Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c18_8240 Physcomitrium patens HOM05D004400 ORTHO05D005479 6.4e-235 817.0 403 100.0
Pp3c21_12100 Physcomitrium patens HOM05D004400 ORTHO05D005479 1.3e-224 782.7 403 95.3
Mapoly0001s0436 Marchantia polymorpha HOM05D004400 ORTHO05D005479 2.0e-191 672.5 402 81.8
AagrBONN_evm.TU.Sc2ySwM_344.3612 Anthoceros agrestis HOM05D004400 ORTHO05D005479 2.5e-186 655.6 403 78.7
SMO228G0177 Selaginella moellendorffii HOM05D004400 ORTHO05D005479 1.5e-183 646.4 403 77.4
CBR_g39952 Chara braunii HOM05D004400 ORTHO05D005479 2.2e-182 642.5 403 76.9
Pp3c1_24350 Physcomitrium patens HOM05D004400 ORTHO05D005479 1.2e-175 620.2 403 73.2
Sed0009312 Sechium edule HOM05D004400 ORTHO05D005479 5.3e-173 611.3 403 72.2
Prupe.4G258800 Prunus persica HOM05D004400 ORTHO05D005479 7.0e-173 610.9 403 72.2
MELO3C015151.2 Cucumis melo HOM05D004400 ORTHO05D005479 3.5e-172 608.6 403 72.0
CiPaw.14G115100 Carya illinoinensis HOM05D004400 ORTHO05D005479 1.0e-171 607.1 403 71.2
FAN11G2969 Fragaria x ananassa HOM05D004400 ORTHO05D005479 1.0e-171 607.1 403 71.7
FAN21G0985 Fragaria x ananassa HOM05D004400 ORTHO05D005479 1.0e-171 607.1 403 71.5
Lalb_Chr14g0365141 Lupinus albus HOM05D004400 ORTHO05D005479 1.0e-171 607.1 403 72.2
Nn2g14932 Nelumbo nucifera HOM05D004400 ORTHO05D005479 1.3e-171 606.7 403 71.5
Manes.01G181700 Manihot esculenta HOM05D004400 ORTHO05D005479 1.7e-171 606.3 403 71.7
FvH4_3g28090 Fragaria vesca HOM05D004400 ORTHO05D005479 2.2e-171 605.9 403 71.5
Os08g0502700 Oryza sativa ssp. japonica HOM05D004400 ORTHO05D005479 2.2e-171 605.9 402 72.4
THA.LOC104826484 Tarenaya hassleriana HOM05D004400 ORTHO05D005479 2.2e-171 605.9 403 72.5
Thecc.09G244100 Theobroma cacao HOM05D004400 ORTHO05D005479 2.2e-171 605.9 403 71.0
FAN25G1578 Fragaria x ananassa HOM05D004400 ORTHO05D005479 2.9e-171 605.5 403 71.2
Aa31sc61G60 Aethionema arabicum HOM05D004400 ORTHO05D005479 3.8e-171 605.1 403 72.5
COL.COLO4_07229 Corchorus olitorius HOM05D004400 ORTHO05D005479 3.8e-171 605.1 403 71.0
Gorai.009G074800 Gossypium raimondii HOM05D004400 ORTHO05D005479 3.8e-171 605.1 403 71.2
Duzib170G1108 Durio zibethinus HOM05D004400 ORTHO05D005479 5.0e-171 604.7 403 71.0
FAN16G1059 Fragaria x ananassa HOM05D004400 ORTHO05D005479 5.0e-171 604.7 403 71.5
unitig_8.g2992 Utricularia gibba HOM05D004400 ORTHO05D005479 5.0e-171 604.7 403 70.7
HPP92_001014 Vanilla planifolia HOM05D004400 ORTHO05D005479 6.5e-171 604.4 403 72.0
CAN.G484.7 Capsicum annuum HOM05D004400 ORTHO05D005479 8.5e-171 604.0 403 71.2
Gohir.A05G070800 Gossypium hirsutum HOM05D004400 ORTHO05D005479 8.5e-171 604.0 403 71.2
RcHm_v2.0_Chr5g0050781 Rosa chinensis HOM05D004400 ORTHO05D005479 8.5e-171 604.0 403 71.2
Sp3g26830 Schrenkiella parvula HOM05D004400 ORTHO05D005479 8.5e-171 604.0 403 72.5
CsaV3_1G043170 Cucumis sativus L. HOM05D004400 ORTHO05D005479 1.1e-170 603.6 403 71.5
