Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c19_5830 Physcomitrium patens HOM05D004575 ORTHO05D005774 2.2e-82 308.9 154 100.0
AagrBONN_evm.TU.Sc2ySwM_228.2396 Anthoceros agrestis HOM05D004575 ORTHO05D005774 6.3e-66 254.2 142 86.6
Mapoly0012s0171 Marchantia polymorpha HOM05D004575 ORTHO05D005774 1.1e-65 253.4 142 88.0
SEGI_30669 Sequoiadendron giganteum HOM05D004575 ORTHO05D005774 1.6e-64 249.6 142 85.9
Dinv42882 Davidia involucrata HOM05D004575 ORTHO05D005774 1.3e-63 246.5 147 83.0
Dinv43218 Davidia involucrata HOM05D004575 ORTHO05D005774 2.9e-63 245.4 145 82.8
arahy.Tifrunner.gnm1.ann1.Y2RET6 Arachis hypogaea HOM05D004575 ORTHO05D005774 5.0e-63 244.6 147 82.3
Glyma.11G226500 Glycine max HOM05D004575 ORTHO05D005774 6.6e-63 244.2 147 81.6
Phvul.001G239800 Phaseolus vulgaris HOM05D004575 ORTHO05D005774 6.6e-63 244.2 147 81.6
VMungo1383G0542 Vigna mungo HOM05D004575 ORTHO05D005774 6.6e-63 244.2 147 81.6
Prupe.7G260200 Prunus persica HOM05D004575 ORTHO05D005774 1.1e-62 243.4 142 84.5
RcHm_v2.0_Chr2g0085961 Rosa chinensis HOM05D004575 ORTHO05D005774 1.1e-62 243.4 142 84.5
CDE05G3286 Ceratophyllum demersum HOM05D004575 ORTHO05D005774 1.5e-62 243.0 142 85.2
CDE05G0409 Ceratophyllum demersum HOM05D004575 ORTHO05D005774 1.9e-62 242.7 142 84.5
Ca_03494_v3 Cicer arietinum L. HOM05D004575 ORTHO05D005774 1.9e-62 242.7 147 81.0
HanXRQChr15g0473271 Helianthus annuus HOM05D004575 ORTHO05D005774 1.9e-62 242.7 147 81.0
Psat5g127440 Pisum sativum HOM05D004575 ORTHO05D005774 1.9e-62 242.7 147 81.0
ATR0626G208 Amborella trichopoda HOM05D004575 ORTHO05D005774 2.5e-62 242.3 142 83.1
CSS0046088 Camellia sinensis var. sinensis HOM05D004575 ORTHO05D005774 2.5e-62 242.3 142 83.8
Hma1.2p1_0171F.1_g075580 Hydrangea macrophylla HOM05D004575 ORTHO05D005774 2.5e-62 242.3 142 84.5
MSTRG.6119 Avicennia marina HOM05D004575 ORTHO05D005774 3.3e-62 241.9 142 83.8
FvH4_1g01170 Fragaria vesca HOM05D004575 ORTHO05D005774 3.3e-62 241.9 142 83.8
MD02G1009800 Malus domestica HOM05D004575 ORTHO05D005774 3.3e-62 241.9 142 83.8
Cfa020846 Carpinus fangiana HOM05D004575 ORTHO05D005774 4.2e-62 241.5 142 83.8
Manes.14G111600 Manihot esculenta HOM05D004575 ORTHO05D005774 4.2e-62 241.5 142 83.1
Medtr3g070070 Medicago truncatula HOM05D004575 ORTHO05D005774 4.2e-62 241.5 147 81.0
Atru.chr7.129 Acer truncatum HOM05D004575 ORTHO05D005774 5.5e-62 241.1 142 83.8
Aqoxy7G03458 Aquilegia oxysepala HOM05D004575 ORTHO05D005774 5.5e-62 241.1 142 83.8
AUR62039306 Chenopodium quinoa HOM05D004575 ORTHO05D005774 5.5e-62 241.1 142 83.8
