Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c1_10050 Physcomitrium patens HOM05D005608 ORTHO05D319324 6.4e-67 257.3 131 100.0
Pp3c11_8660 Physcomitrium patens HOM05D005608 ORTHO05D007543 9.3e-18 94.0 56 75.0
Gohir.A01G193800 Gossypium hirsutum HOM05D005608 ORTHO05D007543 1.1e-13 80.5 56 62.5
Gohir.D01G184100 Gossypium hirsutum HOM05D005608 ORTHO05D007543 1.1e-13 80.5 56 62.5
Gorai.002G227600 Gossypium raimondii HOM05D005608 ORTHO05D007543 1.1e-13 80.5 56 62.5
Duzib106G2070 Durio zibethinus HOM05D005608 ORTHO05D007543 4.1e-13 78.6 56 60.7
Thecc.05G148100 Theobroma cacao HOM05D005608 ORTHO05D007543 4.1e-13 78.6 56 60.7
Carub.0004s2382 Capsella rubella HOM05D005608 ORTHO05D007543 5.3e-13 78.2 56 60.7
MSTRG.19838 Avicennia marina HOM05D005608 ORTHO05D007543 9.0e-13 77.4 56 58.9
Ciclev10005572m.g Citrus clementina HOM05D005608 ORTHO05D007543 9.0e-13 77.4 56 62.5
Migut.J01725 Erythranthe guttata HOM05D005608 ORTHO05D007543 1.2e-12 77.0 56 60.7
Sc19g0008540 Simmondsia chinensis HOM05D005608 ORTHO05D007543 1.5e-12 76.6 56 60.7
BcaNung04068 Brassica carinata HOM05D005608 ORTHO05D007543 2.0e-12 76.3 56 58.9
Lalb_Chr06g0173501 Lupinus albus HOM05D005608 ORTHO05D007543 2.0e-12 76.3 56 60.7
MD12G1082500 Malus domestica HOM05D005608 ORTHO05D007543 2.0e-12 76.3 56 60.7
Ca_12243_v3 Cicer arietinum L. HOM05D005608 ORTHO05D007543 2.6e-12 75.9 56 62.5
Ca_12257_v3 Cicer arietinum L. HOM05D005608 ORTHO05D007543 2.6e-12 75.9 56 62.5
Medtr1g052175 Medicago truncatula HOM05D005608 ORTHO05D007543 2.6e-12 75.9 56 60.7
SalBow6G3992 Salvia bowleyana HOM05D005608 ORTHO05D007543 2.6e-12 75.9 62 56.5
Zm00001eb363240 Zea mays HOM05D005608 ORTHO05D007543 2.6e-12 75.9 59 57.6
A05p02350 Brassica napus HOM05D005608 ORTHO05D007543 3.4e-12 75.5 56 58.9
C04p02790 Brassica napus HOM05D005608 ORTHO05D007543 3.4e-12 75.5 56 58.9
BolC4t21919H Brassica oleracea HOM05D005608 ORTHO05D007543 3.4e-12 75.5 56 58.9
BraA05t19229Z Brassica rapa HOM05D005608 ORTHO05D007543 3.4e-12 75.5 56 58.9
Peaxi162Scf00130g00828 Petunia axillaris HOM05D005608 ORTHO05D007543 3.4e-12 75.5 56 60.7
Potri.006G047000 Populus trichocarpa HOM05D005608 ORTHO05D007543 3.4e-12 75.5 56 58.9
Sp4g23810 Schrenkiella parvula HOM05D005608 ORTHO05D007543 3.4e-12 75.5 56 58.9
MELO3C026333.2 Cucumis melo HOM05D005608 ORTHO05D007543 4.5e-12 75.1 56 57.1
CsaV3_4G027510 Cucumis sativus L. HOM05D005608 ORTHO05D007543 4.5e-12 75.1 56 57.1
Thhalv10017045m.g Eutrema salsugineum HOM05D005608 ORTHO05D007543 4.5e-12 75.1 56 58.9
Lsat_1_v5_gn_8_82180 Lactuca sativa HOM05D005608 ORTHO05D007543 4.5e-12 75.1 56 57.1
