Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c19_6070 Physcomitrium patens HOM05D006104 ORTHO05D008303 1.3e-274 949.1 488 100.0
AagrBONN_evm.TU.Sc2ySwM_368.1984 Anthoceros agrestis HOM05D006104 ORTHO05D008303 8.3e-128 461.5 373 65.4
SMO364G0667 Selaginella moellendorffii HOM05D006104 ORTHO05D008303 1.5e-121 440.7 383 60.6
Mapoly0068s0059 Marchantia polymorpha HOM05D006104 ORTHO05D008303 3.5e-118 429.5 404 58.9
ATR0124G053 Amborella trichopoda HOM05D006104 ORTHO05D008303 1.2e-115 421.0 395 57.5
Hund22221 Selenicereus undatus HOM05D006104 ORTHO05D008303 2.3e-114 416.8 388 57.0
MBI06_g37978_MAGBIO Magnolia biondii HOM05D006104 ORTHO05D008303 5.2e-114 415.6 387 57.9
AUR62037537 Chenopodium quinoa HOM05D006104 ORTHO05D008303 1.2e-113 414.5 427 53.6
Peaxi162Scf00784g00028 Petunia axillaris HOM05D006104 ORTHO05D008303 2.6e-113 413.3 377 58.1
AUR62035547 Chenopodium quinoa HOM05D006104 ORTHO05D008303 9.8e-113 411.4 432 52.5
Gorai.008G055000 Gossypium raimondii HOM05D006104 ORTHO05D008303 2.2e-112 410.2 381 58.0
Gohir.D12G051700 Gossypium hirsutum HOM05D006104 ORTHO05D008303 6.4e-112 408.7 438 52.3
EL10Ac1g01448 Beta vulgaris HOM05D006104 ORTHO05D008303 8.3e-112 408.3 371 57.1
Solyc02g036470.4 Solanum lycopersicum HOM05D006104 ORTHO05D008303 1.1e-111 407.9 393 55.0
Sopen02g011830 Solanum pennellii HOM05D006104 ORTHO05D008303 1.9e-111 407.1 369 57.2
PGSC0003DMG400021455 Solanum tuberosum HOM05D006104 ORTHO05D008303 2.4e-111 406.8 388 55.4
Ah.06g191390 Amaranthus hybridus HOM05D006104 ORTHO05D008303 3.2e-111 406.4 410 54.6
arahy.Tifrunner.gnm1.ann1.B0P6V2 Arachis hypogaea HOM05D006104 ORTHO05D008303 4.1e-111 406.0 367 56.9
Nitab4.5_0008083g0020 Nicotiana tabacum HOM05D006104 ORTHO05D008303 4.1e-111 406.0 386 56.2
arahy.Tifrunner.gnm1.ann1.W9ZMNH Arachis hypogaea HOM05D006104 ORTHO05D008303 7.0e-111 405.2 367 56.9
Dinv19095 Davidia involucrata HOM05D006104 ORTHO05D008303 9.2e-111 404.8 365 57.8
Nitab4.5_0002297g0090 Nicotiana tabacum HOM05D006104 ORTHO05D008303 1.2e-110 404.4 370 57.0
Thecc.04G056600 Theobroma cacao HOM05D006104 ORTHO05D008303 1.2e-110 404.4 396 55.8
PSO063G5766 Papaver somniferum HOM05D006104 ORTHO05D008303 2.0e-110 403.7 427 53.2
Potri.012G145300 Populus trichocarpa HOM05D006104 ORTHO05D008303 2.0e-110 403.7 401 55.4
Duzib138G0961 Durio zibethinus HOM05D006104 ORTHO05D008303 7.8e-110 401.7 370 57.6
Lsat_1_v5_gn_8_114940 Lactuca sativa HOM05D006104 ORTHO05D008303 1.0e-109 401.4 423 53.4
Lj6g0001971 Lotus japonicus HOM05D006104 ORTHO05D008303 1.0e-109 401.4 369 56.9
Rhsim10G0186700 Rhododendron simsii HOM05D006104 ORTHO05D008303 1.3e-109 401.0 377 56.8
