Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c19_1061 Physcomitrium patens HOM05D007587 ORTHO05D009657 1.6e-22 108.2 44 100.0
Pp3c19_1062 Physcomitrium patens HOM05D007587 ORTHO05D009657 1.6e-22 108.2 44 100.0
Pp3c20_19960 Physcomitrium patens HOM05D007587 ORTHO05D009657 4.5e-17 90.1 44 81.8
Pp3c24_89 Physcomitrium patens HOM05D007587 ORTHO05D009657 4.7e-14 80.1 44 72.7
CAN.G416.39 Capsicum annuum HOM05D007587 ORTHO05D009657 8.3e-11 69.3 44 63.6
Nitab4.5_0015343g0010 Nicotiana tabacum HOM05D007587 ORTHO05D009657 1.1e-10 68.9 44 65.9
Gohir.A01G124700 Gossypium hirsutum HOM05D007587 ORTHO05D009657 2.4e-10 67.8 44 59.1
Gohir.D01G112300 Gossypium hirsutum HOM05D007587 ORTHO05D009657 2.4e-10 67.8 44 59.1
Gorai.002G137200 Gossypium raimondii HOM05D007587 ORTHO05D009657 2.4e-10 67.8 44 59.1
Atru.chr13.897 Acer truncatum HOM05D007587 ORTHO05D009657 3.1e-10 67.4 44 59.1
Manes.18G051550 Manihot esculenta HOM05D007587 ORTHO05D009657 3.1e-10 67.4 44 61.4
PGSC0003DMG400004952 Solanum tuberosum HOM05D007587 ORTHO05D009657 3.1e-10 67.4 44 61.4
vmacro04608 Vaccinium macrocarpon HOM05D007587 ORTHO05D009657 7.0e-10 66.2 44 61.4
CSS0045179 Camellia sinensis var. sinensis HOM05D007587 ORTHO05D009657 9.1e-10 65.9 44 59.1
Thecc.08G082100 Theobroma cacao HOM05D007587 ORTHO05D009657 1.6e-09 65.1 44 54.5
GSVIVG01034787001 Vitis vinifera HOM05D007587 ORTHO05D009657 2.0e-09 64.7 44 56.8
CDE06G1347 Ceratophyllum demersum HOM05D007587 ORTHO05D009657 2.7e-09 64.3 44 56.8
SalBow7G1850 Salvia bowleyana HOM05D007587 ORTHO05D009657 2.7e-09 64.3 44 61.4
COL.COLO4_35374 Corchorus olitorius HOM05D007587 ORTHO05D009657 3.5e-09 63.9 44 54.5
vmacro04607 Vaccinium macrocarpon HOM05D007587 ORTHO05D009657 3.5e-09 63.9 44 59.1
Potri.005G150300 Populus trichocarpa HOM05D007587 ORTHO05D009657 4.5e-09 63.5 44 56.8
vmacro04609 Vaccinium macrocarpon HOM05D007587 ORTHO05D009657 4.5e-09 63.5 44 59.1
Rhsim07G0216100 Rhododendron simsii HOM05D007587 ORTHO05D009657 5.9e-09 63.2 44 59.1
Rhsim07G0216200 Rhododendron simsii HOM05D007587 ORTHO05D009657 5.9e-09 63.2 44 59.1
Nn5g27362 Nelumbo nucifera HOM05D007587 ORTHO05D009657 1.0e-08 62.4 44 54.5
AagrBONN_evm.TU.Sc2ySwM_117.169 Anthoceros agrestis HOM05D007587 ORTHO05D009657 1.3e-08 62.0 44 59.1
QL02p001961 Quercus lobata HOM05D007587 ORTHO05D009657 1.7e-08 61.6 44 54.5
Cfa017911 Carpinus fangiana HOM05D007587 ORTHO05D009657 2.9e-08 60.8 44 47.7
CiPaw.15G043600 Carya illinoinensis HOM05D007587 ORTHO05D009657 2.9e-08 60.8 44 54.5
CSS0038445 Camellia sinensis var. sinensis HOM05D007587 ORTHO05D009657 5.0e-08 60.1 44 54.5
QL06p044263 Quercus lobata HOM05D007587 ORTHO05D009657 5.0e-08 60.1 44 52.3
Zm00001eb135300 Zea mays HOM05D007587 ORTHO05D009657 5.0e-08 60.1 44 61.4
Nn5g27360 Nelumbo nucifera HOM05D007587 ORTHO05D009657 6.5e-08 59.7 44 54.5
Atru.chr3.473 Acer truncatum HOM05D007587 ORTHO05D009657 8.5e-08 59.3 44 52.3
Actinidia29637 Actinidia chinensis HOM05D007587 ORTHO05D009657 8.5e-08 59.3 44 52.3
Migut.O00867 Erythranthe guttata HOM05D007587 ORTHO05D009657 8.5e-08 59.3 44 54.5
Phvul.003G249500 Phaseolus vulgaris HOM05D007587 ORTHO05D009657 8.5e-08 59.3 44 54.5
CBR_g28808 Chara braunii HOM05D007587 ORTHO05D009657 1.1e-07 58.9 44 47.7
Migut.H00502 Erythranthe guttata HOM05D007587 ORTHO05D009657 1.1e-07 58.9 44 59.1
Nn4g24320 Nelumbo nucifera HOM05D007587 ORTHO05D009657 1.1e-07 58.9 44 50.0
