Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c1_10100 Physcomitrium patens HOM05D003693 ORTHO05D004698 0.0e+00 1096.6 561 100.0
Pp3c2_32740 Physcomitrium patens HOM05D003693 ORTHO05D004698 1.1e-296 1022.7 561 92.7
Mapoly0131s0027 Marchantia polymorpha HOM05D003693 ORTHO05D004698 1.8e-251 872.5 563 79.9
ATR1096G033 Amborella trichopoda HOM05D003693 ORTHO05D004698 3.9e-246 854.7 560 77.1
SEGI_39911 Sequoiadendron giganteum HOM05D003693 ORTHO05D004698 1.8e-243 845.9 561 76.8
SMO301G0028 Selaginella moellendorffii HOM05D003693 ORTHO05D004698 2.3e-243 845.5 583 75.5
MBI19_g25011_MAGBIO Magnolia biondii HOM05D003693 ORTHO05D004698 1.2e-236 823.2 561 74.9
CDE04G2718 Ceratophyllum demersum HOM05D003693 ORTHO05D004698 2.1e-236 822.4 560 75.4
TAR563G0002 Trochodendron aralioides HOM05D003693 ORTHO05D004698 3.6e-236 821.6 560 74.8
CANSAT21G0769 Cannabis sativa HOM05D003693 ORTHO05D004698 1.1e-235 820.1 560 75.5
Duzib268G0828 Durio zibethinus HOM05D003693 ORTHO05D004698 6.8e-235 817.4 560 74.1
Dinv43405 Davidia involucrata HOM05D003693 ORTHO05D004698 8.9e-235 817.0 560 75.7
Hma1.2p1_0685F.1_g203180 Hydrangea macrophylla HOM05D003693 ORTHO05D004698 8.9e-235 817.0 560 75.4
CiPaw.16G119500 Carya illinoinensis HOM05D003693 ORTHO05D004698 1.2e-234 816.6 560 74.6
Migut.B01266 Erythranthe guttata HOM05D003693 ORTHO05D004698 1.2e-234 816.6 560 74.1
SGA_v2.0_scaffold119G32763 Striga asiatica HOM05D003693 ORTHO05D004698 1.2e-234 816.6 560 74.5
Phvul.008G053200 Phaseolus vulgaris HOM05D003693 ORTHO05D004698 3.4e-234 815.1 560 75.2
PSO384G0563 Papaver somniferum HOM05D003693 ORTHO05D004698 4.4e-234 814.7 560 73.9
Gorai.012G026300 Gossypium raimondii HOM05D003693 ORTHO05D004698 5.8e-234 814.3 560 74.3
Sc10g0000370 Simmondsia chinensis HOM05D003693 ORTHO05D004698 7.6e-234 813.9 560 75.0
Thecc.01G406700 Theobroma cacao HOM05D003693 ORTHO05D004698 7.6e-234 813.9 560 74.3
Glyma.18G243300 Glycine max HOM05D003693 ORTHO05D004698 1.3e-233 813.1 560 74.8
Rhsim07G0058800 Rhododendron simsii HOM05D003693 ORTHO05D004698 1.3e-233 813.1 565 75.2
Ciclev10011203m.g Citrus clementina HOM05D003693 ORTHO05D004698 2.2e-233 812.4 560 75.0
PSO339G5758 Papaver somniferum HOM05D003693 ORTHO05D004698 2.2e-233 812.4 560 73.6
Cfa020929 Carpinus fangiana HOM05D003693 ORTHO05D004698 3.7e-233 811.6 560 74.5
COL.COLO4_12338 Corchorus olitorius HOM05D003693 ORTHO05D004698 3.7e-233 811.6 561 74.0
Aqoxy5G04181 Aquilegia oxysepala HOM05D003693 ORTHO05D004698 4.9e-233 811.2 561 75.0
MD12G1263800 Malus domestica HOM05D003693 ORTHO05D004698 6.4e-233 810.8 559 75.3