SEGI_13354 Sequoiadendron giganteum HOM05D005608 ORTHO05D007543 4.5e-12 75.1 56 60.7
CANSAT80G0897 Cannabis sativa HOM05D005608 ORTHO05D007543 5.9e-12 74.7 56 60.7
CANSAT80G2626 Cannabis sativa HOM05D005608 ORTHO05D007543 5.9e-12 74.7 56 60.7
CARHR136660 Cardamine hirsuta HOM05D005608 ORTHO05D007543 5.9e-12 74.7 56 58.9
Eucgr.K01713 Eucalyptus grandis HOM05D005608 ORTHO05D007543 5.9e-12 74.7 55 61.8
MD14G1077300 Malus domestica HOM05D005608 ORTHO05D007543 5.9e-12 74.7 56 58.9
Manes.08G052000 Manihot esculenta HOM05D005608 ORTHO05D007543 5.9e-12 74.7 56 60.7
Medtr1g052165 Medicago truncatula HOM05D005608 ORTHO05D048895 5.9e-12 74.7 60 58.3
Oeu017928.1 Olea europaea HOM05D005608 ORTHO05D007543 5.9e-12 74.7 56 57.1
Prupe.7G053400 Prunus persica HOM05D005608 ORTHO05D007543 5.9e-12 74.7 56 58.9
MSTRG.26133 Avicennia marina HOM05D005608 ORTHO05D007543 7.6e-12 74.3 56 57.1
Cpa.g.sc182.15 Carica papaya HOM05D005608 ORTHO05D007543 7.6e-12 74.3 56 57.1
HanXRQChr04g0125051 Helianthus annuus HOM05D005608 ORTHO05D007543 7.6e-12 74.3 56 57.1
Sed0023334 Sechium edule HOM05D005608 ORTHO05D007543 7.6e-12 74.3 56 57.1
Lj1A1125T63 Lonicera japonica HOM05D005608 ORTHO05D007543 1.0e-11 73.9 56 58.9
SalBow6G4364 Salvia bowleyana HOM05D005608 ORTHO05D007543 1.0e-11 73.9 56 58.9
SMO174G0027 Selaginella moellendorffii HOM05D005608 ORTHO05D007543 1.0e-11 73.9 56 57.1
Solyc04g016360.3 Solanum lycopersicum HOM05D005608 ORTHO05D007543 1.0e-11 73.9 56 60.7
Actinidia39202 Actinidia chinensis HOM05D005608 ORTHO05D007543 1.3e-11 73.6 56 55.4
AT2G41530 Arabidopsis thaliana HOM05D005608 ORTHO05D007543 1.3e-11 73.6 56 58.9
Medtr4g008660 Medicago truncatula HOM05D005608 ORTHO05D007543 1.3e-11 73.6 56 57.1
PSO339G6269 Papaver somniferum HOM05D005608 ORTHO05D007543 1.3e-11 73.6 79 48.1
Sopen04g008450 Solanum pennellii HOM05D005608 ORTHO05D007543 1.3e-11 73.6 56 60.7
Atru.chr1.1230 Acer truncatum HOM05D005608 ORTHO05D007543 1.7e-11 73.2 56 58.9
CiPaw.09G040300 Carya illinoinensis HOM05D005608 ORTHO05D007543 1.7e-11 73.2 56 57.1
AUR62026096 Chenopodium quinoa HOM05D005608 ORTHO05D007543 1.7e-11 73.2 56 57.1
Eucgr.K02019 Eucalyptus grandis HOM05D005608 ORTHO05D007543 1.7e-11 73.2 56 60.7
FvH4_6g24520 Fragaria vesca HOM05D005608 ORTHO05D007543 1.7e-11 73.2 56 58.9
FAN05G0975 Fragaria x ananassa HOM05D005608 ORTHO05D007543 1.7e-11 73.2 56 58.9
FAN14G1555 Fragaria x ananassa HOM05D005608 ORTHO05D007543 1.7e-11 73.2 56 58.9
QL07p003736 Quercus lobata HOM05D005608 ORTHO05D007543 1.7e-11 73.2 56 55.4
