Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c19_17730 Physcomitrium patens HOM05D001204 ORTHO05D001428 7.0e-84 313.9 161 100.0
Pp3c11_11470 Physcomitrium patens HOM05D000489 ORTHO05D000372 5.3e-15 85.1 124 38.7
Pp3c7_20230 Physcomitrium patens HOM05D000489 ORTHO05D000372 1.3e-13 80.5 118 38.1
Pp3c11_8360 Physcomitrium patens HOM05D000489 ORTHO05D000372 9.4e-12 74.3 120 35.8
Pp3c10_4720 Physcomitrium patens HOM05D000489 ORTHO05D000372 2.1e-11 73.2 160 33.1
Migut.B01405 Erythranthe guttata HOM05D001204 ORTHO05D001428 3.0e-10 69.3 110 37.3
THA.LOC104817145 Tarenaya hassleriana HOM05D001204 ORTHO05D001428 5.2e-10 68.6 106 32.1
TPR.G27880 Trifolium pratense HOM05D001204 ORTHO05D001428 1.1e-09 67.4 104 35.6
AL4G43260 Arabidopsis lyrata HOM05D001204 ORTHO05D001428 2.0e-09 66.6 106 34.9
SEGI_19364 Sequoiadendron giganteum HOM05D001204 ORTHO05D001428 2.0e-09 66.6 106 31.1
Carub.0004s2688 Capsella rubella HOM05D001204 ORTHO05D001428 3.3e-09 65.9 114 31.6
Carub.0004s2689 Capsella rubella HOM05D001204 ORTHO05D001428 3.3e-09 65.9 105 35.2
MSTRG.17074 Avicennia marina HOM05D001204 ORTHO05D001428 5.7e-09 65.1 113 32.7
RcHm_v2.0_Chr1g0313181 Rosa chinensis HOM05D001204 ORTHO05D001428 5.7e-09 65.1 93 37.6
AT2G44300 Arabidopsis thaliana HOM05D001204 ORTHO05D001428 2.2e-08 63.2 105 34.3
AT2G44290 Arabidopsis thaliana HOM05D001204 ORTHO05D001428 2.8e-08 62.8 105 32.4
BcaNung06604 Brassica carinata HOM05D001204 ORTHO05D001428 2.8e-08 62.8 111 30.6
A05p04490 Brassica napus HOM05D001204 ORTHO05D001428 2.8e-08 62.8 111 30.6
BolC4t22160H Brassica oleracea HOM05D001204 ORTHO05D001428 2.8e-08 62.8 111 30.6
BraA05t19425Z Brassica rapa HOM05D001204 ORTHO05D001428 2.8e-08 62.8 111 30.6
MELO3C017299.2 Cucumis melo HOM05D001204 ORTHO05D009253 2.8e-08 62.8 133 30.1
CARHR139470 Cardamine hirsuta HOM05D001204 ORTHO05D001428 4.8e-08 62.0 105 33.3
Thhalv10001638m.g Eutrema salsugineum HOM05D001204 ORTHO05D001428 4.8e-08 62.0 111 31.5
Cc02_g26830 Coffea canephora HOM05D001204 ORTHO05D001428 6.3e-08 61.6 109 30.3
CsaV3_1G003760 Cucumis sativus L. HOM05D001204 ORTHO05D009253 6.3e-08 61.6 117 30.8
Pp3c21_12160 Physcomitrium patens HOM05D000489 ORTHO05D001428 6.3e-08 61.6 69 42.0
Sp4g26370 Schrenkiella parvula HOM05D001204 ORTHO05D001428 6.3e-08 61.6 88 36.4
Lj3g0019329 Lotus japonicus HOM05D001204 ORTHO05D001428 8.2e-08 61.2 104 30.8
vmacro22466 Vaccinium macrocarpon HOM05D001204 ORTHO05D001428 8.2e-08 61.2 89 32.6
Aa31LG1G25910 Aethionema arabicum HOM05D001204 ORTHO05D001428 1.1e-07 60.8 106 33.0
AL4G43250 Arabidopsis lyrata HOM05D001204 ORTHO05D001428 1.1e-07 60.8 106 33.0
BcaB02g08808 Brassica carinata HOM05D001204 ORTHO05D001428 1.1e-07 60.8 111 29.7
Cfa010703 Carpinus fangiana HOM05D001204 ORTHO05D001428 1.1e-07 60.8 109 31.2
Pp3c2_6280 Physcomitrium patens HOM05D001204 ORTHO05D000372 1.1e-07 60.8 94 34.0
