Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c19_13560 Physcomitrium patens HOM05D016224 ORTHO05D023076 0.0e+00 1086.2 585 100.0
Pp3c22_14520 Physcomitrium patens HOM05D016224 ORTHO05D023076 3.7e-151 539.3 605 52.2
Pp3c18_6640 Physcomitrium patens HOM05D016224 ORTHO05D023076 1.3e-79 301.6 521 41.3
Pp3c12_23140 Physcomitrium patens HOM05D016224 ORTHO05D023076 4.0e-28 130.6 435 30.1
Pp3c8_3850 Physcomitrium patens HOM05D016224 ORTHO05D023076 9.9e-27 125.9 446 30.5
AagrBONN_evm.TU.Sc2ySwM_228.2886 Anthoceros agrestis HOM05D000085 ORTHO05D001756 4.3e-22 110.5 148 37.8
AagrBONN_evm.TU.Sc2ySwM_117.1414 Anthoceros agrestis HOM05D016224 ORTHO05D010508 3.8e-18 97.4 153 37.9
Pp3c4_3630 Physcomitrium patens HOM05D016224 ORTHO05D023076 8.4e-18 96.3 236 31.4
Pp3c15_19890 Physcomitrium patens HOM05D006074 ORTHO05D008728 2.4e-17 94.7 189 30.2
Pp3c8_1070 Physcomitrium patens HOM05D000085 ORTHO05D001756 3.9e-15 87.4 203 30.5
AagrBONN_evm.TU.Sc2ySwM_117.1415 Anthoceros agrestis HOM05D016224 ORTHO05D010508 5.1e-15 87.0 206 31.6
PSO675G2913 Papaver somniferum HOM05D000085 ORTHO05D006184 1.5e-14 85.5 152 26.3
Pp3c10_2120 Physcomitrium patens HOM05D006074 ORTHO05D020966 9.6e-14 82.8 152 32.2
Pp3c17_19290 Physcomitrium patens HOM05D000085 ORTHO05D001756 2.1e-13 81.6 155 30.3
TWI79G0144 Tripterygium wilfordii HOM05D000085 ORTHO05D006184 2.1e-13 81.6 151 28.5
Gorai.011G223900 Gossypium raimondii HOM05D000085 ORTHO05D006184 3.6e-13 80.9 147 28.6
Gohir.D10G199700 Gossypium hirsutum HOM05D000085 ORTHO05D006184 4.8e-13 80.5 176 26.7
DCAR_029721 Daucus carota HOM05D000085 ORTHO05D006184 8.1e-13 79.7 159 24.5
Pp3c24_19020 Physcomitrium patens HOM05D026724 ORTHO05D026055 1.4e-12 79.0 190 30.5
Thecc.10G132100 Theobroma cacao HOM05D000085 ORTHO05D006184 4.0e-12 77.4 243 24.3
Pp3c3_13770 Physcomitrium patens HOM05D026724 ORTHO05D020966 9.0e-12 76.3 201 26.4
PSO541G3755 Papaver somniferum HOM05D000085 ORTHO05D006184 1.2e-11 75.9 163 23.9
Duzib128G0691 Durio zibethinus HOM05D000085 ORTHO05D006184 1.5e-11 75.5 163 23.9
Lj6g0021794 Lotus japonicus HOM05D000085 ORTHO05D015977 1.5e-11 75.5 179 25.7
Pp3c1_20750 Physcomitrium patens HOM05D006074 ORTHO05D020966 1.5e-11 75.5 272 29.0
Pp3c1_20753 Physcomitrium patens HOM05D006074 ORTHO05D020966 1.5e-11 75.5 272 29.0
Pp3c2_18540 Physcomitrium patens HOM05D006074 ORTHO05D020966 1.5e-11 75.5 147 28.6
Pp3c10_1080 Physcomitrium patens HOM05D006074 ORTHO05D008728 2.6e-11 74.7 272 26.1