Lalb_Chr17g0348031 Lupinus albus HOM05D004400 ORTHO05D005479 1.1e-170 603.6 403 72.0
Manes.02G141600 Manihot esculenta HOM05D004400 ORTHO05D005479 1.1e-170 603.6 403 71.2
Solyc12g099930.2 Solanum lycopersicum HOM05D004400 ORTHO05D005479 1.5e-170 603.2 403 71.5
Sopen12g034550 Solanum pennellii HOM05D004400 ORTHO05D005479 1.5e-170 603.2 403 71.5
ATR0721G062 Amborella trichopoda HOM05D004400 ORTHO05D005479 1.9e-170 602.8 403 70.2
Nitab4.5_0011805g0020 Nicotiana tabacum HOM05D004400 ORTHO05D005479 1.9e-170 602.8 403 71.5
CsaV3_6G039090 Cucumis sativus L. HOM05D004400 ORTHO05D005479 2.5e-170 602.4 403 71.2
Dinv36191 Davidia involucrata HOM05D004400 ORTHO05D005479 2.5e-170 602.4 403 70.7
Thhalv10022711m.g Eutrema salsugineum HOM05D004400 ORTHO05D005479 2.5e-170 602.4 403 72.2
Gohir.D05G073700 Gossypium hirsutum HOM05D004400 ORTHO05D005479 2.5e-170 602.4 403 71.0
PGR102G2835 Punica granatum HOM05D004400 ORTHO05D005479 2.5e-170 602.4 403 71.5
CARHR105160 Cardamine hirsuta HOM05D004400 ORTHO05D005479 3.2e-170 602.1 403 71.7
DCAR_002094 Daucus carota HOM05D004400 ORTHO05D005479 3.2e-170 602.1 403 71.2
Mapoly0066s0091 Marchantia polymorpha HOM05D004400 ORTHO05D005479 3.2e-170 602.1 402 71.6
BcaC04g23083 Brassica carinata HOM05D004400 ORTHO05D005479 4.2e-170 601.7 403 71.7
A09p10380 Brassica napus HOM05D004400 ORTHO05D005479 4.2e-170 601.7 403 71.7
BraA09t36682Z Brassica rapa HOM05D004400 ORTHO05D005479 4.2e-170 601.7 403 71.7
CANSAT64G2455 Cannabis sativa HOM05D004400 ORTHO05D005479 4.2e-170 601.7 403 71.2
CiPaw.13G152600 Carya illinoinensis HOM05D004400 ORTHO05D005479 4.2e-170 601.7 403 70.0
Gohir.D13G221100 Gossypium hirsutum HOM05D004400 ORTHO05D005479 4.2e-170 601.7 403 70.5
Gorai.013G252200 Gossypium raimondii HOM05D004400 ORTHO05D005479 4.2e-170 601.7 403 70.5
MD03G1168700 Malus domestica HOM05D004400 ORTHO05D005479 4.2e-170 601.7 403 70.2
C09p12320 Brassica napus HOM05D004400 ORTHO05D005479 5.5e-170 601.3 403 71.7
BolC9t54125H Brassica oleracea HOM05D004400 ORTHO05D005479 5.5e-170 601.3 403 71.7
PGSC0003DMG400004652 Solanum tuberosum HOM05D004400 ORTHO05D005479 5.5e-170 601.3 403 71.2
AUR62039836 Chenopodium quinoa HOM05D004400 ORTHO05D005479 7.2e-170 600.9 403 70.5
MD11G1194500 Malus domestica HOM05D004400 ORTHO05D005479 7.2e-170 600.9 403 71.0
Gohir.A13G217500 Gossypium hirsutum HOM05D004400 ORTHO05D005479 9.4e-170 600.5 403 70.7
QL01p017697 Quercus lobata HOM05D004400 ORTHO05D005479 9.4e-170 600.5 402 70.9
ClCG02G022970 Citrullus lanatus HOM05D004400 ORTHO05D005479 1.2e-169 600.1 412 70.9
Lj6g0016070 Lotus japonicus HOM05D004400 ORTHO05D005479 1.6e-169 599.7 403 70.2
Hma1.2p1_0922F.1_g236910 Hydrangea macrophylla HOM05D004400 ORTHO05D005479 2.1e-169 599.4 403 71.0
A03p44920 Brassica napus HOM05D004400 ORTHO05D005479 2.7e-169 599.0 403 71.5