CSS0039233 Camellia sinensis var. sinensis HOM05D003693 ORTHO05D004698 8.4e-233 810.4 560 75.0
Prupe.6G362600 Prunus persica HOM05D003693 ORTHO05D004698 1.1e-232 810.1 559 75.1
TWI36G1545 Tripterygium wilfordii HOM05D003693 ORTHO05D004698 1.1e-232 810.1 561 74.3
ClCG11G009710 Citrullus lanatus HOM05D003693 ORTHO05D004698 1.4e-232 809.7 560 74.1
Atru.chr12.1748 Acer truncatum HOM05D003693 ORTHO05D004698 1.9e-232 809.3 560 74.1
MD04G1246300 Malus domestica HOM05D003693 ORTHO05D004698 1.9e-232 809.3 559 75.1
Ca_07998_v3 Cicer arietinum L. HOM05D003693 ORTHO05D004698 4.1e-232 808.1 560 74.5
Gohir.A05G393100 Gossypium hirsutum HOM05D003693 ORTHO05D004698 4.1e-232 808.1 560 73.9
Manes.12G004200 Manihot esculenta HOM05D003693 ORTHO05D004698 4.1e-232 808.1 561 74.2
Nitab4.5_0005367g0010 Nicotiana tabacum HOM05D003693 ORTHO05D004698 9.2e-232 807.0 561 74.7
Glyma.09G249100 Glycine max HOM05D003693 ORTHO05D004698 1.2e-231 806.6 560 74.5
MSTRG.17008 Avicennia marina HOM05D003693 ORTHO05D004698 1.6e-231 806.2 560 73.6
MSTRG.20559 Avicennia marina HOM05D003693 ORTHO05D004698 1.6e-231 806.2 560 73.9
Thecc.05G189800 Theobroma cacao HOM05D003693 ORTHO05D004698 1.6e-231 806.2 561 74.3
Lalb_Chr01g0020541 Lupinus albus HOM05D003693 ORTHO05D004698 2.1e-231 805.8 560 74.8
Lj1g0027377 Lotus japonicus HOM05D003693 ORTHO05D004698 6.0e-231 804.3 562 74.2
Nitab4.5_0001244g0140 Nicotiana tabacum HOM05D003693 ORTHO05D004698 7.8e-231 803.9 560 74.3
AT3G24090 Arabidopsis thaliana HOM05D003693 ORTHO05D004698 1.0e-230 803.5 560 74.6
CsaV3_2G010560 Cucumis sativus L. HOM05D003693 ORTHO05D004698 1.0e-230 803.5 560 73.2
CARHR100130 Cardamine hirsuta HOM05D003693 ORTHO05D004698 1.3e-230 803.1 560 74.1
Duzib133G0510 Durio zibethinus HOM05D003693 ORTHO05D004698 1.3e-230 803.1 560 73.2
Thhalv10002424m.g Eutrema salsugineum HOM05D003693 ORTHO05D004698 1.3e-230 803.1 560 74.1
Lalb_Chr03g0038731 Lupinus albus HOM05D003693 ORTHO05D004698 1.3e-230 803.1 560 74.6
SHI13710 Sapria himalayana HOM05D003693 ORTHO05D004698 1.3e-230 803.1 559 75.0
Peaxi162Scf00694g00440 Petunia axillaris HOM05D003693 ORTHO05D004698 1.7e-230 802.7 559 74.2
Sp3g21850 Schrenkiella parvula HOM05D003693 ORTHO05D004698 1.7e-230 802.7 560 73.9
Aa31LG8G10790 Aethionema arabicum HOM05D003693 ORTHO05D004698 3.0e-230 802.0 560 73.9
QL10p037598 Quercus lobata HOM05D003693 ORTHO05D004698 3.0e-230 802.0 558 73.7
AUR62023098 Chenopodium quinoa HOM05D003693 ORTHO05D004698 3.9e-230 801.6 560 74.3
Oeu014595.1 Olea europaea HOM05D003693 ORTHO05D004698 6.6e-230 800.8 560 74.8
