Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c19_18310 Physcomitrium patens HOM05D005520 ORTHO05D006633 2.0e-109 399.1 197 100.0
SMO172G0176 Selaginella moellendorffii HOM05D005520 ORTHO05D006633 6.9e-49 198.0 113 71.7
Pp3c2_36820 Physcomitrium patens HOM05D005520 ORTHO05D006633 3.2e-46 189.1 117 70.1
CBR_g2851 Chara braunii HOM05D005520 ORTHO05D006633 1.6e-45 186.8 131 59.5
Mapoly0036s0053 Marchantia polymorpha HOM05D005520 ORTHO05D006633 2.3e-44 183.0 126 61.9
A08p03510 Brassica napus HOM05D005520 ORTHO05D006633 7.4e-43 177.9 139 59.0
C03p89340 Brassica napus HOM05D005520 ORTHO05D006633 2.1e-42 176.4 121 62.8
BolC3t21249H Brassica oleracea HOM05D005520 ORTHO05D006633 2.1e-42 176.4 121 62.8
Solyc11g071960.2 Solanum lycopersicum HOM05D005520 ORTHO05D006633 2.8e-42 176.0 122 62.3
BraA08t32384Z Brassica rapa HOM05D005520 ORTHO05D006633 4.8e-42 175.3 191 48.2
CAN.G689.10 Capsicum annuum HOM05D005520 ORTHO05D006633 4.8e-42 175.3 131 60.3
THA.LOC104825832 Tarenaya hassleriana HOM05D005520 ORTHO05D006633 4.8e-42 175.3 124 62.1
PGSC0003DMG400002983 Solanum tuberosum HOM05D005520 ORTHO05D006633 8.2e-42 174.5 122 61.5
CARHR039940 Cardamine hirsuta HOM05D005520 ORTHO05D006633 1.4e-41 173.7 139 55.4
PSO675G3202 Papaver somniferum HOM05D005520 ORTHO05D006633 1.4e-41 173.7 142 57.7
Sopen11g029630 Solanum pennellii HOM05D005520 ORTHO05D006633 1.4e-41 173.7 122 61.5
PSO541G2579 Papaver somniferum HOM05D005520 ORTHO05D006633 2.4e-41 172.9 142 57.7
Sp1g36760 Schrenkiella parvula HOM05D005520 ORTHO05D006633 2.4e-41 172.9 121 62.0
SEGI_34662 Sequoiadendron giganteum HOM05D005520 ORTHO05D006633 4.0e-41 172.2 114 62.3
Sc18g0003610 Simmondsia chinensis HOM05D005520 ORTHO05D006633 5.3e-41 171.8 111 65.8
Carub.0001s3909 Capsella rubella HOM05D005520 ORTHO05D006633 6.9e-41 171.4 139 55.4
AL1G57420 Arabidopsis lyrata HOM05D005520 ORTHO05D006633 9.0e-41 171.0 151 53.0
EL10Ac8g19365 Beta vulgaris HOM05D005520 ORTHO05D006633 9.0e-41 171.0 122 62.3
HanXRQChr03g0069991 Helianthus annuus HOM05D005520 ORTHO05D006633 9.0e-41 171.0 114 63.2
Thhalv10011740m.g Eutrema salsugineum HOM05D005520 ORTHO05D006633 1.2e-40 170.6 188 47.3
unitig_37.g12800 Utricularia gibba HOM05D005520 ORTHO05D006633 1.5e-40 170.2 121 61.2
Peaxi162Scf00429g00622 Petunia axillaris HOM05D005520 ORTHO05D006633 2.0e-40 169.9 118 61.0
CiPaw.06G167100 Carya illinoinensis HOM05D005520 ORTHO05D006633 2.6e-40 169.5 118 63.6
CBR_g31027 Chara braunii HOM05D005520 ORTHO05D006633 2.6e-40 169.5 163 47.9
Ciclev10029310m.g Citrus clementina HOM05D005520 ORTHO05D006633 4.5e-40 168.7 118 62.7
GSVIVG01037859001 Vitis vinifera HOM05D005520 ORTHO05D006633 4.5e-40 168.7 115 63.5
Lsat_1_v5_gn_9_112480 Lactuca sativa HOM05D005520 ORTHO05D006633 5.8e-40 168.3 118 61.0
Medtr8g045480 Medicago truncatula HOM05D005520 ORTHO05D006633 5.8e-40 168.3 146 52.7
ECA240G0181 Erigeron canadensis HOM05D005520 ORTHO05D006633 7.6e-40 167.9 114 62.3
