Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c19_6050 Physcomitrium patens HOM05D005532 ORTHO05D006873 7.1e-212 740.3 377 100.0
Mapoly0066s0102 Marchantia polymorpha HOM05D005532 ORTHO05D006873 1.7e-112 410.2 321 64.8
AagrBONN_evm.TU.Sc2ySwM_117.1967 Anthoceros agrestis HOM05D005532 ORTHO05D006873 2.5e-108 396.4 323 63.2
TWI60G0905 Tripterygium wilfordii HOM05D005532 ORTHO05D006873 7.4e-108 394.8 320 62.5
Aqoxy2G00249 Aquilegia oxysepala HOM05D005532 ORTHO05D006873 4.8e-107 392.1 320 60.9
CiPaw.13G154000 Carya illinoinensis HOM05D005532 ORTHO05D006873 2.6e-105 386.3 344 59.3
COL.COLO4_36473 Corchorus olitorius HOM05D005532 ORTHO05D006873 3.4e-105 386.0 320 60.6
Potri.009G050100 Populus trichocarpa HOM05D005532 ORTHO05D006873 3.4e-105 386.0 320 60.6
Actinidia23981 Actinidia chinensis HOM05D005532 ORTHO05D006873 1.3e-104 384.0 343 59.5
Sabra09G0036700 Salix brachista HOM05D005532 ORTHO05D006873 1.7e-104 383.6 320 60.3
Duzib168G1386 Durio zibethinus HOM05D005532 ORTHO05D006873 2.2e-104 383.3 320 60.6
TPR.G22568 Trifolium pratense HOM05D005532 ORTHO05D006873 2.2e-104 383.3 320 61.6
MD11G1188300 Malus domestica HOM05D005532 ORTHO05D006873 2.9e-104 382.9 320 60.6
Medtr4g076230 Medicago truncatula HOM05D005532 ORTHO05D006873 2.9e-104 382.9 322 61.2
CANSAT54G2729 Cannabis sativa HOM05D005532 ORTHO05D006873 3.8e-104 382.5 320 60.3
FAN25G0557 Fragaria x ananassa HOM05D005532 ORTHO05D006873 8.4e-104 381.3 320 60.0
Manes.14G005300 Manihot esculenta HOM05D005532 ORTHO05D006873 1.1e-103 380.9 316 60.8
TAR636G1137 Trochodendron aralioides HOM05D005532 ORTHO05D006873 1.1e-103 380.9 363 55.1
Nn7g36397 Nelumbo nucifera HOM05D005532 ORTHO05D006873 2.4e-103 379.8 317 61.2
Thecc.09G240600 Theobroma cacao HOM05D005532 ORTHO05D006873 2.4e-103 379.8 320 60.3
Phvul.011G078100 Phaseolus vulgaris HOM05D005532 ORTHO05D006873 3.2e-103 379.4 319 60.2
Cpa.g.sc892.3 Carica papaya HOM05D005532 ORTHO05D006873 4.2e-103 379.0 320 59.1
Dinv36220 Davidia involucrata HOM05D005532 ORTHO05D006873 4.2e-103 379.0 320 60.3
PSO339G2797 Papaver somniferum HOM05D005532 ORTHO05D006873 5.5e-103 378.6 315 61.9
FvH4_3g28350 Fragaria vesca HOM05D005532 ORTHO05D006873 7.1e-103 378.3 320 59.7
FAN16G3415 Fragaria x ananassa HOM05D005532 ORTHO05D006873 7.1e-103 378.3 320 59.7
Glyma.12G021500 Glycine max HOM05D005532 ORTHO05D006873 9.3e-103 377.9 319 59.9
arahy.Tifrunner.gnm1.ann1.7Y4SN4 Arachis hypogaea HOM05D005532 ORTHO05D006873 1.2e-102 377.5 321 60.1
AUR62039849 Chenopodium quinoa HOM05D005532 ORTHO05D006873 1.2e-102 377.5 320 60.0
VMungo1127G1594 Vigna mungo HOM05D005532 ORTHO05D006873 1.6e-102 377.1 319 59.9
HanXRQChr13g0401441 Helianthus annuus HOM05D005532 ORTHO05D006873 2.1e-102 376.7 317 58.7
Lj3g0021729 Lotus japonicus HOM05D005532 ORTHO05D006873 2.1e-102 376.7 320 59.7
SGA_v2.0_scaffold29G12299 Striga asiatica HOM05D005532 ORTHO05D006873 2.1e-102 376.7 320 59.4