CANSAT78G2105 Cannabis sativa HOM05D006104 ORTHO05D008303 2.3e-109 400.2 365 58.4
ECA232G1605 Erigeron canadensis HOM05D006104 ORTHO05D008303 3.9e-109 399.4 369 58.0
THA.LOC104820927 Tarenaya hassleriana HOM05D006104 ORTHO05D008303 3.9e-109 399.4 386 56.2
RcHm_v2.0_Chr7g0242021 Rosa chinensis HOM05D006104 ORTHO05D008303 5.0e-109 399.1 385 55.8
Zm00001eb044830 Zea mays HOM05D006104 ORTHO05D008303 1.5e-108 397.5 370 57.3
MSTRG.15618 Avicennia marina HOM05D006104 ORTHO05D008303 2.5e-108 396.7 383 56.4
Carub.0003s0179 Capsella rubella HOM05D006104 ORTHO05D008303 2.5e-108 396.7 394 56.3
CDE04G1404 Ceratophyllum demersum HOM05D006104 ORTHO05D008303 2.5e-108 396.7 431 52.7
FvH4_5g39720 Fragaria vesca HOM05D006104 ORTHO05D008303 2.5e-108 396.7 382 54.5
FAN18G3652 Fragaria x ananassa HOM05D006104 ORTHO05D008303 2.5e-108 396.7 382 54.5
BraA01t04624Z Brassica rapa HOM05D006104 ORTHO05D008303 5.6e-108 395.6 388 56.2
Cpa.g.sc108.21 Carica papaya HOM05D006104 ORTHO05D008303 7.3e-108 395.2 366 55.7
PGR042G1876 Punica granatum HOM05D006104 ORTHO05D008303 7.3e-108 395.2 379 56.7
BNapus_Darmor_BZH_scaffold_122p00170 Brassica napus HOM05D006104 ORTHO05D008303 1.2e-107 394.4 398 55.8
BolC1t05884H Brassica oleracea HOM05D006104 ORTHO05D008303 1.6e-107 394.0 371 56.9
Migut.K01201 Erythranthe guttata HOM05D006104 ORTHO05D008303 1.6e-107 394.0 388 54.6
Sabra12G0109100 Salix brachista HOM05D006104 ORTHO05D008303 2.1e-107 393.7 400 54.8
Aa31LG5G13170 Aethionema arabicum HOM05D006104 ORTHO05D008303 2.8e-107 393.3 382 56.8
HanXRQChr15g0486461 Helianthus annuus HOM05D006104 ORTHO05D008303 2.8e-107 393.3 416 51.9
Thhalv10020801m.g Eutrema salsugineum HOM05D006104 ORTHO05D008303 3.6e-107 392.9 390 55.4
Glyma.11G202900 Glycine max HOM05D006104 ORTHO05D008303 3.6e-107 392.9 379 54.6
CBR_g22386 Chara braunii HOM05D006104 ORTHO05D008303 4.7e-107 392.5 415 54.2
Sp3g01720 Schrenkiella parvula HOM05D006104 ORTHO05D008303 4.7e-107 392.5 388 54.6
ClCG01G008400 Citrullus lanatus HOM05D006104 ORTHO05D008303 8.1e-107 391.7 388 53.9
CARHR076690 Cardamine hirsuta HOM05D006104 ORTHO05D008303 1.1e-106 391.3 392 55.4
AT3G02690 Arabidopsis thaliana HOM05D006104 ORTHO05D008303 1.4e-106 391.0 311 65.0
SGA_v2.0_scaffold199G41251 Striga asiatica HOM05D006104 ORTHO05D008303 4.0e-106 389.4 373 57.6
AL3G12080 Arabidopsis lyrata HOM05D006104 ORTHO05D008303 2.0e-105 387.1 366 57.1
Glyma.18G047900 Glycine max HOM05D006104 ORTHO05D008303 2.6e-105 386.7 379 53.8
Gohir.A12G053200 Gossypium hirsutum HOM05D006104 ORTHO05D008303 2.6e-105 386.7 349 59.6
DCAR_003391 Daucus carota HOM05D006104 ORTHO05D008303 3.4e-105 386.3 323 60.4