BraA03t13629Z Brassica rapa HOM05D004400 ORTHO05D005479 2.7e-169 599.0 403 71.5
DCAR_029980 Daucus carota HOM05D004400 ORTHO05D005479 2.7e-169 599.0 403 70.5
Hma1.2p1_0115F.1_g056060 Hydrangea macrophylla HOM05D004400 ORTHO05D005479 2.7e-169 599.0 403 70.7
SEGI_24220 Sequoiadendron giganteum HOM05D004400 ORTHO05D005479 2.7e-169 599.0 403 71.0
Haze_23202 Corylus avellana HOM05D004400 ORTHO05D005479 3.6e-169 598.6 403 70.0
MBI13_g29527_MAGBIO Magnolia biondii HOM05D004400 ORTHO05D005479 4.7e-169 598.2 403 69.7
Carub.0003s2789 Capsella rubella HOM05D004400 ORTHO05D005479 6.1e-169 597.8 403 70.5
Cfa009835 Carpinus fangiana HOM05D004400 ORTHO05D005479 6.1e-169 597.8 403 70.0
AUR62000174 Chenopodium quinoa HOM05D004400 ORTHO05D004881 6.1e-169 597.8 403 70.0
TWI75G1130 Tripterygium wilfordii HOM05D004400 ORTHO05D005479 6.1e-169 597.8 403 70.5
BcaC01g03126 Brassica carinata HOM05D004400 ORTHO05D005479 8.0e-169 597.4 403 71.2
C03p55800 Brassica napus HOM05D004400 ORTHO05D005479 8.0e-169 597.4 403 71.2
BolC3t17861H Brassica oleracea HOM05D004400 ORTHO05D005479 8.0e-169 597.4 403 71.2
TAR623G1228 Trochodendron aralioides HOM05D004400 ORTHO05D005479 8.0e-169 597.4 403 70.5
AL3G45260 Arabidopsis lyrata HOM05D004400 ORTHO05D005479 1.0e-168 597.0 403 70.7
AT2G13360 Arabidopsis thaliana HOM05D004400 ORTHO05D005479 1.0e-168 597.0 403 70.5
MELO3C014568.2 Cucumis melo HOM05D004400 ORTHO05D005479 1.0e-168 597.0 418 69.6
Rhsim13G0215900 Rhododendron simsii HOM05D004400 ORTHO05D005479 1.4e-168 596.7 403 69.7
Duzib150G0360 Durio zibethinus HOM05D004400 ORTHO05D005479 1.8e-168 596.3 403 70.0
Oeu025899.1 Olea europaea HOM05D004400 ORTHO05D005479 1.8e-168 596.3 403 69.7
Glyma.08G302600 Glycine max HOM05D004400 ORTHO05D005479 3.0e-168 595.5 403 69.7
MSTRG.17628 Avicennia marina HOM05D004400 ORTHO05D005479 4.0e-168 595.1 403 70.0
BcaB08g34528 Brassica carinata HOM05D004400 ORTHO05D005479 4.0e-168 595.1 403 70.7
Lj3C181G6 Lonicera japonica HOM05D004400 ORTHO05D005479 4.0e-168 595.1 417 69.1
Ca_13793_v3 Cicer arietinum L. HOM05D004400 ORTHO05D005479 5.2e-168 594.7 403 70.0
Eucgr.B03720 Eucalyptus grandis HOM05D004400 ORTHO05D005479 5.2e-168 594.7 403 70.5
SGA_v2.0_scaffold3G01468 Striga asiatica HOM05D004400 ORTHO05D005479 5.2e-168 594.7 403 69.7
HanXRQChr12g0381201 Helianthus annuus HOM05D004400 ORTHO05D005479 6.8e-168 594.3 403 70.0
SalBow6G1637 Salvia bowleyana HOM05D004400 ORTHO05D005479 8.8e-168 594.0 403 70.0
Lj3A187G31 Lonicera japonica HOM05D004400 ORTHO05D005479 1.2e-167 593.6 417 68.8
TPR.G8487 Trifolium pratense HOM05D004400 ORTHO05D005479 1.2e-167 593.6 403 69.7
Glyma.18G116900 Glycine max HOM05D004400 ORTHO05D005479 1.5e-167 593.2 403 69.5
Potri.001G253300 Populus trichocarpa HOM05D004400 ORTHO05D005479 1.5e-167 593.2 403 70.0
Cpa.g.sc892.2 Carica papaya HOM05D004400 ORTHO05D005479 2.6e-167 592.4 403 69.7
