Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c19_6980 Physcomitrium patens HOM05D003937 ORTHO05D004583 0.0e+00 1468.4 754 100.0
Mapoly0074s0020 Marchantia polymorpha HOM05D003937 ORTHO05D004583 9.4e-22 109.8 176 46.6
AagrBONN_evm.TU.Sc2ySwM_117.297 Anthoceros agrestis HOM05D003937 ORTHO05D004583 1.4e-20 105.9 159 43.4
SMO347G0358 Selaginella moellendorffii HOM05D003937 ORTHO05D004583 4.5e-16 90.9 172 39.0
SEGI_28645 Sequoiadendron giganteum HOM05D003937 ORTHO05D004583 6.1e-13 80.5 166 39.8
AUR62011702 Chenopodium quinoa HOM05D003937 ORTHO05D004583 1.0e-12 79.7 282 31.2
AUR62012919 Chenopodium quinoa HOM05D003937 ORTHO05D004583 2.3e-12 78.6 282 29.8
GSVIVG01026659001 Vitis vinifera HOM05D003937 ORTHO05D004583 2.2e-10 72.0 135 41.5
TAR625G1504 Trochodendron aralioides HOM05D003937 ORTHO05D004583 2.9e-10 71.6 196 32.1
CDE05G2511 Ceratophyllum demersum HOM05D003937 ORTHO05D004583 4.9e-10 70.9 73 50.7
Nn5g30963 Nelumbo nucifera HOM05D003937 ORTHO05D004583 6.4e-10 70.5 136 34.6
CDE06G0218 Ceratophyllum demersum HOM05D003937 ORTHO05D004583 1.1e-09 69.7 116 34.5
ECA233G5124 Erigeron canadensis HOM05D003937 ORTHO05D004583 1.1e-09 69.7 120 37.5
Ca_16692_v3 Cicer arietinum L. HOM05D003937 ORTHO05D004583 1.4e-09 69.3 138 37.7
MBI08_g12714_MAGBIO Magnolia biondii HOM05D003937 ORTHO05D004583 1.8e-09 68.9 125 39.2
Solyc04g082450.3 Solanum lycopersicum HOM05D003937 ORTHO05D004583 1.8e-09 68.9 135 37.8
Aqoxy5G01031 Aquilegia oxysepala HOM05D003937 ORTHO05D004583 3.2e-09 68.2 84 47.6
Migut.N02961 Erythranthe guttata HOM05D003937 ORTHO05D004583 7.0e-09 67.0 70 48.6
Sc18g0006030 Simmondsia chinensis HOM05D003937 ORTHO05D004583 7.0e-09 67.0 87 43.7
SEGI_41193 Sequoiadendron giganteum HOM05D003937 ORTHO05D004583 9.2e-09 66.6 148 35.1
GSVIVG01009897001 Vitis vinifera HOM05D003937 ORTHO05D004583 9.2e-09 66.6 74 44.6
CiPaw.05G091700 Carya illinoinensis HOM05D003937 ORTHO05D004583 1.2e-08 66.2 134 36.6
Nitab4.5_0000588g0020 Nicotiana tabacum HOM05D003937 ORTHO05D004583 1.2e-08 66.2 140 34.3
VMungo0540G0354 Vigna mungo HOM05D003937 ORTHO05D004583 1.2e-08 66.2 140 35.7
CDE06G2177 Ceratophyllum demersum HOM05D003937 ORTHO05D004583 1.6e-08 65.9 80 47.5
Glyma.06G000500 Glycine max HOM05D003937 ORTHO05D004583 1.6e-08 65.9 288 28.8
Potri.009G166100 Populus trichocarpa HOM05D003937 ORTHO05D004583 1.6e-08 65.9 136 34.6
arahy.Tifrunner.gnm1.ann1.388DF8 Arachis hypogaea HOM05D003937 ORTHO05D004583 2.0e-08 65.5 189 29.6
CAN.G311.122 Capsicum annuum HOM05D003937 ORTHO05D004583 2.7e-08 65.1 147 33.3
Nn6g31719 Nelumbo nucifera HOM05D003937 ORTHO05D004583 2.7e-08 65.1 163 35.0
QL11p055907 Quercus lobata HOM05D003937 ORTHO05D004583 2.7e-08 65.1 160 34.4
