Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c18_8320 Physcomitrium patens HOM05D006696 ORTHO05D008683 0.0e+00 1282.3 627 100.0
AagrBONN_evm.TU.Sc2ySwM_228.1723 Anthoceros agrestis HOM05D006696 ORTHO05D008683 3.2e-180 636.0 621 52.3
SMO011G0006 Selaginella moellendorffii HOM05D006696 ORTHO05D008683 4.6e-179 632.1 573 53.6
Mapoly0117s0009 Marchantia polymorpha HOM05D006696 ORTHO05D008683 8.0e-176 621.3 586 54.4
Psat7g231000 Pisum sativum HOM05D006696 ORTHO05D008683 5.2e-175 618.6 573 54.3
TAR629G0060 Trochodendron aralioides HOM05D006696 ORTHO05D008683 2.2e-173 613.2 577 52.3
Hma1.2p1_0301F.1_g118560 Hydrangea macrophylla HOM05D006696 ORTHO05D008683 5.4e-172 608.6 575 52.5
TWI14G1225 Tripterygium wilfordii HOM05D006696 ORTHO05D008683 5.4e-172 608.6 576 53.6
Aa31LG1G11340 Aethionema arabicum HOM05D006696 ORTHO05D008683 1.2e-171 607.4 574 53.3
Ca_19926_v3 Cicer arietinum L. HOM05D006696 ORTHO05D008683 1.2e-171 607.4 576 52.8
Rhsim01G0149400 Rhododendron simsii HOM05D006696 ORTHO05D008683 1.6e-171 607.1 572 53.0
Nn6g34076 Nelumbo nucifera HOM05D006696 ORTHO05D008683 6.0e-171 605.1 581 52.5
Aqoxy7G00691 Aquilegia oxysepala HOM05D006696 ORTHO05D008683 1.0e-170 604.4 584 52.2
Thecc.08G173400 Theobroma cacao HOM05D006696 ORTHO05D008683 1.0e-170 604.4 571 53.8
TPR.G7586 Trifolium pratense HOM05D006696 ORTHO05D008683 2.3e-170 603.2 575 52.9
Medtr4g025130 Medicago truncatula HOM05D006696 ORTHO05D008683 3.0e-170 602.8 566 52.7
PSO782G1103 Papaver somniferum HOM05D006696 ORTHO05D008683 3.0e-170 602.8 567 52.0
Ciclev10019231m.g Citrus clementina HOM05D006696 ORTHO05D008683 6.6e-170 601.7 626 51.4
PGSC0003DMG400025962 Solanum tuberosum HOM05D006696 ORTHO05D008683 6.6e-170 601.7 573 53.1
COL.COLO4_24599 Corchorus olitorius HOM05D006696 ORTHO05D008683 1.9e-169 600.1 588 51.7
ClCG05G002380 Citrullus lanatus HOM05D006696 ORTHO05D008683 2.5e-169 599.7 621 52.2
FAN03G1153 Fragaria x ananassa HOM05D006696 ORTHO05D008683 3.3e-169 599.4 573 52.2
Lalb_Chr07g0189961 Lupinus albus HOM05D006696 ORTHO05D008683 3.3e-169 599.4 571 53.1
AL1G10260 Arabidopsis lyrata HOM05D006696 ORTHO05D008683 4.3e-169 599.0 575 52.7
Sopen01g036880 Solanum pennellii HOM05D006696 ORTHO05D008683 4.3e-169 599.0 572 52.4
Prupe.2G142200 Prunus persica HOM05D006696 ORTHO05D008683 7.3e-169 598.2 578 53.1
CAN.G388.34 Capsicum annuum HOM05D006696 ORTHO05D008683 9.5e-169 597.8 573 52.5
FAN01G1519 Fragaria x ananassa HOM05D006696 ORTHO05D008683 9.5e-169 597.8 573 53.1
FvH4_7g11430 Fragaria vesca HOM05D006696 ORTHO05D008683 1.2e-168 597.4 575 53.7