SGA_v2.0_scaffold225G43026 Striga asiatica HOM05D005520 ORTHO05D006633 7.6e-40 167.9 136 56.6
MSTRG.16689 Avicennia marina HOM05D005520 ORTHO05D006633 1.0e-39 167.5 123 60.2
Eucgr.G01264 Eucalyptus grandis HOM05D005520 ORTHO05D006633 1.0e-39 167.5 118 61.9
Manes.10G081300 Manihot esculenta HOM05D005520 ORTHO05D006633 1.0e-39 167.5 119 62.2
Cpa.g.sc106.74 Carica papaya HOM05D005520 ORTHO05D006633 1.7e-39 166.8 134 56.0
MD10G1103100 Malus domestica HOM05D005520 ORTHO05D006633 1.7e-39 166.8 111 64.9
Medtr1g050465 Medicago truncatula HOM05D005520 ORTHO05D006633 1.7e-39 166.8 146 52.1
Nitab4.5_0000158g0130 Nicotiana tabacum HOM05D005520 ORTHO05D006633 1.7e-39 166.8 116 59.5
PGR042G2710 Punica granatum HOM05D005520 ORTHO05D006633 1.7e-39 166.8 111 64.9
Cfa004647 Carpinus fangiana HOM05D005520 ORTHO05D006633 2.2e-39 166.4 111 64.9
Duzib052G0352 Durio zibethinus HOM05D005520 ORTHO05D006633 2.2e-39 166.4 120 59.2
Prupe.8G141400 Prunus persica HOM05D005520 ORTHO05D006633 2.2e-39 166.4 118 61.0
Actinidia34369 Actinidia chinensis HOM05D005520 ORTHO05D006633 2.9e-39 166.0 111 64.9
TPR.G18583 Trifolium pratense HOM05D005520 ORTHO05D006633 2.9e-39 166.0 123 57.7
Dinv15795 Davidia involucrata HOM05D005520 ORTHO05D006633 3.8e-39 165.6 111 65.8
Dinv42222 Davidia involucrata HOM05D005520 ORTHO05D006633 3.8e-39 165.6 115 61.7
Lj5A217G90 Lonicera japonica HOM05D005520 ORTHO05D006633 3.8e-39 165.6 111 64.9
Potri.009G090200 Populus trichocarpa HOM05D005520 ORTHO05D006633 3.8e-39 165.6 111 64.9
MD05G1097000 Malus domestica HOM05D005520 ORTHO05D006633 5.0e-39 165.2 111 64.0
TPR.G14598 Trifolium pratense HOM05D005520 ORTHO05D006633 5.0e-39 165.2 123 56.9
Rhsim05G0090000 Rhododendron simsii HOM05D005520 ORTHO05D006633 6.5e-39 164.9 111 64.9
Gohir.D13G044800 Gossypium hirsutum HOM05D005520 ORTHO05D006633 8.4e-39 164.5 111 63.1
Gorai.013G049600 Gossypium raimondii HOM05D005520 ORTHO05D006633 8.4e-39 164.5 111 63.1
Lj3g0017538 Lotus japonicus HOM05D005520 ORTHO05D006633 8.4e-39 164.5 111 63.1
Sabra09G0069800 Salix brachista HOM05D005520 ORTHO05D006633 1.1e-38 164.1 111 64.0
TWI14G1052 Tripterygium wilfordii HOM05D005520 ORTHO05D006633 1.1e-38 164.1 118 60.2
CSS0014981 Camellia sinensis var. sinensis HOM05D005520 ORTHO05D006633 1.4e-38 163.7 111 64.0
TAR625G0105 Trochodendron aralioides HOM05D000641 ORTHO05D006633 1.9e-38 163.3 131 57.3
CANSAT25G2379 Cannabis sativa HOM05D005520 ORTHO05D006633 2.5e-38 162.9 118 60.2
Haze_10245 Corylus avellana HOM05D005520 ORTHO05D006633 2.5e-38 162.9 111 63.1
Rhsim11G0154200 Rhododendron simsii HOM05D005520 ORTHO05D006633 2.5e-38 162.9 122 59.0
ClCG10G010520 Citrullus lanatus HOM05D005520 ORTHO05D006633 3.2e-38 162.5 136 54.4
SalBow6G1186 Salvia bowleyana HOM05D005520 ORTHO05D006633 3.2e-38 162.5 114 61.4
SalBow6G6323 Salvia bowleyana HOM05D005520 ORTHO05D006633 3.2e-38 162.5 114 61.4