MBI19_g24735_MAGBIO Magnolia biondii HOM05D000085 ORTHO05D006184 4.5e-11 73.9 159 27.0
Peaxi162Scf00066g01519 Petunia axillaris HOM05D000085 ORTHO05D009791 4.5e-11 73.9 164 30.5
Manes.04G153800 Manihot esculenta HOM05D000085 ORTHO05D006184 5.8e-11 73.6 262 22.5
Potri.001G224800 Populus trichocarpa HOM05D000085 ORTHO05D006184 5.8e-11 73.6 151 29.1
TAR628G0721 Trochodendron aralioides HOM05D000085 ORTHO05D009791 5.8e-11 73.6 214 28.5
PGR119G1958 Punica granatum HOM05D000085 ORTHO05D006184 9.9e-11 72.8 171 26.9
Aqoxy2G00032 Aquilegia oxysepala HOM05D000085 ORTHO05D006184 1.3e-10 72.4 161 24.8
CAN.G46.6 Capsicum annuum HOM05D000085 ORTHO05D009791 2.2e-10 71.6 168 30.4
Manes.01G176300 Manihot esculenta HOM05D000085 ORTHO05D006184 2.2e-10 71.6 173 26.0
Actinidia24490 Actinidia chinensis HOM05D000085 ORTHO05D006184 6.4e-10 70.1 163 25.8
Pp3c23_20410 Physcomitrium patens HOM05D006074 ORTHO05D026055 6.4e-10 70.1 152 30.3
Solyc04g063370.3 Solanum lycopersicum HOM05D000085 ORTHO05D009791 6.4e-10 70.1 165 29.7
Sopen04g026290 Solanum pennellii HOM05D000085 ORTHO05D009791 8.4e-10 69.7 170 30.6
CSS0024542 Camellia sinensis var. sinensis HOM05D000085 ORTHO05D009791 1.1e-09 69.3 120 31.7
Pp3c26_7470 Physcomitrium patens HOM05D026724 ORTHO05D020966 1.1e-09 69.3 181 27.6
Potri.003G189850 Populus trichocarpa HOM05D000085 ORTHO05D006184 1.1e-09 69.3 252 19.8
Haze_23539 Corylus avellana HOM05D004862 ORTHO05D005841 1.9e-09 68.6 160 21.9
MBI19_g24736_MAGBIO Magnolia biondii HOM05D000085 ORTHO05D006184 1.9e-09 68.6 157 24.2
Mapoly0095s0067 Marchantia polymorpha HOM05D008363 ORTHO05D010508 1.9e-09 68.6 160 30.0
Pp3c13_19300 Physcomitrium patens HOM05D026724 ORTHO05D020966 1.9e-09 68.6 250 26.8
Potri.005G185500 Populus trichocarpa HOM05D000085 ORTHO05D009791 2.4e-09 68.2 261 27.6
Atru.chr13.1646 Acer truncatum HOM05D000085 ORTHO05D009791 3.2e-09 67.8 210 26.2
MELO3C008431.2 Cucumis melo HOM05D000085 ORTHO05D009791 3.2e-09 67.8 197 28.9
CsaV3_6G031170 Cucumis sativus L. HOM05D000085 ORTHO05D009791 3.2e-09 67.8 159 30.2
Pp3c20_4730 Physcomitrium patens HOM05D006074 ORTHO05D026055 3.2e-09 67.8 230 26.1
Sed0010025 Sechium edule HOM05D000085 ORTHO05D009791 4.2e-09 67.4 197 28.4
Ciclev10003429m.g Citrus clementina HOM05D000085 ORTHO05D009791 7.1e-09 66.6 236 28.8
Duzib168G1166 Durio zibethinus HOM05D000085 ORTHO05D006184 7.1e-09 66.6 158 24.1