AUR62004189 Chenopodium quinoa HOM05D006696 ORTHO05D008683 1.6e-168 597.0 570 52.8
MBI12_g20403_MAGBIO Magnolia biondii HOM05D006696 ORTHO05D008683 1.6e-168 597.0 573 52.0
Atru.chr5.281 Acer truncatum HOM05D006696 ORTHO05D008683 2.1e-168 596.7 630 50.8
CiPaw.01G264000 Carya illinoinensis HOM05D006696 ORTHO05D008683 2.1e-168 596.7 585 52.5
Migut.B01614 Erythranthe guttata HOM05D006696 ORTHO05D008683 2.8e-168 596.3 574 53.0
MD07G1119000 Malus domestica HOM05D006696 ORTHO05D008683 2.8e-168 596.3 594 51.5
Sabra02G0113800 Salix brachista HOM05D006696 ORTHO05D008683 4.7e-168 595.5 631 49.0
CsaV3_3G009820 Cucumis sativus L. HOM05D006696 ORTHO05D008683 6.2e-168 595.1 582 52.7
PSO478G1798 Papaver somniferum HOM05D006696 ORTHO05D008683 6.2e-168 595.1 565 51.9
Potri.002G146100 Populus trichocarpa HOM05D006696 ORTHO05D008683 6.2e-168 595.1 632 49.2
Sed0011228 Sechium edule HOM05D006696 ORTHO05D008683 6.2e-168 595.1 614 50.5
unitig_22.g5383 Utricularia gibba HOM05D006696 ORTHO05D008683 6.2e-168 595.1 588 52.0
CDE04G1815 Ceratophyllum demersum HOM05D006696 ORTHO05D008683 8.1e-168 594.7 597 51.3
THA.LOC104814083 Tarenaya hassleriana HOM05D006696 ORTHO05D008683 8.1e-168 594.7 598 50.8
SGA_v2.0_scaffold95G28911 Striga asiatica HOM05D006696 ORTHO05D008683 1.4e-167 594.0 588 51.5
MELO3C006203.2 Cucumis melo HOM05D006696 ORTHO05D008683 3.1e-167 592.8 621 51.0
FAN06G1977 Fragaria x ananassa HOM05D006696 ORTHO05D008683 4.0e-167 592.4 575 53.4
FAN06G3694 Fragaria x ananassa HOM05D006696 ORTHO05D008683 4.0e-167 592.4 573 52.7
EL10Ac1g00866 Beta vulgaris HOM05D006696 ORTHO05D008683 5.2e-167 592.0 569 52.5
Lj7C531T6 Lonicera japonica HOM05D006696 ORTHO05D008683 5.2e-167 592.0 569 52.2
Gohir.D13G120600 Gossypium hirsutum HOM05D006696 ORTHO05D008683 6.8e-167 591.7 570 51.6
Ah.05g174590 Amaranthus hybridus HOM05D006696 ORTHO05D008683 1.5e-166 590.5 568 53.3
Gorai.013G134800 Gossypium raimondii HOM05D006696 ORTHO05D008683 1.5e-166 590.5 570 51.4
Solyc01g091130.4 Solanum lycopersicum HOM05D006696 ORTHO05D008683 3.4e-166 589.3 570 52.5
Peaxi162Scf00013g03019 Petunia axillaris HOM05D006696 ORTHO05D008683 5.8e-166 588.6 571 52.0
Carub.0001s0021 Capsella rubella HOM05D006696 ORTHO05D008683 9.8e-166 587.8 572 51.9
Manes.01G267400 Manihot esculenta HOM05D006696 ORTHO05D008683 9.8e-166 587.8 617 50.6
AT1G02020 Arabidopsis thaliana HOM05D006696 ORTHO05D008683 1.3e-165 587.4 577 51.3
RcHm_v2.0_Chr1g0349711 Rosa chinensis HOM05D006696 ORTHO05D008683 1.7e-165 587.0 576 51.4