Sed0016989 Sechium edule HOM05D003693 ORTHO05D004698 6.6e-230 800.8 560 73.6
Potri.019G054500 Populus trichocarpa HOM05D003693 ORTHO05D004698 8.6e-230 800.4 560 74.5
Eucgr.H01402 Eucalyptus grandis HOM05D003693 ORTHO05D004698 1.1e-229 800.0 560 73.0
Medtr7g080270 Medicago truncatula HOM05D003693 ORTHO05D004698 1.1e-229 800.0 560 73.8
EL10Ac2g04376 Beta vulgaris HOM05D003693 ORTHO05D004698 1.9e-229 799.3 561 74.0
SalBow6G5509 Salvia bowleyana HOM05D003693 ORTHO05D004698 1.9e-229 799.3 561 73.6
unitig_0.g1393 Utricularia gibba HOM05D003693 ORTHO05D004698 1.9e-229 799.3 558 72.9
FvH4_6g00360 Fragaria vesca HOM05D003693 ORTHO05D004698 2.5e-229 798.9 561 74.2
FAN09G1864 Fragaria x ananassa HOM05D003693 ORTHO05D004698 2.5e-229 798.9 561 74.2
SalBow6G6742 Salvia bowleyana HOM05D003693 ORTHO05D004698 2.5e-229 798.9 561 73.4
THA.LOC104808730 Tarenaya hassleriana HOM05D003693 ORTHO05D004698 2.5e-229 798.9 560 73.2
Carub.0003s2444 Capsella rubella HOM05D003693 ORTHO05D004698 3.3e-229 798.5 560 73.8
Gohir.D12G103600 Gossypium hirsutum HOM05D003693 ORTHO05D004698 4.3e-229 798.1 562 73.0
FAN14G5956 Fragaria x ananassa HOM05D003693 ORTHO05D004698 5.6e-229 797.7 561 74.2
Psat3g102600 Pisum sativum HOM05D003693 ORTHO05D004698 5.6e-229 797.7 560 73.2
PGR119G0062 Punica granatum HOM05D003693 ORTHO05D004698 5.6e-229 797.7 560 73.8
Gohir.A12G100800 Gossypium hirsutum HOM05D003693 ORTHO05D004698 7.3e-229 797.3 562 73.0
AL3G39260 Arabidopsis lyrata HOM05D003693 ORTHO05D004698 1.6e-228 796.2 560 73.8
VMungo1383G0289 Vigna mungo HOM05D003693 ORTHO05D004698 1.6e-228 796.2 553 74.1
THA.LOC104821617 Tarenaya hassleriana HOM05D003693 ORTHO05D004698 2.1e-228 795.8 561 73.3
AUR62009420 Chenopodium quinoa HOM05D003693 ORTHO05D004698 2.8e-228 795.4 560 73.8
Lsat_1_v5_gn_1_104980 Lactuca sativa HOM05D003693 ORTHO05D004698 2.8e-228 795.4 560 73.0
FAN02G0024 Fragaria x ananassa HOM05D003693 ORTHO05D004698 8.1e-228 793.9 561 74.0
FAN05G2538 Fragaria x ananassa HOM05D003693 ORTHO05D004698 8.1e-228 793.9 562 74.2
A03p43420 Brassica napus HOM05D003693 ORTHO05D004698 1.1e-227 793.5 561 73.6
TWI18G0649 Tripterygium wilfordii HOM05D003693 ORTHO05D004698 1.1e-227 793.5 561 73.1
Duzib128G1866 Durio zibethinus HOM05D003693 ORTHO05D004698 1.4e-227 793.1 622 67.2
RcHm_v2.0_Chr3g0447661 Rosa chinensis HOM05D003693 ORTHO05D004698 1.4e-227 793.1 561 74.0
TPR.G33878 Trifolium pratense HOM05D003693 ORTHO05D004698 1.8e-227 792.7 560 73.0
CAN.G1619.1 Capsicum annuum HOM05D003693 ORTHO05D004698 2.4e-227 792.3 560 73.2
Peaxi162Scf00071g01043 Petunia axillaris HOM05D003693 ORTHO05D004698 2.4e-227 792.3 560 73.0