DCAR_021961 Daucus carota HOM05D005520 ORTHO05D006633 4.2e-38 162.2 125 56.8
Aa31LG10G4210 Aethionema arabicum HOM05D001821 ORTHO05D006633 7.1e-38 161.4 167 48.5
Migut.B00427 Erythranthe guttata HOM05D005520 ORTHO05D006633 7.1e-38 161.4 110 62.7
Gohir.A04G118800 Gossypium hirsutum HOM05D005520 ORTHO05D006633 7.1e-38 161.4 111 63.1
arahy.Tifrunner.gnm1.ann1.ZQ2RMB Arachis hypogaea HOM05D005520 ORTHO05D006633 9.3e-38 161.0 136 52.9
Gohir.D04G160500 Gossypium hirsutum HOM05D005520 ORTHO05D006633 9.3e-38 161.0 111 63.1
Gorai.012G148200 Gossypium raimondii HOM05D005520 ORTHO05D006633 9.3e-38 161.0 111 63.1
RcHm_v2.0_Chr6g0253041 Rosa chinensis HOM05D005520 ORTHO05D006633 9.3e-38 161.0 114 61.4
Migut.F01600 Erythranthe guttata HOM05D005520 ORTHO05D006633 1.6e-37 160.2 178 46.1
RcHm_v2.0_Chr6g0253051 Rosa chinensis HOM05D005520 ORTHO05D006633 1.6e-37 160.2 114 61.4
Zm00001eb007440 Zea mays HOM05D005520 ORTHO05D006633 1.6e-37 160.2 118 59.3
Psat4g180760 Pisum sativum HOM05D005520 ORTHO05D006633 2.1e-37 159.8 152 48.7
Lj4g0000264 Lotus japonicus HOM05D005520 ORTHO05D006633 3.5e-37 159.1 111 60.4
Nitab4.5_0008364g0030 Nicotiana tabacum HOM05D005520 ORTHO05D006633 6.1e-37 158.3 126 55.6
HPP92_023672 Vanilla planifolia HOM05D005520 ORTHO05D006633 7.9e-37 157.9 142 52.1
HPP92_023689 Vanilla planifolia HOM05D005520 ORTHO05D006633 7.9e-37 157.9 142 52.1
Sed0007262 Sechium edule HOM05D005520 ORTHO05D006633 1.3e-36 157.1 111 59.5
VMungo0251G2197 Vigna mungo HOM05D005520 ORTHO05D006633 1.8e-36 156.8 138 52.2
Phvul.003G276100 Phaseolus vulgaris HOM05D005520 ORTHO05D006633 2.3e-36 156.4 136 52.2
CDE07G0521 Ceratophyllum demersum HOM05D005520 ORTHO05D006633 8.7e-36 154.5 111 58.6
COL.COLO4_32538 Corchorus olitorius HOM05D005520 ORTHO05D006633 1.1e-35 154.1 136 52.9
Lalb_Chr24g0402091 Lupinus albus HOM05D005520 ORTHO05D006633 1.5e-35 153.7 103 60.2
arahy.Tifrunner.gnm1.ann1.DF92AY Arachis hypogaea HOM05D005520 ORTHO05D006633 4.3e-35 152.1 151 47.7
CDE04G3180 Ceratophyllum demersum HOM05D005520 ORTHO05D006633 4.3e-35 152.1 119 53.8
Migut.B00429 Erythranthe guttata HOM05D005520 ORTHO05D009373 8.2e-34 147.9 99 63.6
FAN20G2059 Fragaria x ananassa HOM05D005520 ORTHO05D006633 1.8e-33 146.7 157 47.1
Cc02_g19680 Coffea canephora HOM05D005520 ORTHO05D006633 4.1e-33 145.6 175 42.3
BcaB04g17288 Brassica carinata HOM05D005520 ORTHO05D006633 2.9e-31 139.4 198 42.9
Psat7g087120 Pisum sativum HOM05D005520 ORTHO05D006633 2.9e-31 139.4 96 62.5
AT1G49880 Arabidopsis thaliana HOM05D005520 ORTHO05D006633 6.5e-31 138.3 164 44.5
QL11p031741 Quercus lobata HOM05D005520 ORTHO05D006633 5.5e-30 135.2 180 40.0
Cre03.g173200 Chlamydomonas reinhardtii HOM05D005520 ORTHO05D006633 3.6e-29 132.5 102 52.9
RcHm_v2.0_Chr6g0253221 Rosa chinensis HOM05D005520 ORTHO05D006633 3.6e-29 132.5 114 56.1
Psat6g139520 Pisum sativum HOM05D005520 ORTHO05D006633 6.1e-29 131.7 101 56.4