Zm00001eb420050 Zea mays HOM05D003937 ORTHO05D004583 2.7e-08 65.1 66 51.5
EL10Ac9g21245 Beta vulgaris HOM05D003937 ORTHO05D004583 3.5e-08 64.7 159 33.3
Actinidia37917 Actinidia chinensis HOM05D003937 ORTHO05D004583 4.6e-08 64.3 71 45.1
arahy.Tifrunner.gnm1.ann1.G18Z51 Arachis hypogaea HOM05D003937 ORTHO05D004583 4.6e-08 64.3 189 29.6
Os09g0549400 Oryza sativa ssp. japonica HOM05D003937 ORTHO05D004583 4.6e-08 64.3 87 42.5
Oeu046353.1 Olea europaea HOM05D003937 ORTHO05D004583 5.9e-08 63.9 147 34.0
PSO541G3051 Papaver somniferum HOM05D003937 ORTHO05D004583 5.9e-08 63.9 199 30.2
HPP92_021046 Vanilla planifolia HOM05D003937 ORTHO05D004583 5.9e-08 63.9 67 47.8
Cc10_g00590 Coffea canephora HOM05D003937 ORTHO05D004583 7.8e-08 63.5 168 33.9
Lalb_Chr08g0246851 Lupinus albus HOM05D003937 ORTHO05D004583 7.8e-08 63.5 201 30.3
Os04g0136900 Oryza sativa ssp. japonica HOM05D003937 ORTHO05D004583 7.8e-08 63.5 65 50.8
QL11p055606 Quercus lobata HOM05D003937 ORTHO05D004583 1.0e-07 63.2 160 33.8
Aqoxy6G01687 Aquilegia oxysepala HOM05D003937 ORTHO05D004583 1.3e-07 62.8 67 47.8
Phvul.006G042500 Phaseolus vulgaris HOM05D003937 ORTHO05D004583 1.3e-07 62.8 284 28.9
DCAR_013923 Daucus carota HOM05D003937 ORTHO05D004583 1.7e-07 62.4 124 36.3
Glyma.04G000700 Glycine max HOM05D003937 ORTHO05D004583 1.7e-07 62.4 141 34.8
MSTRG.22102 Avicennia marina HOM05D003937 ORTHO05D004583 2.3e-07 62.0 68 48.5
Dinv31951 Davidia involucrata HOM05D003937 ORTHO05D004583 2.3e-07 62.0 92 45.7
Gohir.A01G174900 Gossypium hirsutum HOM05D003937 ORTHO05D004583 2.3e-07 62.0 67 49.3
Gohir.A03G209600 Gossypium hirsutum HOM05D003937 ORTHO05D004583 2.3e-07 62.0 138 34.1
Gohir.D02G231300 Gossypium hirsutum HOM05D003937 ORTHO05D004583 2.3e-07 62.0 138 34.8
HanXRQChr13g0409731 Helianthus annuus HOM05D003937 ORTHO05D004583 2.3e-07 62.0 107 37.4
MD06G1009100 Malus domestica HOM05D003937 ORTHO05D004583 2.3e-07 62.0 120 37.5
PSO675G5999 Papaver somniferum HOM05D003937 ORTHO05D004583 2.3e-07 62.0 169 33.1
Sopen04g036060 Solanum pennellii HOM05D003937 ORTHO05D004583 2.3e-07 62.0 174 32.2
MSTRG.24495 Avicennia marina HOM05D003937 ORTHO05D004583 3.0e-07 61.6 212 28.8
Rhsim07G0256300 Rhododendron simsii HOM05D003937 ORTHO05D004583 3.0e-07 61.6 70 45.7
SalBow6G3106 Salvia bowleyana HOM05D003937 ORTHO05D004583 3.0e-07 61.6 163 27.0
ATR0661G493 Amborella trichopoda HOM05D003937 ORTHO05D004583 3.9e-07 61.2 133 36.1
arahy.Tifrunner.gnm1.ann1.BKYH70 Arachis hypogaea HOM05D003937 ORTHO05D004583 3.9e-07 61.2 261 26.1
ClCG02G009960 Citrullus lanatus HOM05D003937 ORTHO05D004583 3.9e-07 61.2 79 48.1
Gohir.D01G166000 Gossypium hirsutum HOM05D003937 ORTHO05D004583 5.0e-07 60.8 126 38.1
Gorai.002G206500 Gossypium raimondii HOM05D003937 ORTHO05D004583 5.0e-07 60.8 126 38.1