PSO384G4693 Papaver somniferum HOM05D005532 ORTHO05D006873 2.7e-102 376.3 315 62.2
GSVIVG01031546001 Vitis vinifera HOM05D005532 ORTHO05D006873 2.7e-102 376.3 318 59.1
Lsat_1_v5_gn_6_26061 Lactuca sativa HOM05D005532 ORTHO05D006873 4.6e-102 375.6 329 57.1
Cfa009820 Carpinus fangiana HOM05D005532 ORTHO05D006873 6.0e-102 375.2 317 59.6
AUR62000162 Chenopodium quinoa HOM05D005532 ORTHO05D006873 6.0e-102 375.2 320 59.4
ECA233G0258 Erigeron canadensis HOM05D005532 ORTHO05D006873 6.0e-102 375.2 317 59.0
Prupe.4G256000 Prunus persica HOM05D005532 ORTHO05D006873 6.0e-102 375.2 316 60.1
arahy.Tifrunner.gnm1.ann1.3FY9NR Arachis hypogaea HOM05D005532 ORTHO05D006873 7.9e-102 374.8 321 59.5
Glyma.11G095400 Glycine max HOM05D005532 ORTHO05D006873 7.9e-102 374.8 319 58.9
Oeu043291.1 Olea europaea HOM05D005532 ORTHO05D006873 7.9e-102 374.8 319 59.9
Zm00001eb093270 Zea mays HOM05D005532 ORTHO05D006873 7.9e-102 374.8 316 60.8
Nitab4.5_0005230g0080 Nicotiana tabacum HOM05D005532 ORTHO05D006873 1.0e-101 374.4 319 60.5
CSS0007885 Camellia sinensis var. sinensis HOM05D005532 ORTHO05D006873 1.3e-101 374.0 320 58.4
Cc01_g02130 Coffea canephora HOM05D005532 ORTHO05D006873 1.3e-101 374.0 316 60.8
Gohir.D07G126700 Gossypium hirsutum HOM05D005532 ORTHO05D006873 1.8e-101 373.6 320 60.0
Gorai.001G136900 Gossypium raimondii HOM05D005532 ORTHO05D006873 1.8e-101 373.6 320 59.4
Lalb_Chr19g0139721 Lupinus albus HOM05D005532 ORTHO05D006873 3.0e-101 372.9 317 59.9
Peaxi162Scf00004g00378 Petunia axillaris HOM05D005532 ORTHO05D006873 3.0e-101 372.9 319 60.5
AT1G50450 Arabidopsis thaliana HOM05D005532 ORTHO05D006873 3.9e-101 372.5 317 59.6
Carub.0001s3953 Capsella rubella HOM05D005532 ORTHO05D006873 3.9e-101 372.5 317 59.6
Thhalv10011503m.g Eutrema salsugineum HOM05D005532 ORTHO05D006873 5.1e-101 372.1 317 59.6
Nitab4.5_0011829g0040 Nicotiana tabacum HOM05D005532 ORTHO05D006873 6.7e-101 371.7 319 59.9
HanXRQChr02g0051521 Helianthus annuus HOM05D005532 ORTHO05D006873 8.7e-101 371.3 317 58.0
Ciclev10015321m.g Citrus clementina HOM05D005532 ORTHO05D006873 1.1e-100 370.9 317 61.2
PGR119G0320 Punica granatum HOM05D005532 ORTHO05D006873 1.5e-100 370.5 317 59.6
RcHm_v2.0_Chr5g0053381 Rosa chinensis HOM05D005532 ORTHO05D006873 1.9e-100 370.2 361 54.6
Sp1g37280 Schrenkiella parvula HOM05D005532 ORTHO05D006873 2.5e-100 369.8 317 59.0
Actinidia11667 Actinidia chinensis HOM05D005532 ORTHO05D006873 4.3e-100 369.0 328 58.5
Sopen11g024960 Solanum pennellii HOM05D005532 ORTHO05D006873 5.6e-100 368.6 343 57.1
BcaC08g43214 Brassica carinata HOM05D005532 ORTHO05D006873 7.4e-100 368.2 317 59.6
FAN21G2390 Fragaria x ananassa HOM05D005532 ORTHO05D006873 7.4e-100 368.2 320 57.8
HPP92_011271 Vanilla planifolia HOM05D005532 ORTHO05D006873 7.4e-100 368.2 319 57.7
AL1G58090 Arabidopsis lyrata HOM05D005532 ORTHO05D006873 9.6e-100 367.9 317 59.0
Eucgr.J00735 Eucalyptus grandis HOM05D005532 ORTHO05D006873 9.6e-100 367.9 317 58.4