RhsimUnG0125400 Rhododendron simsii HOM05D005520 ORTHO05D006633 1.8e-28 130.2 125 50.4
CBR_g38847 Chara braunii HOM05D005520 ORTHO05D006633 2.3e-28 129.8 106 49.1
Haze_26784 Corylus avellana HOM05D005520 ORTHO05D006633 2.3e-28 129.8 148 41.9
vmacro01971 Vaccinium macrocarpon HOM05D005520 ORTHO05D006633 8.8e-28 127.9 120 50.8
FAN15G3606 Fragaria x ananassa HOM05D005520 ORTHO05D006633 5.7e-27 125.2 137 47.4
PRCOL_00001319 Prasinoderma coloniale HOM05D000442 ORTHO05D001718 9.7e-27 124.4 106 50.0
Glyma.13G199600 Glycine max HOM05D005520 ORTHO05D006633 1.7e-26 123.6 122 45.9
Atru.chr5.2403 Acer truncatum HOM05D005520 ORTHO05D006633 2.4e-25 119.8 87 57.5
MCO01G292 Micromonas commoda HOM05D005520 ORTHO05D006633 4.1e-25 119.0 96 49.0
FAN24G1644 Fragaria x ananassa HOM05D005520 ORTHO05D006633 1.2e-24 117.5 146 44.5
Cre14.g633000 Chlamydomonas reinhardtii HOM05D005520 ORTHO05D006633 2.5e-22 109.8 105 42.9
Thecc.02G114500 Theobroma cacao HOM05D005520 ORTHO05D006633 4.2e-22 109.0 72 65.3
Oeu009678.2 Olea europaea HOM05D005520 ORTHO05D006633 9.4e-22 107.8 158 38.6
Aqoxy6G02716 Aquilegia oxysepala HOM05D005520 ORTHO05D006633 2.7e-21 106.3 60 78.3
FvH4_2g03990 Fragaria vesca HOM05D005520 ORTHO05D006633 3.6e-21 105.9 84 60.7
Actinidia27983 Actinidia chinensis HOM05D005520 ORTHO05D006633 7.9e-21 104.8 103 46.6
AUR62022505 Chenopodium quinoa HOM05D005520 ORTHO05D006633 1.0e-20 104.4 95 52.6
Nn1g07564 Nelumbo nucifera HOM05D005520 ORTHO05D006633 1.5e-19 100.5 60 70.0
Cfa024926 Carpinus fangiana HOM05D000137 ORTHO05D122446 2.0e-19 100.1 92 44.6
Ca_24141_v3 Cicer arietinum L. HOM05D005520 ORTHO05D006633 2.0e-19 100.1 93 51.6
Medtr0857s0010 Medicago truncatula HOM05D005520 ORTHO05D006633 1.8e-17 93.6 63 58.7
MCO01G319 Micromonas commoda HOM05D005520 ORTHO05D006633 7.0e-17 91.7 101 41.6
Potri.001G296000 Populus trichocarpa HOM05D005520 ORTHO05D006633 4.5e-16 89.0 119 38.7
Hund12620 Selenicereus undatus HOM05D005520 ORTHO05D006633 6.1e-13 78.6 45 82.2
SHI05087 Sapria himalayana HOM05D005520 ORTHO05D006633 1.1e-11 74.3 79 38.0
CSS0022898 Camellia sinensis var. sinensis HOM05D005520 ORTHO05D006633 5.7e-11 72.0 89 39.3
Glyma.15G237900 Glycine max HOM05D005520 ORTHO05D006633 1.1e-09 67.8 63 55.6
Ciclev10029975m.g Citrus clementina HOM05D005520 ORTHO05D006633 4.1e-09 65.9 54 50.0
Aqoxy6G02727 Aquilegia oxysepala HOM05D005520 ORTHO05D006633 1.6e-08 63.9 52 50.0
MELO3C017991.2 Cucumis melo HOM05D005520 ORTHO05D006633 3.5e-08 62.8 48 64.6
CsaV3_4G000440 Cucumis sativus L. HOM05D005520 ORTHO05D006633 3.5e-08 62.8 48 64.6
ATR0165G041 Amborella trichopoda HOM05D005520 ORTHO05D006633 4.5e-08 62.4 64 54.7
Os03g0206300 Oryza sativa ssp. japonica HOM05D005520 ORTHO05D006633 1.3e-07 60.8 46 54.3
AL1G58430 Arabidopsis lyrata HOM05D005520 ORTHO05D006633 5.5e-06 55.5 120 31.7


User provided reference genes

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