Lsat_1_v5_gn_8_26360 Lactuca sativa HOM05D003937 ORTHO05D004583 6.6e-07 60.5 71 43.7
Sed0010938 Sechium edule HOM05D003937 ORTHO05D004583 6.6e-07 60.5 79 48.1
TWI75G1612 Tripterygium wilfordii HOM05D003937 ORTHO05D004583 6.6e-07 60.5 69 46.4
Ciclev10028873m.g Citrus clementina HOM05D003937 ORTHO05D004583 8.6e-07 60.1 128 39.1
COL.COLO4_17933 Corchorus olitorius HOM05D003937 ORTHO05D004583 8.6e-07 60.1 142 35.9
HanXRQChr12g0367561 Helianthus annuus HOM05D003937 ORTHO05D004583 8.6e-07 60.1 71 45.1
Manes.04G067300 Manihot esculenta HOM05D003937 ORTHO05D004583 8.6e-07 60.1 181 33.7
SGA_v2.0_scaffold364G49977 Striga asiatica HOM05D003937 ORTHO05D004583 8.6e-07 60.1 107 40.2
Lj4A806T76 Lonicera japonica HOM05D003937 ORTHO05D004583 1.1e-06 59.7 191 31.9
Sed0014450 Sechium edule HOM05D003937 ORTHO05D004583 1.1e-06 59.7 136 33.1
CsaV3_6G010160 Cucumis sativus L. HOM05D003937 ORTHO05D004583 1.5e-06 59.3 124 38.7
Hma1.2p1_0271F.1_g108900 Hydrangea macrophylla HOM05D003937 ORTHO05D004583 1.5e-06 59.3 126 36.5
FAN20G0177 Fragaria x ananassa HOM05D003937 ORTHO05D004583 1.9e-06 58.9 67 49.3
RcHm_v2.0_Chr6g0280681 Rosa chinensis HOM05D003937 ORTHO05D004583 1.9e-06 58.9 125 35.2
Thecc.02G044800 Theobroma cacao HOM05D003937 ORTHO05D004583 1.9e-06 58.9 137 33.6
TAR381G0291 Trochodendron aralioides HOM05D003937 ORTHO05D004583 1.9e-06 58.9 162 32.1
BcaB03g12256 Brassica carinata HOM05D003937 ORTHO05D004583 2.5e-06 58.5 123 35.0
FvH4_2g16620 Fragaria vesca HOM05D003937 ORTHO05D004583 2.5e-06 58.5 130 36.2
FAN15G3453 Fragaria x ananassa HOM05D003937 ORTHO05D004583 2.5e-06 58.5 130 36.2
FAN24G0691 Fragaria x ananassa HOM05D003937 ORTHO05D004583 2.5e-06 58.5 130 36.2
BraA08t34322Z Brassica rapa HOM05D003937 ORTHO05D004583 3.3e-06 58.2 90 40.0
CANSAT25G1278 Cannabis sativa HOM05D003937 ORTHO05D004583 3.3e-06 58.2 100 33.0
Duzib052G0838 Durio zibethinus HOM05D003937 ORTHO05D004583 3.3e-06 58.2 139 34.5
MD05G1134400 Malus domestica HOM05D003937 ORTHO05D004583 3.3e-06 58.2 119 36.1
RcHm_v2.0_Chr7g0215391 Rosa chinensis HOM05D003937 ORTHO05D004583 3.3e-06 58.2 114 37.7
MSTRG.16955 Avicennia marina HOM05D003937 ORTHO05D004583 4.3e-06 57.8 123 35.8
Cpa.g.sc20.204 Carica papaya HOM05D003937 ORTHO05D004583 4.3e-06 57.8 143 30.1
Dinv41880 Davidia involucrata HOM05D001927 ORTHO05D001972 4.3e-06 57.8 113 36.3
Zm00001eb104250 Zea mays HOM05D003937 ORTHO05D004583 4.3e-06 57.8 66 48.5
FAN27G2747 Fragaria x ananassa HOM05D003937 ORTHO05D004583 7.3e-06 57.0 131 35.1
Sp7g37440 Schrenkiella parvula HOM05D003937 ORTHO05D004583 7.3e-06 57.0 71 42.3
Psat5g000520 Pisum sativum HOM05D003937 ORTHO05D004583 9.5e-06 56.6 79 41.8


User provided reference genes

Program Settings