Glyma.03G028100 Glycine max HOM05D006696 ORTHO05D008683 2.9e-165 586.3 573 52.4
Haze_16792 Corylus avellana HOM05D006696 ORTHO05D008683 3.7e-165 585.9 577 51.1
SEGI_31859 Sequoiadendron giganteum HOM05D006696 ORTHO05D008683 3.7e-165 585.9 544 53.9
CSS0014714 Camellia sinensis var. sinensis HOM05D006696 ORTHO05D008683 4.9e-165 585.5 582 51.4
Cc02_g24120 Coffea canephora HOM05D006696 ORTHO05D008683 8.3e-165 584.7 574 51.6
MSTRG.20736 Avicennia marina HOM05D006696 ORTHO05D008683 1.1e-164 584.3 613 50.7
VMungo0331G0021 Vigna mungo HOM05D006696 ORTHO05D008683 1.1e-164 584.3 571 52.2
Gohir.A13G117300 Gossypium hirsutum HOM05D006696 ORTHO05D008683 2.4e-164 583.2 610 49.2
QL08p052869 Quercus lobata HOM05D006696 ORTHO05D008683 2.4e-164 583.2 588 51.0
Sp1g37340 Schrenkiella parvula HOM05D006696 ORTHO05D008683 9.2e-164 581.3 578 51.2
arahy.Tifrunner.gnm1.ann1.30BUB6 Arachis hypogaea HOM05D006696 ORTHO05D008683 1.7e-162 577.0 578 50.9
arahy.Tifrunner.gnm1.ann1.PBYD8I Arachis hypogaea HOM05D006696 ORTHO05D008683 1.7e-162 577.0 578 50.9
Eucgr.D02468 Eucalyptus grandis HOM05D006696 ORTHO05D008683 2.3e-162 576.6 582 50.0
CSS0026641 Camellia sinensis var. sinensis HOM05D006696 ORTHO05D008683 3.0e-162 576.2 581 50.1
Lsat_1_v5_gn_3_132380 Lactuca sativa HOM05D006696 ORTHO05D008683 3.0e-162 576.2 567 51.1
Nitab4.5_0000457g0140 Nicotiana tabacum HOM05D006696 ORTHO05D008683 3.9e-162 575.9 604 49.7
Nitab4.5_0010616g0010 Nicotiana tabacum HOM05D006696 ORTHO05D008683 8.6e-162 574.7 613 49.6
Hund27369 Selenicereus undatus HOM05D006696 ORTHO05D008683 8.6e-162 574.7 574 50.9
Phvul.010G081400 Phaseolus vulgaris HOM05D006696 ORTHO05D008683 4.3e-161 572.4 571 51.1
HanXRQChr03g0093971 Helianthus annuus HOM05D006696 ORTHO05D008683 3.6e-160 569.3 574 49.7
BcaB07g33486 Brassica carinata HOM05D006696 ORTHO05D008683 8.1e-160 568.2 607 49.9
Duzib177G0277 Durio zibethinus HOM05D006696 ORTHO05D008683 1.8e-159 567.0 563 51.5
vmacro21023 Vaccinium macrocarpon HOM05D006696 ORTHO05D008683 1.8e-159 567.0 662 45.6
C06p05680 Brassica napus HOM05D006696 ORTHO05D008683 6.8e-159 565.1 575 50.4
Thhalv10007140m.g Eutrema salsugineum HOM05D006696 ORTHO05D008683 2.0e-158 563.5 575 49.9
ECA232G1408 Erigeron canadensis HOM05D006696 ORTHO05D008683 1.7e-157 560.5 569 49.9
HPP92_022287 Vanilla planifolia HOM05D006696 ORTHO05D008683 2.2e-157 560.1 614 49.3
BcaC08g43220 Brassica carinata HOM05D006696 ORTHO05D008683 3.7e-157 559.3 576 50.2
BolC6t35679H Brassica oleracea HOM05D006696 ORTHO05D008683 3.7e-157 559.3 576 50.2