TAR371G0041 Trochodendron aralioides HOM05D006104 ORTHO05D008303 3.4e-105 386.3 312 62.5
Eucgr.J01650 Eucalyptus grandis HOM05D006104 ORTHO05D008303 7.5e-105 385.2 316 61.4
MCO16G393 Micromonas commoda HOM05D006104 ORTHO05D008303 7.5e-105 385.2 368 56.2
MD09G1187600 Malus domestica HOM05D006104 ORTHO05D008303 9.8e-105 384.8 384 53.1
HPP92_022205 Vanilla planifolia HOM05D006104 ORTHO05D008303 1.3e-104 384.4 362 57.7
Haze_14041 Corylus avellana HOM05D006104 ORTHO05D008303 6.4e-104 382.1 382 52.6
Oeu058858.1 Olea europaea HOM05D006104 ORTHO05D008303 6.4e-104 382.1 353 55.5
Ciclev10011871m.g Citrus clementina HOM05D006104 ORTHO05D008303 8.3e-104 381.7 373 54.4
TWI74G1645 Tripterygium wilfordii HOM05D006104 ORTHO05D008303 8.3e-104 381.7 377 54.9
QL02p055508 Quercus lobata HOM05D006104 ORTHO05D008303 1.9e-103 380.6 358 55.9
Cfa008019 Carpinus fangiana HOM05D006104 ORTHO05D008303 3.2e-103 379.8 384 52.3
Ca_15100_v3 Cicer arietinum L. HOM05D006104 ORTHO05D008303 7.1e-103 378.6 422 50.0
CiPaw.03G009900 Carya illinoinensis HOM05D006104 ORTHO05D008303 9.2e-103 378.3 384 53.4
Nn4g25028 Nelumbo nucifera HOM05D006104 ORTHO05D008303 8.6e-101 371.7 379 54.4
Aqoxy3G04351 Aquilegia oxysepala HOM05D006104 ORTHO05D008303 2.5e-100 370.2 369 53.4
Medtr3g063240 Medicago truncatula HOM05D006104 ORTHO05D008303 2.5e-100 370.2 325 56.6
Atru.chr1.2189 Acer truncatum HOM05D006104 ORTHO05D008303 5.6e-100 369.0 307 60.3
CAN.G304.9 Capsicum annuum HOM05D006104 ORTHO05D008303 2.8e-99 366.7 369 52.6
Cc07_g12610 Coffea canephora HOM05D006104 ORTHO05D008303 2.3e-98 363.6 295 63.1
Phvul.006G083500 Phaseolus vulgaris HOM05D006104 ORTHO05D008303 5.2e-98 362.5 373 53.4
FAN08G3450 Fragaria x ananassa HOM05D006104 ORTHO05D008303 6.8e-98 362.1 461 45.1
GSVIVG01033198001 Vitis vinifera HOM05D006104 ORTHO05D008303 8.9e-98 361.7 295 62.7
Medtr3g063250 Medicago truncatula HOM05D006104 ORTHO05D008303 4.4e-97 359.4 381 51.4
Lj4A249G56 Lonicera japonica HOM05D006104 ORTHO05D008303 1.3e-96 357.8 322 59.3
Pp3c7_24690 Physcomitrium patens HOM05D006104 ORTHO05D008303 3.8e-96 356.3 323 55.4
VMungo0540G0919 Vigna mungo HOM05D006104 ORTHO05D008303 4.9e-96 355.9 371 53.4
unitig_748.g7253 Utricularia gibba HOM05D006104 ORTHO05D008303 2.4e-95 353.6 387 53.5
Sc09g0004650 Simmondsia chinensis HOM05D006104 ORTHO05D008303 7.1e-95 352.1 346 56.1
BNapus_Darmor_BZH_scaffold_99p00200 Brassica napus HOM05D006104 ORTHO05D008303 1.7e-93 347.4 281 64.1
Lalb_Chr18g0053941 Lupinus albus HOM05D006104 ORTHO05D008303 5.1e-93 345.9 369 49.9
Actinidia32997 Actinidia chinensis HOM05D006104 ORTHO05D008303 2.5e-92 343.6 381 50.1
EL10Ac4g08870 Beta vulgaris HOM05D006104 ORTHO05D008303 8.9e-90 335.1 264 63.3
