Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c19_5160 Physcomitrium patens HOM05D004126 ORTHO05D004818 1.1e-30 136.0 67 100.0
AagrBONN_evm.TU.Sc2ySwM_228.2832 Anthoceros agrestis HOM05D004126 ORTHO05D004818 5.3e-09 63.9 61 54.1
Actinidia35453 Actinidia chinensis HOM05D004126 ORTHO05D004818 1.5e-08 62.4 61 52.5
CiPaw.14G102800 Carya illinoinensis HOM05D004126 ORTHO05D004818 2.6e-08 61.6 61 52.5
HanXRQChr01g0019701 Helianthus annuus HOM05D004126 ORTHO05D004818 3.4e-08 61.2 61 50.8
Nitab4.5_0009196g0030 Nicotiana tabacum HOM05D004126 ORTHO05D004818 3.4e-08 61.2 61 54.1
DCAR_012178 Daucus carota HOM05D004126 ORTHO05D004818 4.5e-08 60.8 61 50.8
FvH4_3g29830 Fragaria vesca HOM05D004126 ORTHO05D004818 4.5e-08 60.8 61 50.8
Hma1.2p1_0695F.1_g204510 Hydrangea macrophylla HOM05D004126 ORTHO05D004818 4.5e-08 60.8 61 49.2
Medtr4g101930 Medicago truncatula HOM05D004126 ORTHO05D004818 4.5e-08 60.8 61 50.8
Peaxi162Scf00114g00210 Petunia axillaris HOM05D004126 ORTHO05D004818 4.5e-08 60.8 61 52.5
Actinidia07223 Actinidia chinensis HOM05D004126 ORTHO05D004818 5.8e-08 60.5 61 50.8
CANSAT54G1468 Cannabis sativa HOM05D004126 ORTHO05D004818 5.8e-08 60.5 61 52.5
HanXRQChr04g0094651 Helianthus annuus HOM05D004126 ORTHO05D004818 7.6e-08 60.1 61 50.8
TPR.G28100 Trifolium pratense HOM05D004126 ORTHO05D004818 7.6e-08 60.1 61 50.8
TWI12G1250 Tripterygium wilfordii HOM05D004126 ORTHO05D004818 7.6e-08 60.1 56 55.4
CSS0047176 Camellia sinensis var. sinensis HOM05D004126 ORTHO05D004818 1.0e-07 59.7 61 50.8
Lsat_1_v5_gn_6_39460 Lactuca sativa HOM05D004126 ORTHO05D004818 1.0e-07 59.7 59 50.8
MBI14_g32122_MAGBIO Magnolia biondii HOM05D004126 ORTHO05D010914 1.0e-07 59.7 61 52.5
Nitab4.5_0003082g0050 Nicotiana tabacum HOM05D004126 ORTHO05D004818 1.0e-07 59.7 61 52.5
TPR.G37632 Trifolium pratense HOM05D004126 ORTHO05D004818 1.0e-07 59.7 61 50.8
Gohir.D08G014300 Gossypium hirsutum HOM05D004126 ORTHO05D004818 1.3e-07 59.3 55 54.5
Gorai.004G008700 Gossypium raimondii HOM05D004126 ORTHO05D004818 1.3e-07 59.3 55 54.5
Lj3g0005404 Lotus japonicus HOM05D004126 ORTHO05D004818 1.3e-07 59.3 61 50.8
Potri.011G156400 Populus trichocarpa HOM05D004126 ORTHO05D004818 1.3e-07 59.3 61 50.8
arahy.Tifrunner.gnm1.ann1.M99YM4 Arachis hypogaea HOM05D004126 ORTHO05D004818 1.7e-07 58.9 61 50.8
arahy.Tifrunner.gnm1.ann1.S740RW Arachis hypogaea HOM05D004126 ORTHO05D004818 1.7e-07 58.9 61 50.8
MSTRG.12360 Avicennia marina HOM05D004126 ORTHO05D004818 1.7e-07 58.9 61 47.5
CSS0041849 Camellia sinensis var. sinensis HOM05D004126 ORTHO05D004818 1.7e-07 58.9 61 49.2
CDE02G2464 Ceratophyllum demersum HOM05D004126 ORTHO05D004818 1.7e-07 58.9 61 49.2