BraA03t13480Z Brassica rapa HOM05D003693 ORTHO05D004698 3.1e-227 792.0 561 73.4
PGSC0003DMG400006778 Solanum tuberosum HOM05D003693 ORTHO05D004698 4.0e-227 791.6 560 73.2
vmacro13696 Vaccinium macrocarpon HOM05D003693 ORTHO05D004698 4.0e-227 791.6 594 70.9
BcaC01g03357 Brassica carinata HOM05D003693 ORTHO05D004698 5.2e-227 791.2 561 73.4
BolC3t17596H Brassica oleracea HOM05D003693 ORTHO05D004698 5.2e-227 791.2 561 73.4
arahy.Tifrunner.gnm1.ann1.55VZFW Arachis hypogaea HOM05D003693 ORTHO05D004698 8.9e-227 790.4 560 73.8
BraA07t28609Z Brassica rapa HOM05D003693 ORTHO05D004698 8.9e-227 790.4 560 73.4
Sopen01g034800 Solanum pennellii HOM05D003693 ORTHO05D004698 8.9e-227 790.4 560 73.0
BcaB03g14607 Brassica carinata HOM05D003693 ORTHO05D004698 1.2e-226 790.0 561 73.4
Solyc01g087870.4 Solanum lycopersicum HOM05D003693 ORTHO05D004698 1.2e-226 790.0 560 73.0
TPR.G34077 Trifolium pratense HOM05D003693 ORTHO05D004698 1.2e-226 790.0 570 71.8
GSVIVG01032211001 Vitis vinifera HOM05D003693 ORTHO05D004698 1.2e-226 790.0 634 66.7
arahy.Tifrunner.gnm1.ann1.RCZ69X Arachis hypogaea HOM05D003693 ORTHO05D004698 2.0e-226 789.3 560 73.8
MELO3C008557.2 Cucumis melo HOM05D003693 ORTHO05D004698 2.0e-226 789.3 568 71.8
BcaC06g35626 Brassica carinata HOM05D003693 ORTHO05D004698 3.4e-226 788.5 560 73.2
BcaB06g26591 Brassica carinata HOM05D003693 ORTHO05D004698 4.4e-226 788.1 560 73.0
A07p08260 Brassica napus HOM05D003693 ORTHO05D004698 5.8e-226 787.7 560 73.0
Cc02_g28770 Coffea canephora HOM05D003693 ORTHO05D004698 7.6e-226 787.3 566 72.1
C03p53370 Brassica napus HOM05D003693 ORTHO05D004698 9.9e-226 786.9 561 73.1
ECA248G0053 Erigeron canadensis HOM05D003693 ORTHO05D004698 3.8e-225 785.0 560 71.8
C07p12800 Brassica napus HOM05D003693 ORTHO05D004698 8.4e-225 783.9 561 73.1
Gorai.008G112800 Gossypium raimondii HOM05D003693 ORTHO05D004698 8.4e-225 783.9 600 68.8
TAR369G0556 Trochodendron aralioides HOM05D003693 ORTHO05D004698 1.4e-224 783.1 560 71.6
Sabra19G0063500 Salix brachista HOM05D003693 ORTHO05D004698 3.2e-224 781.9 597 69.2
BolC7t41766H Brassica oleracea HOM05D003693 ORTHO05D004698 7.1e-224 780.8 561 72.9
PGR031G3615 Punica granatum HOM05D003693 ORTHO05D004698 9.3e-224 780.4 560 71.6
HanXRQChr06g0179741 Helianthus annuus HOM05D003693 ORTHO05D004698 1.6e-223 779.6 560 71.2
Ah.10g038580 Amaranthus hybridus HOM05D003693 ORTHO05D004698 1.9e-221 772.7 561 72.5
HPP92_019436 Vanilla planifolia HOM05D003693 ORTHO05D004698 5.6e-221 771.2 560 71.6
Haze_19361 Corylus avellana HOM05D003693 ORTHO05D004698 3.4e-218 761.9 664 62.8
