Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c18_6570 Physcomitrium patens HOM05D004878 ORTHO05D006497 3.1e-92 341.7 156 100.0
SMO351G0334 Selaginella moellendorffii HOM05D004878 ORTHO05D006497 4.2e-17 92.0 184 37.5
Gohir.D05G147200 Gossypium hirsutum HOM05D004878 ORTHO05D006497 5.5e-17 91.7 184 34.8
Pp3c21_18140 Physcomitrium patens HOM05D004878 ORTHO05D006497 7.2e-17 91.3 176 37.5
CDE05G2830 Ceratophyllum demersum HOM05D004878 ORTHO05D006497 9.4e-17 90.9 186 34.9
Gohir.A05G144900 Gossypium hirsutum HOM05D004878 ORTHO05D006497 2.1e-16 89.7 182 34.1
Gorai.009G151200 Gossypium raimondii HOM05D004878 ORTHO05D006497 2.1e-16 89.7 185 34.1
Prupe.4G110600 Prunus persica HOM05D004878 ORTHO05D006497 2.7e-16 89.4 166 37.3
Lalb_Chr11g0072281 Lupinus albus HOM05D004878 ORTHO05D006497 3.6e-16 89.0 176 35.8
Gohir.A05G144800 Gossypium hirsutum HOM05D004878 ORTHO05D006497 6.1e-16 88.2 185 34.1
Psat1g023920 Pisum sativum HOM05D004878 ORTHO05D006497 6.1e-16 88.2 184 34.8
CANSAT35G1110 Cannabis sativa HOM05D004878 ORTHO05D006497 8.0e-16 87.8 186 34.4
Glyma.06G218300 Glycine max HOM05D004878 ORTHO05D006497 8.0e-16 87.8 184 34.8
Gohir.D05G147300 Gossypium hirsutum HOM05D004878 ORTHO05D006497 8.0e-16 87.8 185 34.1
Gorai.009G151300 Gossypium raimondii HOM05D004878 ORTHO05D006497 8.0e-16 87.8 185 34.1
Thecc.06G141500 Theobroma cacao HOM05D004878 ORTHO05D006497 8.0e-16 87.8 186 34.4
Lj6g0027572 Lotus japonicus HOM05D004878 ORTHO05D006497 1.8e-15 86.7 184 34.8
Mapoly0024s0023 Marchantia polymorpha HOM05D004878 ORTHO05D006497 1.8e-15 86.7 188 35.6
Zm00001eb207300 Zea mays HOM05D004878 ORTHO05D006497 1.8e-15 86.7 178 34.3
MBI01_g44876_MAGBIO Magnolia biondii HOM05D004878 ORTHO05D006497 2.3e-15 86.3 186 34.4
PSO675G3235 Papaver somniferum HOM05D004878 ORTHO05D006497 2.3e-15 86.3 184 35.9
Phvul.009G205700 Phaseolus vulgaris HOM05D004878 ORTHO05D006497 2.3e-15 86.3 184 34.2
Duzib235G0192 Durio zibethinus HOM05D004878 ORTHO05D006497 3.0e-15 85.9 177 33.9
VMungo1309G2006 Vigna mungo HOM05D004878 ORTHO05D006497 3.0e-15 85.9 184 34.2
arahy.Tifrunner.gnm1.ann1.6I23D0 Arachis hypogaea HOM05D004878 ORTHO05D006497 5.2e-15 85.1 184 34.8
COL.COLO4_30984 Corchorus olitorius HOM05D004878 ORTHO05D006497 5.2e-15 85.1 184 34.2
Rhsim13G0131200 Rhododendron simsii HOM05D004878 ORTHO05D006497 5.2e-15 85.1 182 33.0
Aqoxy3G04145 Aquilegia oxysepala HOM05D004878 ORTHO05D006497 6.7e-15 84.7 178 34.3
BcaC05g27149 Brassica carinata HOM05D004878 ORTHO05D006497 6.7e-15 84.7 184 33.7
C05p30360 Brassica napus HOM05D004878 ORTHO05D006497 6.7e-15 84.7 184 33.7
BolC5t31775H Brassica oleracea HOM05D004878 ORTHO05D006497 6.7e-15 84.7 184 33.7
Eucgr.E01881 Eucalyptus grandis HOM05D004878 ORTHO05D006497 6.7e-15 84.7 184 34.2
QL11p017966 Quercus lobata HOM05D004878 ORTHO05D006497 6.7e-15 84.7 184 34.8
Atru.chr10.492 Acer truncatum HOM05D004878 ORTHO05D006497 8.8e-15 84.3 186 33.9
MSTRG.16341 Avicennia marina HOM05D004878 ORTHO05D006497 8.8e-15 84.3 182 33.5
CsaV3_1G017150 Cucumis sativus L. HOM05D004878 ORTHO05D006497 8.8e-15 84.3 174 33.3
MELO3C025560.2 Cucumis melo HOM05D004878 ORTHO05D006497 1.1e-14 84.0 173 33.5
SEGI_01553 Sequoiadendron giganteum HOM05D004878 ORTHO05D006497 1.1e-14 84.0 177 35.0
TAR624G0003 Trochodendron aralioides HOM05D004878 ORTHO05D006497 1.1e-14 84.0 182 34.1