Duzib187G1707 Durio zibethinus HOM05D004575 ORTHO05D005774 5.5e-62 241.1 142 83.1
Lalb_Chr12g0198611 Lupinus albus HOM05D004575 ORTHO05D005774 5.5e-62 241.1 147 81.0
Nn2g12311 Nelumbo nucifera HOM05D004575 ORTHO05D005774 5.5e-62 241.1 142 83.1
Ah.09g232410 Amaranthus hybridus HOM05D004575 ORTHO05D005774 7.2e-62 240.7 142 83.1
CBR_g31075 Chara braunii HOM05D004575 ORTHO05D005774 7.2e-62 240.7 140 82.1
Manes.06G037700 Manihot esculenta HOM05D004575 ORTHO05D005774 7.2e-62 240.7 142 83.1
Zm00001eb271220 Zea mays HOM05D004575 ORTHO05D005774 7.2e-62 240.7 142 83.1
Duzib150G0006 Durio zibethinus HOM05D004575 ORTHO05D005774 9.5e-62 240.4 142 83.1
Glyma.18G030800 Glycine max HOM05D004575 ORTHO05D005774 9.5e-62 240.4 147 80.3
Oeu050476.1 Olea europaea HOM05D004575 ORTHO05D005774 9.5e-62 240.4 142 83.1
PSO170G2264 Papaver somniferum HOM05D004575 ORTHO05D005774 9.5e-62 240.4 142 83.8
Potri.018G110000 Populus trichocarpa HOM05D004575 ORTHO05D005774 9.5e-62 240.4 142 83.1
Thecc.09G033600 Theobroma cacao HOM05D004575 ORTHO05D005774 9.5e-62 240.4 142 83.1
CiPaw.15G174300 Carya illinoinensis HOM05D004575 ORTHO05D005774 1.2e-61 240.0 142 83.1
ECA246G3736 Erigeron canadensis HOM05D004575 ORTHO05D005774 1.2e-61 240.0 147 80.3
Nitab4.5_0000147g0360 Nicotiana tabacum HOM05D004575 ORTHO05D005774 1.2e-61 240.0 142 83.1
Potri.006G187300 Populus trichocarpa HOM05D004575 ORTHO05D005774 1.2e-61 240.0 142 83.1
TWI34G1141 Tripterygium wilfordii HOM05D004575 ORTHO05D005774 1.2e-61 240.0 142 83.8
GSVIVG01023596001 Vitis vinifera HOM05D004575 ORTHO05D005774 1.2e-61 240.0 142 83.1
Cc06_g15230 Coffea canephora HOM05D004575 ORTHO05D005774 1.6e-61 239.6 142 83.1
unitig_0.g919 Utricularia gibba HOM05D004575 ORTHO05D005774 1.6e-61 239.6 140 81.4
Cpa.g.sc46.126 Carica papaya HOM05D004575 ORTHO05D005774 2.1e-61 239.2 142 82.4
Gohir.A05G051600 Gossypium hirsutum HOM05D004575 ORTHO05D005774 2.8e-61 238.8 142 82.4
Gohir.A13G184800 Gossypium hirsutum HOM05D004575 ORTHO05D005774 2.8e-61 238.8 142 83.1
Gohir.D13G191200 Gossypium hirsutum HOM05D004575 ORTHO05D005774 2.8e-61 238.8 142 83.1
Lj6g0023555 Lotus japonicus HOM05D004575 ORTHO05D005774 2.8e-61 238.8 147 79.6
Nitab4.5_0006294g0110 Nicotiana tabacum HOM05D004575 ORTHO05D005774 2.8e-61 238.8 142 82.4
Peaxi162Scf00811g00111 Petunia axillaris HOM05D004575 ORTHO05D005774 2.8e-61 238.8 142 82.4
Migut.K00340 Erythranthe guttata HOM05D004575 ORTHO05D005774 3.6e-61 238.4 147 79.6
Os01g0708600 Oryza sativa ssp. japonica HOM05D004575 ORTHO05D005774 3.6e-61 238.4 142 81.7