CDE04G1551 Ceratophyllum demersum HOM05D004126 ORTHO05D004818 1.7e-07 58.9 61 49.2
ECA248G1359 Erigeron canadensis HOM05D004126 ORTHO05D004818 1.7e-07 58.9 61 49.2
Lsat_1_v5_gn_2_95660 Lactuca sativa HOM05D004126 ORTHO05D004818 1.7e-07 58.9 61 47.5
Lalb_Chr19g0136701 Lupinus albus HOM05D004126 ORTHO05D004818 1.7e-07 58.9 61 49.2
Nn2g11232 Nelumbo nucifera HOM05D004126 ORTHO05D004818 1.7e-07 58.9 61 50.8
arahy.Tifrunner.gnm1.ann1.A0MYZQ Arachis hypogaea HOM05D004126 ORTHO05D004818 2.2e-07 58.5 61 50.8
arahy.Tifrunner.gnm1.ann1.IBK94M Arachis hypogaea HOM05D004126 ORTHO05D004818 2.2e-07 58.5 61 50.8
Cc01_g09610 Coffea canephora HOM05D004126 ORTHO05D004818 2.2e-07 58.5 61 50.8
Dinv29439 Davidia involucrata HOM05D004126 ORTHO05D004818 2.2e-07 58.5 61 49.2
FAN16G2018 Fragaria x ananassa HOM05D004126 ORTHO05D004818 2.2e-07 58.5 56 51.8
FAN21G0712 Fragaria x ananassa HOM05D004126 ORTHO05D004818 2.2e-07 58.5 56 51.8
FAN25G0231 Fragaria x ananassa HOM05D004126 ORTHO05D004818 2.2e-07 58.5 56 51.8
Gohir.A08G004000 Gossypium hirsutum HOM05D004126 ORTHO05D004818 2.2e-07 58.5 55 52.7
Gohir.A08G004100 Gossypium hirsutum HOM05D004126 ORTHO05D004818 2.2e-07 58.5 55 52.7
Lsat_1_v5_gn_1_62101 Lactuca sativa HOM05D004126 ORTHO05D004818 2.2e-07 58.5 61 47.5
Oeu050197.1 Olea europaea HOM05D004126 ORTHO05D004818 2.2e-07 58.5 61 50.8
Os07g0647500 Oryza sativa ssp. japonica HOM05D004126 ORTHO05D004818 2.2e-07 58.5 61 52.5
Peaxi162Scf01284g00022 Petunia axillaris HOM05D004126 ORTHO05D004818 2.2e-07 58.5 61 50.8
PGR119G0779 Punica granatum HOM05D004126 ORTHO05D004818 2.2e-07 58.5 61 50.8
SalBow3G0427 Salvia bowleyana HOM05D004126 ORTHO05D004818 2.2e-07 58.5 60 48.3
GSVIVG01031376001 Vitis vinifera HOM05D004126 ORTHO05D004818 2.2e-07 58.5 61 50.8
arahy.Tifrunner.gnm1.ann1.A24RK9 Arachis hypogaea HOM05D004126 ORTHO05D004818 2.9e-07 58.2 59 52.5
CAN.G919.11 Capsicum annuum HOM05D004126 ORTHO05D004818 2.9e-07 58.2 61 49.2
AUR62003964 Chenopodium quinoa HOM05D004126 ORTHO05D004818 2.9e-07 58.2 61 45.9
Gohir.A05G083000 Gossypium hirsutum HOM05D004126 ORTHO05D004818 2.9e-07 58.2 61 49.2
Gohir.D05G086000 Gossypium hirsutum HOM05D004126 ORTHO05D004818 2.9e-07 58.2 61 49.2
Gorai.009G087600 Gossypium raimondii HOM05D004126 ORTHO05D004818 2.9e-07 58.2 61 49.2
MD03G1165300 Malus domestica HOM05D004126 ORTHO05D004818 2.9e-07 58.2 56 53.6
MD11G1159300 Malus domestica HOM05D004126 ORTHO05D004818 2.9e-07 58.2 56 53.6
Medtr4g053330 Medicago truncatula HOM05D004126 ORTHO05D004818 2.9e-07 58.2 61 49.2
Sopen11g026730 Solanum pennellii HOM05D004126 ORTHO05D004818 2.9e-07 58.2 61 52.5