Lj4A685T34 Lonicera japonica HOM05D000085 ORTHO05D009791 7.1e-09 66.6 123 30.1
PGR044G1330 Punica granatum HOM05D000085 ORTHO05D006184 7.1e-09 66.6 147 21.8
MBI03_g20848_MAGBIO Magnolia biondii HOM05D000085 ORTHO05D009791 1.2e-08 65.9 144 29.9
Sed0014409 Sechium edule HOM05D000085 ORTHO05D006184 1.2e-08 65.9 151 26.5
DCAR_031504 Daucus carota HOM05D000085 ORTHO05D009791 1.6e-08 65.5 115 32.2
Gorai.001G043200 Gossypium raimondii HOM05D000085 ORTHO05D006184 2.1e-08 65.1 161 26.1
Manes.02G172500 Manihot esculenta HOM05D000085 ORTHO05D009791 2.1e-08 65.1 241 26.6
Medtr0205s0040 Medicago truncatula HOM05D000085 ORTHO05D015977 2.7e-08 64.7 142 23.9
Pp3c9_19570 Physcomitrium patens HOM05D006074 ORTHO05D008728 3.5e-08 64.3 248 25.4
SalBow6G4001 Salvia bowleyana HOM05D000085 ORTHO05D009791 4.6e-08 63.9 154 29.9
TPR.G16401 Trifolium pratense HOM05D000085 ORTHO05D006184 4.6e-08 63.9 149 25.5
Cpa.g.sc26.71 Carica papaya HOM05D000085 ORTHO05D009791 6.0e-08 63.5 220 25.9
Gohir.A07G036650 Gossypium hirsutum HOM05D000085 ORTHO05D006184 6.0e-08 63.5 161 26.1
LjContig00564g0025361 Lotus japonicus HOM05D000085 ORTHO05D006184 6.0e-08 63.5 152 22.4
Zm00001eb145720 Zea mays HOM05D000085 ORTHO05D009791 6.0e-08 63.5 115 28.7
FAN13G1991 Fragaria x ananassa HOM05D008363 ORTHO05D010508 7.9e-08 63.2 151 29.1
Medtr4g128180 Medicago truncatula HOM05D000085 ORTHO05D006184 1.0e-07 62.8 149 24.2
Thecc.09G256900 Theobroma cacao HOM05D000085 ORTHO05D006184 1.0e-07 62.8 162 25.3
MELO3C011783.2 Cucumis melo HOM05D000085 ORTHO05D006184 1.3e-07 62.4 158 24.7
FAN08G0799 Fragaria x ananassa HOM05D008363 ORTHO05D010508 1.8e-07 62.0 148 29.1
FAN18G1001 Fragaria x ananassa HOM05D008363 ORTHO05D010508 1.8e-07 62.0 148 29.1
arahy.Tifrunner.gnm1.ann1.F9JT0R Arachis hypogaea HOM05D000085 ORTHO05D006184 3.0e-07 61.2 157 24.2
Migut.C01091 Erythranthe guttata HOM05D000085 ORTHO05D009791 3.0e-07 61.2 228 28.1
FvH4_5g22141 Fragaria vesca HOM05D008363 ORTHO05D010508 3.0e-07 61.2 148 29.1
FAN04G2847 Fragaria x ananassa HOM05D008363 ORTHO05D010508 3.0e-07 61.2 148 29.1
Glyma.06G120400 Glycine max HOM05D000085 ORTHO05D009791 3.0e-07 61.2 120 30.8
ClCG08G006270 Citrullus lanatus HOM05D000085 ORTHO05D009791 3.9e-07 60.8 187 27.8
Lj9A652T57 Lonicera japonica HOM05D000085 ORTHO05D006184 3.9e-07 60.8 285 21.4
TAR376G0490 Trochodendron aralioides HOM05D000085 ORTHO05D011292 3.9e-07 60.8 169 27.8
Nitab4.5_0000174g0070 Nicotiana tabacum HOM05D000085 ORTHO05D009791 6.7e-07 60.1 175 28.0