CSS0001177 Camellia sinensis var. sinensis HOM05D004400 ORTHO05D005479 5.7e-167 591.3 403 69.5
CSS0015379 Camellia sinensis var. sinensis HOM05D004400 ORTHO05D005479 5.7e-167 591.3 403 69.5
ECA233G2606 Erigeron canadensis HOM05D004400 ORTHO05D005479 5.7e-167 591.3 403 69.0
Ciclev10015490m.g Citrus clementina HOM05D004400 ORTHO05D005479 7.5e-167 590.9 403 69.5
Sed0026623 Sechium edule HOM05D004400 ORTHO05D005479 9.8e-167 590.5 430 66.5
Atru.chr3.2806 Acer truncatum HOM05D004400 ORTHO05D005479 1.3e-166 590.1 403 69.5
Aqoxy2G00323 Aquilegia oxysepala HOM05D004400 ORTHO05D005479 1.3e-166 590.1 403 70.0
VMungo0540G1800 Vigna mungo HOM05D004400 ORTHO05D005479 1.3e-166 590.1 403 69.7
Lsat_1_v5_gn_5_64980 Lactuca sativa HOM05D004400 ORTHO05D005479 1.7e-166 589.7 403 69.7
Potri.009G047700 Populus trichocarpa HOM05D004400 ORTHO05D005479 3.7e-166 588.6 403 68.7
LjContig00049g0014500 Lotus japonicus HOM05D004400 ORTHO05D005479 6.3e-166 587.8 398 69.1
PSO384G2058 Papaver somniferum HOM05D004400 ORTHO05D005479 8.3e-166 587.4 403 69.7
PSO339G5023 Papaver somniferum HOM05D004400 ORTHO05D005479 1.1e-165 587.0 403 69.7
Phvul.006G029100 Phaseolus vulgaris HOM05D004400 ORTHO05D005479 1.1e-165 587.0 403 68.7
Nitab4.5_0001925g0250 Nicotiana tabacum HOM05D004400 ORTHO05D005479 1.8e-165 586.3 439 65.8
Psat4g095360 Pisum sativum HOM05D004400 ORTHO05D005479 1.8e-165 586.3 403 69.5
Hund21989 Selenicereus undatus HOM05D004400 ORTHO05D005479 1.8e-165 586.3 403 68.2
arahy.Tifrunner.gnm1.ann1.NTNX6Y Arachis hypogaea HOM05D004400 ORTHO05D005479 9.1e-165 583.9 403 70.5
Cc01_g05790 Coffea canephora HOM05D004400 ORTHO05D005479 1.6e-164 583.2 403 68.7
CSS0007609 Camellia sinensis var. sinensis HOM05D004400 ORTHO05D005479 2.0e-164 582.8 403 68.7
Actinidia16361 Actinidia chinensis HOM05D004400 ORTHO05D005479 2.7e-164 582.4 401 68.6
arahy.Tifrunner.gnm1.ann1.U6ZXMA Arachis hypogaea HOM05D004400 ORTHO05D005479 1.5e-162 576.6 420 67.6
Zm00001eb034260 Zea mays HOM05D004400 ORTHO05D005479 1.5e-162 576.6 403 68.5
EL10Ac4g10172 Beta vulgaris HOM05D004400 ORTHO05D005479 2.3e-160 569.3 403 68.0
SMO117G0208 Selaginella moellendorffii HOM05D004400 ORTHO05D005479 3.4e-159 565.5 403 66.5
Ca_06224_v3 Cicer arietinum L. HOM05D004400 ORTHO05D005479 4.4e-159 565.1 403 66.5
Hund07449 Selenicereus undatus HOM05D004400 ORTHO05D005479 5.7e-159 564.7 403 67.7
Medtr5g090070 Medicago truncatula HOM05D004400 ORTHO05D005479 3.1e-157 558.9 403 65.8
vmacro04009 Vaccinium macrocarpon HOM05D004400 ORTHO05D005479 2.0e-156 556.2 442 62.0
TPR.G19354 Trifolium pratense HOM05D004400 ORTHO05D005479 4.5e-156 555.1 403 65.3
Psat2g019120 Pisum sativum HOM05D004400 ORTHO05D005479 8.6e-155 550.8 403 65.0
Sabra09G0035000 Salix brachista HOM05D004400 ORTHO05D004881 4.3e-154 548.5 403 66.0