Ca_01671_v3 Cicer arietinum L. HOM05D004126 ORTHO05D004818 3.8e-07 57.8 61 47.5
ECA238G2243 Erigeron canadensis HOM05D004126 ORTHO05D004818 3.8e-07 57.8 61 49.2
Glyma.11G187900 Glycine max HOM05D004126 ORTHO05D004818 3.8e-07 57.8 56 53.6
Glyma.12G086600 Glycine max HOM05D004126 ORTHO05D004818 3.8e-07 57.8 56 53.6
Gohir.D08G014400 Gossypium hirsutum HOM05D004126 ORTHO05D004818 3.8e-07 57.8 55 52.7
Gorai.004G008800 Gossypium raimondii HOM05D004126 ORTHO05D004818 3.8e-07 57.8 55 52.7
Lj3g0019761 Lotus japonicus HOM05D004126 ORTHO05D004818 3.8e-07 57.8 61 49.2
Manes.04G007100 Manihot esculenta HOM05D004126 ORTHO05D004818 3.8e-07 57.8 61 47.5
Sc10g0010310 Simmondsia chinensis HOM05D004126 ORTHO05D004818 3.8e-07 57.8 61 47.5
CAN.G644.16 Capsicum annuum HOM05D004126 ORTHO05D004818 4.9e-07 57.4 61 50.8
Glyma.12G182500 Glycine max HOM05D004126 ORTHO05D004818 4.9e-07 57.4 61 49.2
Oeu035542.1 Olea europaea HOM05D004126 ORTHO05D004818 4.9e-07 57.4 56 51.8
Prupe.6G122400 Prunus persica HOM05D004126 ORTHO05D004818 4.9e-07 57.4 61 50.8
RcHm_v2.0_Chr5g0055141 Rosa chinensis HOM05D004126 ORTHO05D004818 4.9e-07 57.4 61 49.2
PGSC0003DMG400007147 Solanum tuberosum HOM05D004126 ORTHO05D004818 4.9e-07 57.4 61 49.2
PGSC0003DMG400026528 Solanum tuberosum HOM05D004126 ORTHO05D004818 4.9e-07 57.4 61 52.5
Thecc.09G289400 Theobroma cacao HOM05D004126 ORTHO05D004818 4.9e-07 57.4 61 47.5
AUR62025834 Chenopodium quinoa HOM05D004126 ORTHO05D004818 6.5e-07 57.0 61 44.3
AUR62029880 Chenopodium quinoa HOM05D004126 ORTHO05D004818 6.5e-07 57.0 61 44.3
Lalb_Chr03g0027971 Lupinus albus HOM05D004126 ORTHO05D004818 6.5e-07 57.0 61 49.2
Nn2g13476 Nelumbo nucifera HOM05D004126 ORTHO05D004818 6.5e-07 57.0 61 47.5
Sopen06g030950 Solanum pennellii HOM05D004126 ORTHO05D004818 6.5e-07 57.0 61 49.2
Ciclev10029753m.g Citrus clementina HOM05D004126 ORTHO05D004818 8.4e-07 56.6 61 47.5
Migut.N02508 Erythranthe guttata HOM05D004126 ORTHO05D004818 8.4e-07 56.6 56 51.8
Atru.chr3.3354 Acer truncatum HOM05D004126 ORTHO05D004818 1.1e-06 56.2 61 49.2
MELO3C021443.2 Cucumis melo HOM05D004126 ORTHO05D004818 1.1e-06 56.2 61 47.5
Lalb_Chr24g0395191 Lupinus albus HOM05D004126 ORTHO05D004818 1.1e-06 56.2 61 49.2
Medtr2g085045 Medicago truncatula HOM05D004126 ORTHO05D004818 1.1e-06 56.2 61 49.2
Nitab4.5_0004070g0040 Nicotiana tabacum HOM05D004126 ORTHO05D004818 1.1e-06 56.2 61 50.8
Manes.11G159200 Manihot esculenta HOM05D004126 ORTHO05D004818 1.4e-06 55.8 61 47.5
Mapoly0085s0067 Marchantia polymorpha HOM05D004126 ORTHO05D004818 1.4e-06 55.8 58 50.0
Phvul.005G126200 Phaseolus vulgaris HOM05D004126 ORTHO05D004818 1.4e-06 55.8 61 47.5