Thhalv10001634m.g Eutrema salsugineum HOM05D001204 ORTHO05D001428 1.4e-07 60.5 111 31.5
Hma1.2p1_0275F.1_g110730 Hydrangea macrophylla HOM05D005303 ORTHO05D006331 1.4e-07 60.5 113 32.7
Pp3c6_760 Physcomitrium patens HOM05D000489 ORTHO05D000372 1.4e-07 60.5 94 34.0
Prupe.2G001800 Prunus persica HOM05D001204 ORTHO05D001428 1.4e-07 60.5 119 34.5
HPP92_017556 Vanilla planifolia HOM05D001204 ORTHO05D001428 1.4e-07 60.5 110 34.5
Actinidia39825 Actinidia chinensis HOM05D001204 ORTHO05D009253 1.8e-07 60.1 104 30.8
Aqoxy2G00050 Aquilegia oxysepala HOM05D001204 ORTHO05D001428 1.8e-07 60.1 113 30.1
COL.COLO4_16508 Corchorus olitorius HOM05D001204 ORTHO05D001428 1.8e-07 60.1 86 34.9
Gohir.A08G026640 Gossypium hirsutum HOM05D001204 ORTHO05D001428 1.8e-07 60.1 113 33.6
Gohir.D08G037101 Gossypium hirsutum HOM05D001204 ORTHO05D001428 1.8e-07 60.1 113 33.6
Gorai.004G035100 Gossypium raimondii HOM05D001204 ORTHO05D001428 1.8e-07 60.1 113 33.6
Phvul.011G181000 Phaseolus vulgaris HOM05D001204 ORTHO05D001428 1.8e-07 60.1 112 33.9
unitig_699.g19749 Utricularia gibba HOM05D001204 ORTHO05D001428 1.8e-07 60.1 98 34.7
MSTRG.28104 Avicennia marina HOM05D001204 ORTHO05D001428 2.4e-07 59.7 107 33.6
Glyma.08G232500 Glycine max HOM05D001204 ORTHO05D001428 2.4e-07 59.7 104 33.7
Phvul.002G234400 Phaseolus vulgaris HOM05D001204 ORTHO05D001428 2.4e-07 59.7 93 35.5
SalBow4G0134 Salvia bowleyana HOM05D001204 ORTHO05D001428 2.4e-07 59.7 88 36.4
SalBow4G0146 Salvia bowleyana HOM05D001204 ORTHO05D001428 2.4e-07 59.7 88 36.4
Ciclev10033694m.g Citrus clementina HOM05D001204 ORTHO05D001428 3.1e-07 59.3 112 28.6
PSO339G5879 Papaver somniferum HOM05D001204 ORTHO05D001428 3.1e-07 59.3 107 30.8
Cpa.g.sc23.158 Carica papaya HOM05D001204 ORTHO05D001428 4.1e-07 58.9 116 31.0
FAN01G0173 Fragaria x ananassa HOM05D001204 ORTHO05D001428 4.1e-07 58.9 109 34.9
FAN14G5429 Fragaria x ananassa HOM05D001204 ORTHO05D001428 4.1e-07 58.9 109 34.9
Sed0004540 Sechium edule HOM05D001204 ORTHO05D009253 4.1e-07 58.9 116 31.0
Lj9P619T29 Lonicera japonica HOM05D001204 ORTHO05D001428 5.3e-07 58.5 93 35.5
Actinidia05840 Actinidia chinensis HOM05D001204 ORTHO05D001428 7.0e-07 58.2 111 29.7
Aqoxy279s003 Aquilegia oxysepala HOM05D001204 ORTHO05D001428 7.0e-07 58.2 106 29.2
ClCG09G003660 Citrullus lanatus HOM05D001204 ORTHO05D001428 7.0e-07 58.2 119 30.3
PGR031G2307 Punica granatum HOM05D001204 ORTHO05D001428 7.0e-07 58.2 161 29.2
GSVIVG01001350001 Vitis vinifera HOM05D001204 ORTHO05D001428 7.0e-07 58.2 105 29.5
HanXRQChr04g0117421 Helianthus annuus HOM05D001204 ORTHO05D001428 9.1e-07 57.8 91 30.8
PSO384G1652 Papaver somniferum HOM05D001204 ORTHO05D001428 9.1e-07 57.8 107 29.9
Thecc.03G033700 Theobroma cacao HOM05D001204 ORTHO05D009253 9.1e-07 57.8 86 30.2
Duzib068G0900 Durio zibethinus HOM05D001204 ORTHO05D009253 1.2e-06 57.4 86 34.9
Gohir.A08G011600 Gossypium hirsutum HOM05D001204 ORTHO05D001428 1.2e-06 57.4 112 30.4