MELO3C025108.2 Cucumis melo HOM05D006104 ORTHO05D008303 7.6e-89 332.0 535 39.8
PRCOL_00000403 Prasinoderma coloniale HOM05D006104 ORTHO05D008303 1.7e-88 330.9 297 62.3
FAN04G1807 Fragaria x ananassa HOM05D006104 ORTHO05D008303 2.4e-82 310.5 483 40.4
vmacro20444 Vaccinium macrocarpon HOM05D006104 ORTHO05D008303 5.8e-81 305.8 359 49.9
SalBow5G0256 Salvia bowleyana HOM05D006104 ORTHO05D008303 1.4e-79 301.2 387 46.3
Cre12.g507950 Chlamydomonas reinhardtii HOM05D006104 ORTHO05D008303 6.0e-78 295.8 386 44.6
Hma1.2p1_0085F.1_g043890 Hydrangea macrophylla HOM05D006104 ORTHO05D008303 7.4e-76 288.9 339 47.8
SEGI_11411 Sequoiadendron giganteum HOM05D006104 ORTHO05D008303 1.4e-74 284.6 270 57.0
CSS0044834 Camellia sinensis var. sinensis HOM05D006104 ORTHO05D008303 3.4e-73 280.0 309 48.9
Manes.01G125800 Manihot esculenta HOM05D006104 ORTHO05D008303 3.5e-70 270.0 279 51.3
CsaV3_5G024350 Cucumis sativus L. HOM05D006104 ORTHO05D008303 1.3e-69 268.1 288 52.4
COL.COLO4_13439 Corchorus olitorius HOM05D006104 ORTHO05D008303 2.8e-67 260.4 265 54.3
Sed0008277 Sechium edule HOM05D006104 ORTHO05D008303 2.8e-67 260.4 267 53.9
Prupe.8G267800 Prunus persica HOM05D006104 ORTHO05D008303 2.6e-65 253.8 261 52.1
SEGI_16808 Sequoiadendron giganteum HOM05D006104 ORTHO05D008303 5.3e-58 229.6 208 59.1
TPR.G37386 Trifolium pratense HOM05D006104 ORTHO05D008303 4.5e-57 226.5 218 54.6
Os10g0493900 Oryza sativa ssp. japonica HOM05D006104 ORTHO05D008303 5.5e-55 219.5 146 69.9
QL02p056562 Quercus lobata HOM05D006104 ORTHO05D008303 2.7e-54 217.2 145 68.3
TPR.G14061 Trifolium pratense HOM05D006104 ORTHO05D008303 7.2e-47 192.6 206 51.9
arahy.Tifrunner.gnm1.ann1.4P08NV Arachis hypogaea HOM05D006104 ORTHO05D008303 7.2e-39 166.0 193 48.2
Psat5g144680 Pisum sativum HOM05D006104 ORTHO05D008303 1.7e-32 144.8 205 41.5
BraA02t04668Z Brassica rapa HOM05D006104 ORTHO05D008303 1.3e-24 118.6 135 51.1
arahy.Tifrunner.gnm1.ann1.2Q0DPQ Arachis hypogaea HOM05D006104 ORTHO05D008303 2.0e-20 104.8 120 45.0
arahy.Tifrunner.gnm1.ann1.LG1UYC Arachis hypogaea HOM05D006104 ORTHO05D008303 6.3e-19 99.8 136 39.7
Psat5g144720 Pisum sativum HOM05D006104 ORTHO05D008303 1.4e-18 98.6 112 44.6
Psat0s2701g0160 Pisum sativum HOM05D006104 ORTHO05D000113 2.5e-15 87.8 147 38.8
arahy.Tifrunner.gnm1.ann1.12AD17 Arachis hypogaea HOM05D000052 ORTHO05D000046 3.0e-13 80.9 61 59.0
Psat7g173760 Pisum sativum HOM05D006104 ORTHO05D008303 7.0e-10 69.7 69 47.8
Ca_29260_v3 Cicer arietinum L. HOM05D006104 ORTHO05D149040 7.8e-09 66.2 296 21.6
Psat4g208480 Pisum sativum HOM05D006104 ORTHO05D008303 1.0e-08 65.9 35 85.7


User provided reference genes

Program Settings