Phvul.011G091700 Phaseolus vulgaris HOM05D004126 ORTHO05D004818 1.4e-06 55.8 61 45.9
Psat4g069800 Pisum sativum HOM05D004126 ORTHO05D004818 1.4e-06 55.8 61 47.5
TPR.G23418 Trifolium pratense HOM05D004126 ORTHO05D004818 1.4e-06 55.8 61 47.5
ClCG02G021980 Citrullus lanatus HOM05D004126 ORTHO05D004818 1.9e-06 55.5 61 45.9
QL01p013387 Quercus lobata HOM05D004126 ORTHO05D004818 1.9e-06 55.5 60 45.0
TAR636G2319 Trochodendron aralioides HOM05D004126 ORTHO05D004818 1.9e-06 55.5 56 53.6
Eucgr.B03883 Eucalyptus grandis HOM05D004126 ORTHO05D004818 2.5e-06 55.1 60 50.0
Psat5g255840 Pisum sativum HOM05D004126 ORTHO05D004818 2.5e-06 55.1 59 47.5
Rhsim10G0039800 Rhododendron simsii HOM05D004126 ORTHO05D004818 2.5e-06 55.1 61 45.9
ECA233G1451 Erigeron canadensis HOM05D004126 ORTHO05D004818 3.2e-06 54.7 59 47.5
Eucgr.J00455 Eucalyptus grandis HOM05D004126 ORTHO05D004818 3.2e-06 54.7 61 45.9
Os02g0162000 Oryza sativa ssp. japonica HOM05D004126 ORTHO05D004818 3.2e-06 54.7 61 47.5
ClCG02G021990 Citrullus lanatus HOM05D004126 ORTHO05D004818 4.2e-06 54.3 61 44.3
DCAR_010375 Daucus carota HOM05D004126 ORTHO05D004818 4.2e-06 54.3 52 50.0
Sed0026235 Sechium edule HOM05D004126 ORTHO05D004818 4.2e-06 54.3 61 45.9
Zm00001eb110520 Zea mays HOM05D004126 ORTHO05D004818 4.2e-06 54.3 55 54.5
Zm00001eb329410 Zea mays HOM05D004126 ORTHO05D004818 4.2e-06 54.3 61 49.2
ATR1136G081 Amborella trichopoda HOM05D004126 ORTHO05D004818 5.5e-06 53.9 61 49.2
CsaV3_6G014810 Cucumis sativus L. HOM05D004126 ORTHO05D004818 5.5e-06 53.9 61 44.3
Duzib170G0121 Durio zibethinus HOM05D004126 ORTHO05D004818 5.5e-06 53.9 55 49.1
Migut.D02341 Erythranthe guttata HOM05D004126 ORTHO05D004818 5.5e-06 53.9 61 45.9
Nn2g13477 Nelumbo nucifera HOM05D004126 ORTHO05D004818 5.5e-06 53.9 55 49.1
THA.LOC109117263 Tarenaya hassleriana HOM05D004126 ORTHO05D004818 5.5e-06 53.9 61 47.5
Ah.07g202810 Amaranthus hybridus HOM05D004126 ORTHO05D004818 7.1e-06 53.5 61 42.6
Glyma.13G318450 Glycine max HOM05D004126 ORTHO05D004818 7.1e-06 53.5 61 45.9
MD03G1137200 Malus domestica HOM05D004126 ORTHO05D004818 7.1e-06 53.5 51 49.0
Potri.001G460200 Populus trichocarpa HOM05D004126 ORTHO05D004818 7.1e-06 53.5 61 44.3
vmacro14365 Vaccinium macrocarpon HOM05D004126 ORTHO05D004818 7.1e-06 53.5 61 45.9
Sabra16G0311900 Salix brachista HOM05D004126 ORTHO05D004818 9.3e-06 53.1 55 47.3
Sed0008155 Sechium edule HOM05D004126 ORTHO05D004818 9.3e-06 53.1 61 44.3
THA.LOC104800546 Tarenaya hassleriana HOM05D004126 ORTHO05D004818 9.3e-06 53.1 61 45.9


User provided reference genes

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