TPR.G19657 Trifolium pratense HOM05D005608 ORTHO05D007543 1.7e-11 73.2 56 58.9
TAR369G0194 Trochodendron aralioides HOM05D005608 ORTHO05D007543 1.7e-11 73.2 56 55.4
CAN.G676.7 Capsicum annuum HOM05D005608 ORTHO05D007543 2.2e-11 72.8 56 60.7
ECA236G2378 Erigeron canadensis HOM05D005608 ORTHO05D007543 2.2e-11 72.8 56 55.4
RcHm_v2.0_Chr3g0483631 Rosa chinensis HOM05D005608 ORTHO05D007543 2.2e-11 72.8 56 58.9
TAR369G0715 Trochodendron aralioides HOM05D005608 ORTHO05D007543 2.2e-11 72.8 56 55.4
unitig_21.g20519 Utricularia gibba HOM05D005608 ORTHO05D007543 2.2e-11 72.8 56 57.1
GSVIVG01033232001 Vitis vinifera HOM05D005608 ORTHO05D007543 2.2e-11 72.8 56 57.1
BcaB01g03463 Brassica carinata HOM05D005608 ORTHO05D007543 2.9e-11 72.4 56 57.1
BcaC01g05330 Brassica carinata HOM05D005608 ORTHO05D007543 2.9e-11 72.4 56 57.1
A03p23310 Brassica napus HOM05D005608 ORTHO05D007543 2.9e-11 72.4 56 57.1
C03p27830 Brassica napus HOM05D005608 ORTHO05D007543 2.9e-11 72.4 56 57.1
BolC3t15154H Brassica oleracea HOM05D005608 ORTHO05D007543 2.9e-11 72.4 56 57.1
BraA03t11549Z Brassica rapa HOM05D005608 ORTHO05D007543 2.9e-11 72.4 56 57.1
Cc06_g18100 Coffea canephora HOM05D005608 ORTHO05D007543 2.9e-11 72.4 56 58.9
FAN02G1028 Fragaria x ananassa HOM05D005608 ORTHO05D007543 2.9e-11 72.4 56 58.9
PSO384G3225 Papaver somniferum HOM05D005608 ORTHO05D007543 2.9e-11 72.4 79 46.8
Sabra06G0032700 Salix brachista HOM05D005608 ORTHO05D007543 2.9e-11 72.4 56 57.1
CBR_g12387 Chara braunii HOM05D005608 ORTHO05D007543 3.8e-11 72.0 60 55.0
AUR62024510 Chenopodium quinoa HOM05D005608 ORTHO05D007543 3.8e-11 72.0 56 55.4
DCAR_013613 Daucus carota HOM05D005608 ORTHO05D007543 3.8e-11 72.0 56 57.1
Mapoly0020s0136 Marchantia polymorpha HOM05D005608 ORTHO05D007543 3.8e-11 72.0 57 61.4
Nitab4.5_0000826g0060 Nicotiana tabacum HOM05D005608 ORTHO05D007543 3.8e-11 72.0 56 57.1
Nitab4.5_0001618g0150 Nicotiana tabacum HOM05D005608 ORTHO05D007543 3.8e-11 72.0 56 57.1
Hund24681 Selenicereus undatus HOM05D005608 ORTHO05D007543 3.8e-11 72.0 79 46.8
ATR0721G011 Amborella trichopoda HOM05D005608 ORTHO05D007543 5.0e-11 71.6 56 57.1
Glyma.02G186700 Glycine max HOM05D005608 ORTHO05D007543 5.0e-11 71.6 56 57.1
PGSC0003DMG401012699 Solanum tuberosum HOM05D005608 ORTHO05D007543 5.0e-11 71.6 56 58.9
TPR.G23055 Trifolium pratense HOM05D005608 ORTHO05D048895 5.0e-11 71.6 55 58.2
Aa31LG1G23580 Aethionema arabicum HOM05D005608 ORTHO05D007543 6.5e-11 71.2 57 57.9
Glyma.10G106900 Glycine max HOM05D005608 ORTHO05D007543 6.5e-11 71.2 56 57.1