Migut.D00633 Erythranthe guttata HOM05D005532 ORTHO05D006873 1.3e-99 367.5 319 58.9
PGSC0003DMG400038188 Solanum tuberosum HOM05D005532 ORTHO05D006873 1.3e-99 367.5 343 57.1
CAN.G870.1 Capsicum annuum HOM05D005532 ORTHO05D006873 2.1e-99 366.7 319 59.2
Psat7g179480 Pisum sativum HOM05D005532 ORTHO05D006873 2.1e-99 366.7 353 55.0
unitig_52.g16880 Utricularia gibba HOM05D005532 ORTHO05D006873 2.8e-99 366.3 319 58.6
Atru.chr3.2637 Acer truncatum HOM05D005532 ORTHO05D006873 3.7e-99 365.9 347 55.6
Solyc11g065240.2 Solanum lycopersicum HOM05D005532 ORTHO05D006873 1.1e-98 364.4 319 58.9
EL10Ac4g10189 Beta vulgaris HOM05D005532 ORTHO05D006873 2.4e-98 363.2 335 57.6
RhsimUnG0131400 Rhododendron simsii HOM05D005532 ORTHO05D006873 3.1e-98 362.8 331 57.7
THA.LOC104821584 Tarenaya hassleriana HOM05D005532 ORTHO05D006873 5.3e-98 362.1 329 58.1
BcaB07g33482 Brassica carinata HOM05D005532 ORTHO05D006873 6.9e-98 361.7 317 58.4
Hund07456 Selenicereus undatus HOM05D005532 ORTHO05D006873 9.0e-98 361.3 317 58.4
Os12g0137200 Oryza sativa ssp. japonica HOM05D005532 ORTHO05D006873 2.0e-97 360.1 329 56.8
A06p03120 Brassica napus HOM05D005532 ORTHO05D006873 5.8e-97 358.6 317 58.7
C06p05640 Brassica napus HOM05D005532 ORTHO05D006873 5.8e-97 358.6 317 59.0
BolC6t35671H Brassica oleracea HOM05D005532 ORTHO05D006873 5.8e-97 358.6 317 59.0
BraA06t23525Z Brassica rapa HOM05D005532 ORTHO05D006873 5.8e-97 358.6 317 58.7
Rhsim01G0193400 Rhododendron simsii HOM05D005532 ORTHO05D006873 7.6e-97 358.2 342 55.0
Lj1A319T38 Lonicera japonica HOM05D005532 ORTHO05D006873 3.2e-95 352.8 379 50.4
Gohir.A07G122800 Gossypium hirsutum HOM05D005532 ORTHO05D006873 4.2e-95 352.4 298 60.4
Haze_23183 Corylus avellana HOM05D005532 ORTHO05D006873 2.1e-94 350.1 370 51.9
SMO367G1041 Selaginella moellendorffii HOM05D005532 ORTHO05D006873 7.9e-94 348.2 337 52.2
Hund07457 Selenicereus undatus HOM05D005532 ORTHO05D006873 7.9e-94 348.2 316 57.0
CDE04G2597 Ceratophyllum demersum HOM05D005532 ORTHO05D006873 5.1e-93 345.5 327 53.2
MELO3C014575.2 Cucumis melo HOM05D005532 ORTHO05D006873 8.7e-93 344.7 319 55.5
Sed0019503 Sechium edule HOM05D005532 ORTHO05D006873 3.3e-92 342.8 319 54.9
Lsat_1_v5_gn_6_26080 Lactuca sativa HOM05D005532 ORTHO05D006873 4.3e-92 342.4 326 52.5
Aa31LG10G3830 Aethionema arabicum HOM05D005532 ORTHO05D006873 1.1e-90 337.8 319 56.4
Aa31LG10G3840 Aethionema arabicum HOM05D005532 ORTHO05D006873 5.9e-89 332.0 320 52.5
arahy.Tifrunner.gnm1.ann1.PT8LN6 Arachis hypogaea HOM05D005532 ORTHO05D006873 8.5e-88 328.2 320 52.2
HPP92_011292 Vanilla planifolia HOM05D005532 ORTHO05D006873 3.2e-87 326.2 273 58.2
Sc09g0000860 Simmondsia chinensis HOM05D005532 ORTHO05D006873 9.3e-87 324.7 298 58.4
Haze_23184 Corylus avellana HOM05D005532 ORTHO05D006873 3.6e-86 322.8 332 52.7
Hma1.2p1_2169F.1_g315920 Hydrangea macrophylla HOM05D005532 ORTHO05D006873 1.3e-83 314.3 259 61.4
QL01p018283 Quercus lobata HOM05D005532 ORTHO05D006873 1.5e-81 307.4 338 51.8