MD07G1000800 Malus domestica HOM05D001204 ORTHO05D001428 1.2e-06 57.4 108 29.6
Sabra16G0138800 Salix brachista HOM05D001204 ORTHO05D001428 1.2e-06 57.4 117 29.1
arahy.Tifrunner.gnm1.ann1.ZSXS9S Arachis hypogaea HOM05D001204 ORTHO05D001428 1.6e-06 57.0 113 33.6
Rhsim07G0049400 Rhododendron simsii HOM05D001204 ORTHO05D001428 1.6e-06 57.0 105 30.5
TWI09G1507 Tripterygium wilfordii HOM05D001204 ORTHO05D001428 1.6e-06 57.0 116 33.6
ECA236G5040 Erigeron canadensis HOM05D001204 ORTHO05D001428 2.0e-06 56.6 91 30.8
FvH4_7g00060 Fragaria vesca HOM05D001204 ORTHO05D001428 2.0e-06 56.6 109 34.9
FAN06G2784 Fragaria x ananassa HOM05D001204 ORTHO05D001428 2.0e-06 56.6 109 34.9
Gorai.004G017400 Gossypium raimondii HOM05D001204 ORTHO05D001428 2.0e-06 56.6 112 30.4
MD14G1225900 Malus domestica HOM05D001204 ORTHO05D009253 2.0e-06 56.6 113 31.0
Oeu041510.1 Olea europaea HOM05D001204 ORTHO05D001428 2.0e-06 56.6 118 32.2
Os03g0167000 Oryza sativa ssp. japonica HOM05D001204 ORTHO05D001428 2.0e-06 56.6 122 31.1
Aa31LG6G8970 Aethionema arabicum HOM05D000489 ORTHO05D010756 2.6e-06 56.2 102 34.3
Dinv43502 Davidia involucrata HOM05D001204 ORTHO05D001428 2.6e-06 56.2 89 32.6
Gohir.A05G000700 Gossypium hirsutum HOM05D001204 ORTHO05D001428 2.6e-06 56.2 86 32.6
Sp4g26360 Schrenkiella parvula HOM05D001204 ORTHO05D001428 2.6e-06 56.2 108 28.7
TAR622G0486 Trochodendron aralioides HOM05D001204 ORTHO05D009253 2.6e-06 56.2 118 30.5
Actinidia30643 Actinidia chinensis HOM05D005303 ORTHO05D006331 3.5e-06 55.8 93 32.3
ClCG06G014900 Citrullus lanatus HOM05D001204 ORTHO05D009253 3.5e-06 55.8 114 30.7
QL04p001667 Quercus lobata HOM05D001204 ORTHO05D001428 3.5e-06 55.8 104 29.8
arahy.Tifrunner.gnm1.ann1.9UY3NV Arachis hypogaea HOM05D001204 ORTHO05D009253 4.5e-06 55.5 93 35.5
CAN.G1361.3 Capsicum annuum HOM05D001204 ORTHO05D001428 4.5e-06 55.5 89 32.6
CiPaw.16G085700 Carya illinoinensis HOM05D001204 ORTHO05D009253 4.5e-06 55.5 120 31.7
DCAR_018434 Daucus carota HOM05D000489 ORTHO05D000372 4.5e-06 55.5 122 35.2
Glyma.05G154600 Glycine max HOM05D001204 ORTHO05D001428 4.5e-06 55.5 86 33.7
Glyma.08G112300 Glycine max HOM05D001204 ORTHO05D001428 4.5e-06 55.5 86 33.7
SEGI_17852 Sequoiadendron giganteum HOM05D001204 ORTHO05D001428 4.5e-06 55.5 108 32.4
CiPaw.13G000500 Carya illinoinensis HOM05D001204 ORTHO05D001428 7.7e-06 54.7 88 30.7
CsaV3_7G031530 Cucumis sativus L. HOM05D004544 ORTHO05D005504 7.7e-06 54.7 86 32.6
Lj1A49T58 Lonicera japonica HOM05D000489 ORTHO05D000372 7.7e-06 54.7 117 33.3
SMO166G0001 Selaginella moellendorffii HOM05D001204 ORTHO05D001428 7.7e-06 54.7 105 28.6
SGA_v2.0_scaffold9G04789 Striga asiatica HOM05D005303 ORTHO05D006331 7.7e-06 54.7 123 30.1
Thecc.01G416800 Theobroma cacao HOM05D001204 ORTHO05D001428 7.7e-06 54.7 97 32.0


User provided reference genes

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