glyma.06G060200 Glycine max HOM05D001145 ORTHO05D008176 1.0e-06 56.2 73 42.5
Phvul.009G086000 Phaseolus vulgaris HOM05D001145 ORTHO05D008176 1.0e-06 56.2 73 42.5
THA.LOC104803608 Tarenaya hassleriana HOM05D001145 ORTHO05D008176 1.0e-06 56.2 73 39.7
MELO3C016944.2 Cucumis melo HOM05D001145 ORTHO05D008176 1.4e-06 55.8 73 42.5
CsaV3_4G036370 Cucumis sativus L. HOM05D001145 ORTHO05D008176 1.4e-06 55.8 73 42.5
CSS0018677 Camellia sinensis var. sinensis HOM05D001145 ORTHO05D008176 1.8e-06 55.5 73 41.1
CSS0043219 Camellia sinensis var. sinensis HOM05D001145 ORTHO05D008176 1.8e-06 55.5 73 41.1
Dinv16415 Davidia involucrata HOM05D001145 ORTHO05D008176 1.8e-06 55.5 73 39.7
ECA246G4066 Erigeron canadensis HOM05D001145 ORTHO05D008176 1.8e-06 55.5 73 39.7
FvH4_2g41330 Fragaria vesca HOM05D001145 ORTHO05D008176 2.3e-06 55.1 73 39.7
FAN15G1263 Fragaria x ananassa HOM05D001145 ORTHO05D008176 2.3e-06 55.1 73 39.7
FAN27G3317 Fragaria x ananassa HOM05D001145 ORTHO05D008176 2.3e-06 55.1 73 39.7
Prupe.1G397100 Prunus persica HOM05D001145 ORTHO05D008176 2.3e-06 55.1 73 39.7
RcHm_v2.0_Chr6g0299151 Rosa chinensis HOM05D001145 ORTHO05D008176 2.3e-06 55.1 73 39.7
VMungo1309G0760 Vigna mungo HOM05D001145 ORTHO05D008176 3.0e-06 54.7 73 39.7
vmacro11276 Vaccinium macrocarpon HOM05D001145 ORTHO05D008176 3.9e-06 54.3 73 41.1
CSS0007167 Camellia sinensis var. sinensis HOM05D001145 ORTHO05D008176 5.1e-06 53.9 73 39.7
CSS0034347 Camellia sinensis var. sinensis HOM05D001145 ORTHO05D008176 5.1e-06 53.9 73 39.7
CAN.G566.49 Capsicum annuum HOM05D001145 ORTHO05D008176 6.7e-06 53.5 73 38.4
AUR62025751 Chenopodium quinoa HOM05D001145 ORTHO05D008176 8.8e-06 53.1 49 53.1
Lsat_1_v5_gn_3_22540 Lactuca sativa HOM05D001145 ORTHO05D008176 8.8e-06 53.1 73 38.4
SGA_v2.0_scaffold27G11633 Striga asiatica HOM05D001145 ORTHO05D008176 8.8e-06 53.1 73 39.7


User provided reference genes

Program Settings