Nn2g12199 Nelumbo nucifera HOM05D003693 ORTHO05D004698 2.2e-217 759.2 529 73.2
DCAR_029706 Daucus carota HOM05D003693 ORTHO05D004698 4.9e-217 758.1 611 67.3
Actinidia08353 Actinidia chinensis HOM05D003693 ORTHO05D004698 1.1e-216 756.9 532 74.2
Zm00001eb163520 Zea mays HOM05D003693 ORTHO05D004698 4.2e-216 755.0 561 70.2
Gohir.D04G022000 Gossypium hirsutum HOM05D003693 ORTHO05D004698 9.6e-213 743.8 504 75.2
Lj8C726G3 Lonicera japonica HOM05D003693 ORTHO05D004698 4.8e-212 741.5 533 71.9
Eucgr.H01630 Eucalyptus grandis HOM05D003693 ORTHO05D004698 1.2e-210 736.9 526 71.7
AL8G20490 Arabidopsis lyrata HOM05D003693 ORTHO05D004698 4.9e-201 704.9 560 67.3
SalBow5G4957 Salvia bowleyana HOM05D003693 ORTHO05D004698 4.6e-199 698.4 572 66.1
Nitab4.5_0001676g0080 Nicotiana tabacum HOM05D003693 ORTHO05D004698 3.8e-193 678.7 518 69.5
AagrBONN_evm.TU.Sc2ySwM_344.1788 Anthoceros agrestis HOM05D003693 ORTHO05D004698 7.2e-192 674.5 475 73.5
Cre08.g375500 Chlamydomonas reinhardtii HOM05D003693 ORTHO05D004698 1.0e-174 617.5 568 58.5
MCO09G229 Micromonas commoda HOM05D003693 ORTHO05D004698 2.3e-174 616.3 586 56.0
CDE07G0727 Ceratophyllum demersum HOM05D003693 ORTHO05D004698 5.3e-171 605.1 488 67.4
Eucgr.H01633 Eucalyptus grandis HOM05D003693 ORTHO05D004698 5.7e-165 585.1 491 63.7
Cc00_g28470 Coffea canephora HOM05D003693 ORTHO05D004698 1.2e-159 567.4 414 73.7
PRCOL_00001226 Prasinoderma coloniale HOM05D003693 ORTHO05D004698 4.7e-159 565.5 590 52.5
Cc00_g27460 Coffea canephora HOM05D003693 ORTHO05D004698 7.5e-157 558.1 421 71.0
Cpa.g.sc39.19 Carica papaya HOM05D003693 ORTHO05D004698 5.4e-155 552.0 349 81.4
Os12g0131100 Oryza sativa ssp. japonica HOM05D003693 ORTHO05D004698 2.4e-139 500.0 321 78.8
Dinv09309 Davidia involucrata HOM05D003693 ORTHO05D004698 2.7e-138 496.5 356 72.2
AL8G20570 Arabidopsis lyrata HOM05D003693 ORTHO05D004698 7.8e-138 495.0 564 53.9
CSS0022704 Camellia sinensis var. sinensis HOM05D003693 ORTHO05D004698 2.1e-135 486.9 367 71.4
CSS0008601 Camellia sinensis var. sinensis HOM05D003693 ORTHO05D004698 1.4e-134 484.2 367 71.1
CDE08G0281 Ceratophyllum demersum HOM05D003693 ORTHO05D004698 3.1e-134 483.0 434 60.6
CSS0029083 Camellia sinensis var. sinensis HOM05D003693 ORTHO05D004698 3.0e-129 466.5 372 68.8
Manes.13G004500 Manihot esculenta HOM05D003693 ORTHO05D004698 3.0e-121 439.9 444 57.9
Eucgr.H01403 Eucalyptus grandis HOM05D003693 ORTHO05D004698 2.4e-115 420.2 390 60.8
Lsat_1_v5_gn_3_45201 Lactuca sativa HOM05D003693 ORTHO05D004698 2.4e-110 403.7 387 56.8
Lj9A641G59 Lonicera japonica HOM05D003693 ORTHO05D004698 6.9e-110 402.1 380 58.4