Cpa.g.sc15.59 Carica papaya HOM05D007587 ORTHO05D009657 1.5e-07 58.5 44 56.8
Migut.C00432 Erythranthe guttata HOM05D007587 ORTHO05D009657 1.5e-07 58.5 44 54.5
Nn5g27361 Nelumbo nucifera HOM05D007587 ORTHO05D009657 1.5e-07 58.5 44 52.3
Glyma.16G143900 Glycine max HOM05D007587 ORTHO05D009657 1.9e-07 58.2 44 50.0
MBI16_g05021_MAGBIO Magnolia biondii HOM05D007587 ORTHO05D009657 1.9e-07 58.2 44 50.0
Os12g0596101 Oryza sativa ssp. japonica HOM05D007587 ORTHO05D009657 1.9e-07 58.2 44 56.8
TPR.G29850 Trifolium pratense HOM05D007587 ORTHO05D009657 1.9e-07 58.2 44 52.3
TAR381G0827 Trochodendron aralioides HOM05D007587 ORTHO05D009657 1.9e-07 58.2 44 52.3
CDE04G0885 Ceratophyllum demersum HOM05D007587 ORTHO05D009657 2.5e-07 57.8 44 50.0
COL.COLO4_22178 Corchorus olitorius HOM05D007587 ORTHO05D009657 3.2e-07 57.4 44 50.0
MBI16_g05020_MAGBIO Magnolia biondii HOM05D007587 ORTHO05D009657 3.2e-07 57.4 44 52.3
arahy.Tifrunner.gnm1.ann1.986LRW Arachis hypogaea HOM05D007587 ORTHO05D009657 4.2e-07 57.0 44 47.7
arahy.Tifrunner.gnm1.ann1.JQT6QK Arachis hypogaea HOM05D007587 ORTHO05D009657 4.2e-07 57.0 44 47.7
CiPaw.15G043500 Carya illinoinensis HOM05D007587 ORTHO05D009657 4.2e-07 57.0 44 52.3
ECA238G1538 Erigeron canadensis HOM05D003002 ORTHO05D002276 4.2e-07 57.0 44 50.0
FAN23G2556 Fragaria x ananassa HOM05D007587 ORTHO05D009657 4.2e-07 57.0 44 52.3
FAN28G1310 Fragaria x ananassa HOM05D007587 ORTHO05D009657 4.2e-07 57.0 44 52.3
Psat0s261g0120 Pisum sativum HOM05D007587 ORTHO05D009657 4.2e-07 57.0 44 50.0
Psat2g163680 Pisum sativum HOM05D007587 ORTHO05D009657 4.2e-07 57.0 44 50.0
Thecc.01G045600 Theobroma cacao HOM05D007587 ORTHO05D009657 4.2e-07 57.0 44 47.7
TAR381G1104 Trochodendron aralioides HOM05D007587 ORTHO05D009657 4.2e-07 57.0 44 50.0
Ciclev10027038m.g Citrus clementina HOM05D007587 ORTHO05D009657 5.5e-07 56.6 44 45.5
FAN26G0670 Fragaria x ananassa HOM05D007587 ORTHO05D009657 5.5e-07 56.6 44 52.3
Lsat_1_v5_gn_2_87241 Lactuca sativa HOM05D007587 ORTHO05D009657 5.5e-07 56.6 44 47.7
Lsat_1_v5_gn_3_93981 Lactuca sativa HOM05D007587 ORTHO05D009657 7.2e-07 56.2 44 54.5
Medtr5g018610 Medicago truncatula HOM05D007587 ORTHO05D009657 9.4e-07 55.8 44 47.7
Manes.13G132300 Manihot esculenta HOM05D007587 ORTHO05D009657 1.2e-06 55.5 44 47.7
Mapoly0026s0006 Marchantia polymorpha HOM05D007587 ORTHO05D009657 1.2e-06 55.5 44 47.7
Prupe.7G145500 Prunus persica HOM05D007587 ORTHO05D009657 1.2e-06 55.5 44 47.7
Solyc02g090080.1 Solanum lycopersicum HOM05D007587 ORTHO05D009657 1.6e-06 55.1 44 47.7
Nitab4.5_0005594g0030 Nicotiana tabacum HOM05D007587 ORTHO05D009657 2.1e-06 54.7 44 45.5
Cc07_g05380 Coffea canephora HOM05D007587 ORTHO05D009657 2.7e-06 54.3 44 50.0
Dinv39924 Davidia involucrata HOM05D007587 ORTHO05D009657 3.6e-06 53.9 44 45.5
Gohir.A11G188150 Gossypium hirsutum HOM05D007587 ORTHO05D009657 3.6e-06 53.9 44 50.0
Gohir.D11G194650 Gossypium hirsutum HOM05D007587 ORTHO05D009657 3.6e-06 53.9 44 50.0
Gorai.007G208100 Gossypium raimondii HOM05D007587 ORTHO05D009657 3.6e-06 53.9 44 50.0
Lj7C15T6 Lonicera japonica HOM05D007587 ORTHO05D009657 4.7e-06 53.5 44 52.3
Cc10_g07830 Coffea canephora HOM05D007587 ORTHO05D009657 6.1e-06 53.1 44 50.0
SalBow1G8004 Salvia bowleyana HOM05D007587 ORTHO05D009657 8.0e-06 52.8 44 50.0


User provided reference genes

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