PGR031G0712 Punica granatum HOM05D000085 ORTHO05D006184 6.7e-07 60.1 204 23.0
RcHm_v2.0_Chr7g0209801 Rosa chinensis HOM05D008363 ORTHO05D010508 6.7e-07 60.1 150 28.7
TPR.G6314 Trifolium pratense HOM05D000085 ORTHO05D009791 6.7e-07 60.1 117 26.5
VMungo0647G1792 Vigna mungo HOM05D000085 ORTHO05D006184 6.7e-07 60.1 189 23.8
Cpa.g.sc33.152 Carica papaya HOM05D000085 ORTHO05D006184 8.7e-07 59.7 136 22.1
Lsat_1_v5_gn_9_119161 Lactuca sativa HOM05D000085 ORTHO05D011292 8.7e-07 59.7 182 26.4
Phvul.009G133000 Phaseolus vulgaris HOM05D000085 ORTHO05D009791 8.7e-07 59.7 118 28.8
Actinidia29501 Actinidia chinensis HOM05D000085 ORTHO05D009791 1.1e-06 59.3 223 26.9
CAN.G134.31 Capsicum annuum HOM05D000085 ORTHO05D006184 1.1e-06 59.3 151 24.5
ECA240G1835 Erigeron canadensis HOM05D000085 ORTHO05D011292 1.1e-06 59.3 187 25.1
TAR636G2722 Trochodendron aralioides HOM05D008363 ORTHO05D010508 1.9e-06 58.5 147 28.6
Actinidia03435 Actinidia chinensis HOM05D000085 ORTHO05D009791 2.5e-06 58.2 228 25.4
CsaV3_5G029350 Cucumis sativus L. HOM05D000085 ORTHO05D006184 2.5e-06 58.2 138 25.4
Lj2A829G58 Lonicera japonica HOM05D000085 ORTHO05D006184 2.5e-06 58.2 145 22.1
Pp3c11_18470 Physcomitrium patens HOM05D000085 ORTHO05D001756 2.5e-06 58.2 155 23.9
Nitab4.5_0004168g0020 Nicotiana tabacum HOM05D000085 ORTHO05D006184 3.3e-06 57.8 151 24.5
Psat5g083480 Pisum sativum HOM05D000085 ORTHO05D009791 3.3e-06 57.8 120 25.0
arahy.Tifrunner.gnm1.ann1.RDL00W Arachis hypogaea HOM05D000085 ORTHO05D006184 4.3e-06 57.4 157 21.7
Cfa018397 Carpinus fangiana HOM05D000085 ORTHO05D009791 4.3e-06 57.4 177 28.8
Prupe.5G035100 Prunus persica HOM05D008363 ORTHO05D010508 4.3e-06 57.4 151 27.8
Glyma.13G036300 Glycine max HOM05D000085 ORTHO05D009791 5.6e-06 57.0 111 27.9
Lsat_1_v5_gn_2_96380 Lactuca sativa HOM05D000085 ORTHO05D006184 5.6e-06 57.0 147 25.9
Solyc01g096690.3 Solanum lycopersicum HOM05D000085 ORTHO05D006184 5.6e-06 57.0 152 23.7
Dinv03741 Davidia involucrata HOM05D000085 ORTHO05D006184 7.4e-06 56.6 103 26.2
Nitab4.5_0007610g0030 Nicotiana tabacum HOM05D000085 ORTHO05D006184 7.4e-06 56.6 151 24.5
Psat0s2703g0120 Pisum sativum HOM05D000085 ORTHO05D006184 7.4e-06 56.6 149 24.2
PGSC0003DMG400003294 Solanum tuberosum HOM05D000085 ORTHO05D006184 9.6e-06 56.2 152 23.0
TWI60G0672 Tripterygium wilfordii HOM05D000085 ORTHO05D009791 9.6e-06 56.2 235 24.3


User provided reference genes

Program Settings