ClCG06G001160 Citrullus lanatus HOM05D004575 ORTHO05D005774 6.1e-61 237.7 142 81.7
CsaV3_6G007090 Cucumis sativus L. HOM05D004575 ORTHO05D005774 6.1e-61 237.7 142 81.7
Gorai.009G054900 Gossypium raimondii HOM05D004575 ORTHO05D005774 6.1e-61 237.7 142 81.7
Lsat_1_v5_gn_6_106621 Lactuca sativa HOM05D004575 ORTHO05D005774 6.1e-61 237.7 147 78.9
Sed0010156 Sechium edule HOM05D004575 ORTHO05D005774 6.1e-61 237.7 142 81.7
TWI32G0637 Tripterygium wilfordii HOM05D004575 ORTHO05D005774 6.1e-61 237.7 142 83.1
AL8G34130 Arabidopsis lyrata HOM05D004575 ORTHO05D005774 8.0e-61 237.3 141 82.3
SalBow1G0111 Salvia bowleyana HOM05D004575 ORTHO05D005774 8.0e-61 237.3 142 81.0
SMO356G0367 Selaginella moellendorffii HOM05D004575 ORTHO05D005774 8.0e-61 237.3 142 78.9
THA.LOC104813540 Tarenaya hassleriana HOM05D004575 ORTHO05D005774 8.0e-61 237.3 142 81.7
CANSAT11G1798 Cannabis sativa HOM05D004575 ORTHO05D005774 1.0e-60 236.9 142 81.0
Sed0010445 Sechium edule HOM05D004575 ORTHO05D005774 1.0e-60 236.9 142 81.7
Aa31LG3G13850 Aethionema arabicum HOM05D004575 ORTHO05D005774 1.4e-60 236.5 141 81.6
BolC2t07482H Brassica oleracea HOM05D004575 ORTHO05D005774 1.4e-60 236.5 141 81.6
Thhalv10014736m.g Eutrema salsugineum HOM05D004575 ORTHO05D005774 1.4e-60 236.5 141 81.6
Lj6g0023669 Lotus japonicus HOM05D004575 ORTHO05D005774 1.4e-60 236.5 147 78.9
Sp6g19710 Schrenkiella parvula HOM05D004575 ORTHO05D005774 1.4e-60 236.5 141 81.6
Solyc04g015050.3 Solanum lycopersicum HOM05D004575 ORTHO05D005774 1.4e-60 236.5 142 81.7
Sopen04g007070 Solanum pennellii HOM05D004575 ORTHO05D005774 1.4e-60 236.5 142 81.7
AT5G58030 Arabidopsis thaliana HOM05D004575 ORTHO05D005774 1.8e-60 236.1 141 81.6
BolC3t13904H Brassica oleracea HOM05D004575 ORTHO05D005774 1.8e-60 236.1 141 81.6
Carub.0008s1858 Capsella rubella HOM05D004575 ORTHO05D005774 1.8e-60 236.1 141 81.6
CAN.G1263.31 Capsicum annuum HOM05D004575 ORTHO05D005774 1.8e-60 236.1 142 81.7
CARHR271840 Cardamine hirsuta HOM05D004575 ORTHO05D005774 1.8e-60 236.1 141 81.6
PGSC0003DMG400015006 Solanum tuberosum HOM05D004575 ORTHO05D005774 1.8e-60 236.1 142 81.7
Nn8g39815 Nelumbo nucifera HOM05D004575 ORTHO05D005774 2.3e-60 235.7 142 81.7
CSS0038411 Camellia sinensis var. sinensis HOM05D004575 ORTHO05D005774 3.0e-60 235.3 137 83.2
Pp3c22_3220 Physcomitrium patens HOM05D004575 ORTHO05D005774 4.0e-60 235.0 141 86.5
Gorai.013G217200 Gossypium raimondii HOM05D004575 ORTHO05D005774 5.2e-60 234.6 142 81.7
THA.LOC104817827 Tarenaya hassleriana HOM05D004575 ORTHO05D005774 5.2e-60 234.6 142 81.0
TAR625G1476 Trochodendron aralioides HOM05D004575 ORTHO05D005774 5.2e-60 234.6 142 80.3