ClCG02G023050 Citrullus lanatus HOM05D005532 ORTHO05D006873 1.3e-80 304.3 331 50.5
AUR62039851 Chenopodium quinoa HOM05D005532 ORTHO05D006873 1.7e-80 303.9 277 54.9
vmacro14267 Vaccinium macrocarpon HOM05D005532 ORTHO05D006873 4.2e-79 299.3 467 40.7
Sc09g0000870 Simmondsia chinensis HOM05D005532 ORTHO05D006873 1.6e-78 297.4 270 58.5
unitig_62.g23891 Utricularia gibba HOM05D005532 ORTHO05D006873 2.1e-78 297.0 280 56.1
DCAR_023774 Daucus carota HOM05D005532 ORTHO05D006873 2.7e-78 296.6 319 49.5
ATR0721G047 Amborella trichopoda HOM05D005532 ORTHO05D006873 1.7e-75 287.3 228 62.3
Cre16.g666050 Chlamydomonas reinhardtii HOM05D005532 ORTHO05D006873 3.7e-75 286.2 335 49.9
CsaV3_6G039150 Cucumis sativus L. HOM05D005532 ORTHO05D006873 5.3e-74 282.3 263 54.0
MBI05_g22559_MAGBIO Magnolia biondii HOM05D005532 ORTHO05D006873 1.1e-71 274.6 330 47.6
Ah.04g162030 Amaranthus hybridus HOM05D005532 ORTHO05D006873 2.1e-70 270.4 315 48.9
CARHR040460 Cardamine hirsuta HOM05D005532 ORTHO05D006873 3.1e-66 256.5 214 58.9
MCO10G311 Micromonas commoda HOM05D005532 ORTHO05D006873 1.6e-62 244.2 326 41.4
Migut.D00646 Erythranthe guttata HOM05D005532 ORTHO05D006873 2.8e-51 206.8 252 45.2
SGA_v2.0_scaffold29G12269 Striga asiatica HOM05D005532 ORTHO05D006873 2.2e-48 197.2 314 36.6
CBR_g3868 Chara braunii HOM05D000019 ORTHO05D000048 6.3e-43 179.1 169 55.6
arahy.Tifrunner.gnm1.ann1.E0YEAW Arachis hypogaea HOM05D005532 ORTHO05D006873 7.0e-42 175.6 218 45.0
arahy.Tifrunner.gnm1.ann1.C2XCQ2 Arachis hypogaea HOM05D005532 ORTHO05D006873 1.9e-39 167.5 136 61.8
SalBow6G6953 Salvia bowleyana HOM05D005532 ORTHO05D006873 3.4e-36 156.8 144 55.6
PRCOL_00003498 Prasinoderma coloniale HOM05D005532 ORTHO05D006873 2.3e-32 144.1 263 34.6
PRCOL_00002357 Prasinoderma coloniale HOM05D005532 ORTHO05D006873 4.9e-27 126.3 320 31.6
SEGI_01123 Sequoiadendron giganteum HOM05D005532 ORTHO05D006873 7.0e-26 122.5 79 72.2
Ciclev10017011m.g Citrus clementina HOM05D005532 ORTHO05D006873 3.9e-24 116.7 140 48.6
TPR.G22569 Trifolium pratense HOM05D005532 ORTHO05D006873 4.6e-17 93.2 102 50.0
arahy.Tifrunner.gnm1.ann1.MM015B Arachis hypogaea HOM05D005532 ORTHO05D006873 7.8e-17 92.4 96 47.9
SEGI_35247 Sequoiadendron giganteum HOM05D005532 ORTHO05D006873 8.6e-16 89.0 64 62.5
Os11g0140700 Oryza sativa ssp. japonica HOM05D005532 ORTHO05D006873 5.4e-10 69.7 62 56.5
SEGI_01014 Sequoiadendron giganteum HOM05D005532 ORTHO05D006873 5.4e-10 69.7 88 42.0
CsaV3_6G039160 Cucumis sativus L. HOM05D005532 ORTHO05D006873 1.6e-09 68.2 56 58.9
Hma1.2p1_2169F.1_g315910 Hydrangea macrophylla HOM05D005532 ORTHO05D006873 3.9e-08 63.5 71 43.7
HanXRQChr09g0270661 Helianthus annuus HOM05D000715 ORTHO05D000024 5.1e-08 63.2 57 49.1
Zm00001eb093260 Zea mays HOM05D005990 ORTHO05D007908 1.1e-07 62.0 68 50.0
CSS0040461 Camellia sinensis var. sinensis HOM05D005532 ORTHO05D006873 9.6e-07 58.9 49 59.2


User provided reference genes

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