BraA06t23521Z Brassica rapa HOM05D006696 ORTHO05D008683 1.9e-156 557.0 570 50.4
A06p03080 Brassica napus HOM05D006696 ORTHO05D008683 7.1e-156 555.1 572 50.2
ATR0041G020 Amborella trichopoda HOM05D006696 ORTHO05D008683 1.3e-154 550.8 576 50.7
Cpa.g.sc611.2 Carica papaya HOM05D006696 ORTHO05D008683 1.2e-152 544.3 542 50.9
Sc26g0001290 Simmondsia chinensis HOM05D006696 ORTHO05D008683 2.8e-152 543.1 550 50.4
Lj3g0014279 Lotus japonicus HOM05D006696 ORTHO05D008683 1.9e-148 530.4 535 51.0
Os10g0190800 Oryza sativa ssp. japonica HOM05D006696 ORTHO05D008683 2.4e-148 530.0 578 48.3
GSVIVG01027661001 Vitis vinifera HOM05D006696 ORTHO05D008683 2.8e-144 516.5 565 47.6
SalBow5G3816 Salvia bowleyana HOM05D006696 ORTHO05D008683 4.8e-144 515.8 530 50.0
Zm00001eb145800 Zea mays HOM05D006696 ORTHO05D008683 1.9e-140 503.8 574 46.7
AUR62013656 Chenopodium quinoa HOM05D006696 ORTHO05D008683 1.2e-139 501.1 564 47.9
Actinidia33475 Actinidia chinensis HOM05D006696 ORTHO05D008683 6.5e-125 452.2 615 42.1
CARHR000330 Cardamine hirsuta HOM05D006696 ORTHO05D008683 5.3e-111 406.0 491 45.2
DCAR_015916 Daucus carota HOM05D006696 ORTHO05D008683 1.0e-93 348.6 371 47.2
Solyc01g091140.4 Solanum lycopersicum HOM05D006696 ORTHO05D008683 5.0e-77 293.1 513 36.3
Dinv32364 Davidia involucrata HOM05D006696 ORTHO05D008683 6.5e-77 292.7 242 57.4
CANSAT21G0759 Cannabis sativa HOM05D006696 ORTHO05D008683 8.0e-67 259.2 200 61.5
Oeu037929.1 Olea europaea HOM05D006696 ORTHO05D008683 1.2e-51 208.8 188 54.8
Sopen01g036900 Solanum pennellii HOM05D006696 ORTHO05D008683 4.0e-42 177.2 184 50.5
CARHR000320 Cardamine hirsuta HOM05D006696 ORTHO05D008683 6.4e-40 169.9 102 72.5
SGA_v2.0_scaffold581G53050 Striga asiatica HOM05D006696 ORTHO05D008683 3.4e-25 120.9 199 38.2
Zm00001eb027220 Zea mays HOM05D006696 ORTHO05D008683 2.5e-20 104.8 103 48.5
Sopen01g036890 Solanum pennellii HOM05D006696 ORTHO05D008683 3.3e-20 104.4 75 62.7
VMungo0720G2385 Vigna mungo HOM05D006696 ORTHO05D008683 9.0e-18 96.3 64 65.6
VMungo1309G0520 Vigna mungo HOM05D006696 ORTHO05D008683 4.2e-15 87.4 63 61.9
Cpa.g.sc14.75 Carica papaya HOM05D006696 ORTHO05D008683 2.1e-11 75.1 37 81.1
Atru.chr4.660 Acer truncatum HOM05D006696 ORTHO05D030753 5.3e-10 70.5 113 33.6
Phvul.010G066778 Phaseolus vulgaris HOM05D006696 ORTHO05D008683 3.8e-08 64.3 52 53.8
Atru.chr4.903 Acer truncatum HOM05D006696 ORTHO05D030753 8.4e-08 63.2 39 66.7
SalBow5G1567 Salvia bowleyana HOM05D006696 ORTHO05D008683 1.4e-07 62.4 38 68.4


User provided reference genes

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