Sc09g0000960 Simmondsia chinensis HOM05D004400 ORTHO05D005479 1.2e-153 547.0 358 71.5
GSVIVG01037237001 Vitis vinifera HOM05D004400 ORTHO05D005479 1.0e-152 543.9 376 68.6
Medtr3g053890 Medicago truncatula HOM05D004400 ORTHO05D005479 9.8e-151 537.3 361 69.0
Sabra16G0154200 Salix brachista HOM05D004400 ORTHO05D004881 8.3e-150 534.3 403 64.0
Migut.N02365 Erythranthe guttata HOM05D004400 ORTHO05D005479 7.0e-149 531.2 361 70.4
CDE08G1189 Ceratophyllum demersum HOM05D005522 ORTHO05D007414 2.3e-144 516.2 403 64.8
Oeu061291.1 Olea europaea HOM05D004400 ORTHO05D005479 4.1e-141 505.4 341 71.3
TAR369G0837 Trochodendron aralioides HOM05D004400 ORTHO05D005479 6.6e-139 498.0 335 71.3
Peaxi162Scf00062g00919 Petunia axillaris HOM05D004400 ORTHO05D005479 7.8e-132 474.6 403 59.6
Cre01.g005150 Chlamydomonas reinhardtii HOM05D004400 ORTHO05D005479 2.4e-125 453.0 398 56.8
Dinv08771 Davidia involucrata HOM05D004400 ORTHO05D005479 2.1e-121 439.9 290 69.3
PRCOL_00005046 Prasinoderma coloniale HOM05D004400 ORTHO05D005479 8.1e-121 438.0 398 53.0
Medtr5g094410 Medicago truncatula HOM05D004400 ORTHO05D005479 2.1e-113 413.3 404 55.2
Sed0008818 Sechium edule HOM05D004400 ORTHO05D005479 2.9e-110 402.9 420 52.1
Medtr5g067370 Medicago truncatula HOM05D004400 ORTHO05D005479 5.4e-109 398.7 403 52.9
Zm00001eb034570 Zea mays HOM05D004400 ORTHO05D005479 2.0e-103 380.2 260 71.5
Pp3c10_5790 Physcomitrium patens HOM05D004400 ORTHO05D005479 8.2e-97 358.2 301 61.5
Psat5g194960 Pisum sativum HOM05D004400 ORTHO05D005479 3.3e-90 336.3 273 61.5
Zm00001eb034320 Zea mays HOM05D004400 ORTHO05D005479 4.8e-89 332.4 229 67.2
RcHm_v2.0_Chr2g0084601 Rosa chinensis HOM05D004400 ORTHO05D005479 1.1e-82 311.2 223 65.5
RcHm_v2.0_Chr2g0095031 Rosa chinensis HOM05D004400 ORTHO05D005479 1.3e-81 307.8 228 63.6
RcHm_v2.0_Chr5g0076081 Rosa chinensis HOM05D004400 ORTHO05D005479 1.4e-80 304.3 228 62.7
ClCG03G012880 Citrullus lanatus HOM05D004400 ORTHO05D005479 4.1e-64 249.6 167 65.9
Actinidia06950 Actinidia chinensis HOM05D004400 ORTHO05D005479 4.8e-57 226.1 160 70.6
Psat4g095320 Pisum sativum HOM05D004400 ORTHO05D005479 7.3e-37 159.1 115 70.4
Cfa022418 Carpinus fangiana HOM05D004400 ORTHO05D005479 1.4e-32 144.8 352 27.0
Cre06.g294650 Chlamydomonas reinhardtii HOM05D004400 ORTHO05D005479 1.7e-30 137.9 351 29.3
Ca_13794_v3 Cicer arietinum L. HOM05D004400 ORTHO05D004881 5.0e-22 109.8 73 69.9
CBR_g51244 Chara braunii HOM05D000019 ORTHO05D000353 2.1e-15 87.8 317 25.9
Actinidia06949 Actinidia chinensis HOM05D004400 ORTHO05D005479 1.2e-10 72.0 47 66.0
Ah.08g223290 Amaranthus hybridus HOM05D004400 ORTHO05D005479 1.2e-10 72.0 45 64.4
Pp3s34_610 Physcomitrium patens HOM05D000068 ORTHO05D011688 1.5e-10 71.6 319 25.4
Peaxi162Scf00234g00513 Petunia axillaris HOM05D004400 ORTHO05D306043 1.3e-06 58.5 70 48.6


User provided reference genes

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