THA.LOC104801987 Tarenaya hassleriana HOM05D005608 ORTHO05D007543 6.5e-11 71.2 79 45.6
TAR633G2234 Trochodendron aralioides HOM05D005608 ORTHO05D007543 6.5e-11 71.2 56 55.4
AL4G39630 Arabidopsis lyrata HOM05D005608 ORTHO05D007543 8.4e-11 70.9 56 55.4
Nn2g15128 Nelumbo nucifera HOM05D005608 ORTHO05D007543 8.4e-11 70.9 56 55.4
Nitab4.5_0000636g0050 Nicotiana tabacum HOM05D005608 ORTHO05D007543 8.4e-11 70.9 56 57.1
EL10Ac3g07137 Beta vulgaris HOM05D005608 ORTHO05D007543 1.1e-10 70.5 79 46.8
Phvul.007G250500 Phaseolus vulgaris HOM05D005608 ORTHO05D007543 1.1e-10 70.5 56 55.4
arahy.Tifrunner.gnm1.ann1.QZL5XH Arachis hypogaea HOM05D005608 ORTHO05D007543 1.4e-10 70.1 56 55.4
arahy.Tifrunner.gnm1.ann1.RCN63F Arachis hypogaea HOM05D005608 ORTHO05D007543 1.4e-10 70.1 56 55.4
CSS0026365 Camellia sinensis var. sinensis HOM05D005608 ORTHO05D007543 1.4e-10 70.1 56 55.4
CDE05G0378 Ceratophyllum demersum HOM05D005608 ORTHO05D007543 1.4e-10 70.1 56 57.1
VMungo0720G2960 Vigna mungo HOM05D005608 ORTHO05D007543 1.4e-10 70.1 56 55.4
TWI77G0221 Tripterygium wilfordii HOM05D005608 ORTHO05D007543 1.9e-10 69.7 56 57.1
Hma1.2p1_0110F.1_g052840 Hydrangea macrophylla HOM05D005608 ORTHO05D007543 2.5e-10 69.3 56 53.6
Hma1.2p1_1997F.1_g310445 Hydrangea macrophylla HOM05D005608 ORTHO05D007543 2.5e-10 69.3 56 53.6
SGA_v2.0_scaffold273G46432 Striga asiatica HOM05D005608 ORTHO05D007543 4.2e-10 68.6 56 53.6
Aqoxy2G00245 Aquilegia oxysepala HOM05D005608 ORTHO05D007543 7.2e-10 67.8 56 51.8
Os01g0939700 Oryza sativa ssp. japonica HOM05D005608 ORTHO05D007543 7.2e-10 67.8 56 51.8
vmacro21968 Vaccinium macrocarpon HOM05D005608 ORTHO05D007543 7.2e-10 67.8 56 53.6
Cfa016779 Carpinus fangiana HOM05D005608 ORTHO05D007543 1.2e-09 67.0 56 53.6
Haze_19791 Corylus avellana HOM05D005608 ORTHO05D007543 1.2e-09 67.0 56 53.6
Haze_19795 Corylus avellana HOM05D005608 ORTHO05D007543 1.2e-09 67.0 56 53.6
Lj5g0018305 Lotus japonicus HOM05D005608 ORTHO05D007543 1.6e-09 66.6 56 53.6
MBI19_g29889_MAGBIO Magnolia biondii HOM05D005608 ORTHO05D007543 2.1e-09 66.2 56 55.4
Rhsim03G0028900 Rhododendron simsii HOM05D005608 ORTHO05D007543 4.6e-09 65.1 59 50.8
Peaxi162Scf00130g00829 Petunia axillaris HOM05D005608 ORTHO05D007543 7.9e-09 64.3 56 51.8
HPP92_001434 Vanilla planifolia HOM05D005608 ORTHO05D007543 7.9e-09 64.3 53 54.7
Cre03.g158800 Chlamydomonas reinhardtii HOM05D005608 ORTHO05D007543 3.0e-08 62.4 56 51.8
Sed0008486 Sechium edule HOM05D005608 ORTHO05D007543 9.7e-07 57.4 56 48.2


User provided reference genes

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