Aqoxy1G02791 Aquilegia oxysepala HOM05D003693 ORTHO05D004698 3.6e-103 379.8 306 67.0
Eucgr.H01634 Eucalyptus grandis HOM05D003693 ORTHO05D004698 2.4e-99 367.1 534 44.9
Eucgr.H01405 Eucalyptus grandis HOM05D003693 ORTHO05D004698 3.9e-97 359.8 561 43.3
Aqoxy2G01319 Aquilegia oxysepala HOM05D003693 ORTHO05D031300 3.1e-86 323.6 229 72.9
Haze_26883 Corylus avellana HOM05D003693 ORTHO05D004698 1.3e-84 318.2 469 41.2
CSS0010682 Camellia sinensis var. sinensis HOM05D003693 ORTHO05D004698 7.1e-83 312.4 234 70.9
Actinidia19423 Actinidia chinensis HOM05D003693 ORTHO05D004698 8.7e-81 305.4 560 40.2
Cc00_g31680 Coffea canephora HOM05D003693 ORTHO05D004698 2.5e-67 260.8 201 67.7
Aqoxy1G02790 Aquilegia oxysepala HOM05D003693 ORTHO05D004698 1.8e-62 244.6 150 82.0
HPP92_019410 Vanilla planifolia HOM05D003693 ORTHO05D004698 6.3e-55 219.5 163 69.3
Sed0025004 Sechium edule HOM05D003693 ORTHO05D004698 2.8e-47 194.1 120 79.2
CDE07G2079 Ceratophyllum demersum HOM05D003693 ORTHO05D004698 1.6e-45 188.3 148 65.5
CDE04G0915 Ceratophyllum demersum HOM05D003693 ORTHO05D021141 4.5e-45 186.8 148 64.9
CDE08G0573 Ceratophyllum demersum HOM05D003693 ORTHO05D004698 9.4e-43 179.1 110 80.9
RcHm_v2.0_Chr4g0412421 Rosa chinensis HOM05D003693 ORTHO05D004698 1.5e-40 171.8 146 61.0
Lj9A641G58 Lonicera japonica HOM05D003693 ORTHO05D004698 1.5e-35 155.2 160 57.5
Lsat_1_v5_gn_1_126760 Lactuca sativa HOM05D002996 ORTHO05D004698 1.7e-28 131.7 87 75.9
AagrBONN_evm.TU.Sc2ySwM_340.50 Anthoceros agrestis HOM05D003693 ORTHO05D004698 5.6e-27 126.7 219 39.7
Dinv23140 Davidia involucrata HOM05D004830 ORTHO05D005310 1.8e-25 121.7 74 81.1
CDE02G0831 Ceratophyllum demersum HOM05D003693 ORTHO05D004698 8.9e-25 119.4 70 84.3
Zm00001eb405240 Zea mays HOM05D003693 ORTHO05D004698 2.3e-20 104.8 87 65.5
Migut.C00049 Erythranthe guttata HOM05D003693 ORTHO05D004698 3.3e-19 100.9 63 73.0
Lsat_1_v5_gn_2_39580 Lactuca sativa HOM05D003693 ORTHO05D004698 3.1e-17 94.4 61 78.7
Os11g0133700 Oryza sativa ssp. japonica HOM05D003693 ORTHO05D031300 1.5e-16 92.0 83 53.0
Os12g0131150 Oryza sativa ssp. japonica HOM05D003693 ORTHO05D031300 1.5e-16 92.0 83 53.0
Cpa.g.c45131 Carica papaya HOM05D003693 ORTHO05D004698 8.9e-09 66.2 35 85.7
Lj3g0017821 Lotus japonicus HOM05D003693 ORTHO05D236454 1.4e-06 58.9 39 71.8
CDE01G0629 Ceratophyllum demersum HOM05D000880 ORTHO05D007053 1.9e-06 58.5 35 74.3
Nitab4.5_0001676g0090 Nicotiana tabacum HOM05D003693 ORTHO05D021141 7.1e-06 56.6 36 69.4


User provided reference genes

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