Gohir.D05G053100 Gossypium hirsutum HOM05D004575 ORTHO05D005774 8.9e-60 233.8 142 81.0
CSS0012079 Camellia sinensis var. sinensis HOM05D004575 ORTHO05D005774 1.5e-59 233.0 137 82.5
HPP92_023290 Vanilla planifolia HOM05D004575 ORTHO05D005774 1.5e-59 233.0 142 79.6
Ciclev10009392m.g Citrus clementina HOM05D004575 ORTHO05D005774 2.0e-59 232.6 134 85.1
DCAR_029638 Daucus carota HOM05D004575 ORTHO05D005774 2.0e-59 232.6 134 85.1
Eucgr.C00362 Eucalyptus grandis HOM05D004575 ORTHO05D005774 3.4e-59 231.9 132 85.6
Sabra06G0143200 Salix brachista HOM05D004575 ORTHO05D005774 4.4e-59 231.5 135 83.7
AUR62022430 Chenopodium quinoa HOM05D004575 ORTHO05D005774 5.7e-59 231.1 132 85.6
Haze_19234 Corylus avellana HOM05D004575 ORTHO05D005774 5.7e-59 231.1 133 85.0
Dinv41397 Davidia involucrata HOM05D004575 ORTHO05D005774 5.7e-59 231.1 136 83.1
Lsat_1_v5_gn_9_77921 Lactuca sativa HOM05D004575 ORTHO05D005774 5.7e-59 231.1 138 81.9
QL02p092713 Quercus lobata HOM05D004575 ORTHO05D005774 1.3e-58 229.9 132 84.8
MELO3C022418.2 Cucumis melo HOM05D004575 ORTHO05D005774 1.7e-58 229.6 133 83.5
TAR636G1369 Trochodendron aralioides HOM05D004575 ORTHO05D005774 1.7e-58 229.6 132 84.1
COL.COLO4_18777 Corchorus olitorius HOM05D000537 ORTHO05D005774 2.9e-58 228.8 132 84.1
SGA_v2.0_scaffold45G17045 Striga asiatica HOM05D004575 ORTHO05D005774 4.9e-58 228.0 133 82.7
BraA02t05876Z Brassica rapa HOM05D004575 ORTHO05D005774 6.3e-58 227.6 133 83.5
MBI14_g37099_MAGBIO Magnolia biondii HOM05D004575 ORTHO05D003073 6.3e-58 227.6 132 84.1
BraA03t10558Z Brassica rapa HOM05D004575 ORTHO05D005774 8.3e-58 227.3 133 83.5
A02p08040 Brassica napus HOM05D004575 ORTHO05D005774 1.4e-57 226.5 132 83.3
C02p13680 Brassica napus HOM05D004575 ORTHO05D005774 1.4e-57 226.5 132 83.3
BcaB01g04472 Brassica carinata HOM05D004575 ORTHO05D005774 1.8e-57 226.1 132 83.3
A03p12440 Brassica napus HOM05D004575 ORTHO05D005774 1.8e-57 226.1 132 83.3
C03p14640 Brassica napus HOM05D004575 ORTHO05D005774 1.8e-57 226.1 132 83.3
Sabra18G0093000 Salix brachista HOM05D004575 ORTHO05D005774 4.6e-56 221.5 165 69.1
EL10Ac4g09955 Beta vulgaris HOM05D004575 ORTHO05D005774 1.3e-55 219.9 142 78.9
Sabra06G0142200 Salix brachista HOM05D004575 ORTHO05D005774 1.5e-54 216.5 163 69.3
HanXRQChr01g0001761 Helianthus annuus HOM05D004575 ORTHO05D005774 3.3e-54 215.3 142 75.4
THA.LOC104817825 Tarenaya hassleriana HOM05D004575 ORTHO05D005774 1.2e-51 206.8 173 64.2
MBI10_g16410_MAGBIO Magnolia biondii HOM05D004575 ORTHO05D005774 2.2e-50 202.6 181 60.8
MBI19_g38854_MAGBIO Magnolia biondii HOM05D004575 ORTHO05D005774 5.0e-47 191.4 121 80.2
MBI15_g16628_MAGBIO Magnolia biondii HOM05D004575 ORTHO05D005774 1.1e-46 190.3 123 78.0
arahy.Tifrunner.gnm1.ann1.C8YHGX Arachis hypogaea HOM05D004575 ORTHO05D005774 1.4e-44 183.3 147 66.7
FAN19G2168 Fragaria x ananassa HOM05D004575 ORTHO05D005774 6.8e-44 181.0 142 67.6
PSO017G5222 Papaver somniferum HOM05D004575 ORTHO05D005774 5.8e-43 177.9 142 66.9
PGR142G2168 Punica granatum HOM05D004575 ORTHO05D005774 9.8e-43 177.2 140 66.4
Hund04571 Selenicereus undatus HOM05D004575 ORTHO05D005774 2.9e-42 175.6 142 65.5
MCO07G641 Micromonas commoda HOM05D004575 ORTHO05D005774 1.9e-41 172.9 140 59.3
FAN26G2236 Fragaria x ananassa HOM05D004575 ORTHO05D005774 3.2e-41 172.2 133 68.4
FAN28G0045 Fragaria x ananassa HOM05D004575 ORTHO05D005774 3.2e-41 172.2 133 68.4
Sc10g0009430 Simmondsia chinensis HOM05D004575 ORTHO05D005774 1.6e-40 169.9 96 83.3
FAN23G2865 Fragaria x ananassa HOM05D004575 ORTHO05D005774 2.1e-40 169.5 133 67.7
Actinidia04286 Actinidia chinensis HOM05D004575 ORTHO05D005774 4.7e-37 158.3 93 84.9
BcaB08g36156 Brassica carinata HOM05D004575 ORTHO05D005774 7.6e-35 151.0 131 64.1
Actinidia38338 Actinidia chinensis HOM05D004575 ORTHO05D005774 1.7e-34 149.8 83 86.7
PRCOL_00004142 Prasinoderma coloniale HOM05D004575 ORTHO05D005774 1.7e-34 149.8 142 52.1
Cre03.g146467 Chlamydomonas reinhardtii HOM05D004575 ORTHO05D005774 1.4e-33 146.7 140 50.7
MBI15_g43789_MAGBIO Magnolia biondii HOM05D004575 ORTHO05D005774 1.4e-33 146.7 123 65.0
Rhsim04G0120400 Rhododendron simsii HOM05D004575 ORTHO05D005774 1.0e-31 140.6 117 63.2
MBI04_g06937_MAGBIO Magnolia biondii HOM05D004575 ORTHO05D005774 1.5e-30 136.7 75 86.7
MBI18_g29808_MAGBIO Magnolia biondii HOM05D004575 ORTHO05D005774 4.3e-30 135.2 75 85.3
TPR.G29813 Trifolium pratense HOM05D004575 ORTHO05D005774 5.6e-30 134.8 76 84.2
MBI19_g16412_MAGBIO Magnolia biondii HOM05D004575 ORTHO05D005774 2.2e-26 122.9 79 78.5
Peaxi162Scf00827g00622 Petunia axillaris HOM05D004575 ORTHO05D005774 2.7e-16 89.4 58 74.1
AagrBONN_evm.TU.Sc2ySwM_368.1888 Anthoceros agrestis HOM05D004575 ORTHO05D004251 1.9e-14 83.2 52 71.2
A10p16140 Brassica napus HOM05D004575 ORTHO05D005774 2.5e-14 82.8 108 45.4
BolC3t13444H Brassica oleracea HOM05D004575 ORTHO05D010533 4.3e-14 82.0 42 92.9
Lj7A455G28 Lonicera japonica HOM05D004575 ORTHO05D005774 3.6e-13 79.0 104 47.1
A01p23900 Brassica napus HOM05D001825 ORTHO05D010533 6.7e-07 58.2 39 74.4


User provided reference genes

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