Aa31LG2G15140 Aethionema arabicum HOM05D004878 ORTHO05D006497 1.5e-14 83.6 184 33.7
arahy.Tifrunner.gnm1.ann1.RY21T0 Arachis hypogaea HOM05D004878 ORTHO05D006497 1.5e-14 83.6 184 34.2
Lj1A1144T48 Lonicera japonica HOM05D004878 ORTHO05D006497 1.5e-14 83.6 174 33.3
Medtr0151s0030 Medicago truncatula HOM05D004878 ORTHO05D006497 1.5e-14 83.6 184 33.2
Os02g0169900 Oryza sativa ssp. japonica HOM05D004878 ORTHO05D006497 1.5e-14 83.6 186 33.3
AL1G49290 Arabidopsis lyrata HOM05D004878 ORTHO05D006497 2.0e-14 83.2 186 32.8
BcaB07g32781 Brassica carinata HOM05D004878 ORTHO05D006497 2.0e-14 83.2 186 32.8
A09p35050 Brassica napus HOM05D004878 ORTHO05D006497 2.0e-14 83.2 186 32.8
BraA09t39036Z Brassica rapa HOM05D004878 ORTHO05D006497 2.0e-14 83.2 186 32.8
CSS0029949 Camellia sinensis var. sinensis HOM05D004878 ORTHO05D006497 2.0e-14 83.2 176 34.7
vmacro03511 Vaccinium macrocarpon HOM05D004878 ORTHO05D006497 2.0e-14 83.2 195 33.3
GSVIVG01012083001 Vitis vinifera HOM05D004878 ORTHO05D006497 2.0e-14 83.2 182 34.1
Carub.0001s2959 Capsella rubella HOM05D004878 ORTHO05D006497 2.6e-14 82.8 184 33.2
Actinidia33655 Actinidia chinensis HOM05D004878 ORTHO05D006497 3.3e-14 82.4 186 32.3
ATR0763G188 Amborella trichopoda HOM05D004878 ORTHO05D006497 3.3e-14 82.4 186 33.9
Cc09_g06230 Coffea canephora HOM05D004878 ORTHO05D006497 3.3e-14 82.4 189 31.7
Migut.M01973 Erythranthe guttata HOM05D004878 ORTHO05D006497 3.3e-14 82.4 182 33.0
PSO675G2265 Papaver somniferum HOM05D004878 ORTHO05D006497 3.3e-14 82.4 184 35.3
Ah.02g114390 Amaranthus hybridus HOM05D004878 ORTHO05D006497 4.4e-14 82.0 177 34.5
CARHR030660 Cardamine hirsuta HOM05D004878 ORTHO05D006497 4.4e-14 82.0 186 32.3
AUR62032164 Chenopodium quinoa HOM05D004878 ORTHO05D006497 4.4e-14 82.0 185 33.5
AT1G31190 Arabidopsis thaliana HOM05D004878 ORTHO05D006497 5.7e-14 81.6 184 33.2
AUR62036922 Chenopodium quinoa HOM05D004878 ORTHO05D006497 5.7e-14 81.6 185 33.5
Thhalv10007962m.g Eutrema salsugineum HOM05D004878 ORTHO05D006497 5.7e-14 81.6 186 32.3
Sp1g27010 Schrenkiella parvula HOM05D004878 ORTHO05D006497 5.7e-14 81.6 186 32.3
Sed0019791 Sechium edule HOM05D004878 ORTHO05D006497 5.7e-14 81.6 176 33.0
unitig_27.g24819 Utricularia gibba HOM05D004878 ORTHO05D006497 5.7e-14 81.6 178 33.1
Nn7g38129 Nelumbo nucifera HOM05D004878 ORTHO05D006497 7.4e-14 81.3 177 33.3
HPP92_028557 Vanilla planifolia HOM05D004878 ORTHO05D006497 7.4e-14 81.3 179 31.3
SalBow8G2261 Salvia bowleyana HOM05D004878 ORTHO05D006497 9.7e-14 80.9 186 32.3
THA.LOC104798550 Tarenaya hassleriana HOM05D004878 ORTHO05D006497 9.7e-14 80.9 184 32.6
Cfa000720 Carpinus fangiana HOM05D004878 ORTHO05D006497 1.3e-13 80.5 184 33.2
ECA246G0899 Erigeron canadensis HOM05D004878 ORTHO05D006497 1.3e-13 80.5 178 33.7
MD10G1234100 Malus domestica HOM05D004878 ORTHO05D006497 1.3e-13 80.5 186 33.3
TPR.G9524 Trifolium pratense HOM05D004878 ORTHO05D006497 1.3e-13 80.5 184 32.6
TWI63G1027 Tripterygium wilfordii HOM05D004878 ORTHO05D006497 1.3e-13 80.5 182 32.4
MD05G1253100 Malus domestica HOM05D004878 ORTHO05D006497 1.7e-13 80.1 178 33.1
Lsat_1_v5_gn_5_36260 Lactuca sativa HOM05D004878 ORTHO05D006497 2.2e-13 79.7 179 31.8
Ca_04469_v3 Cicer arietinum L. HOM05D004878 ORTHO05D006497 2.8e-13 79.3 186 32.3
Ciclev10015670m.g Citrus clementina HOM05D004878 ORTHO05D006497 2.8e-13 79.3 182 31.3
Sc10g0005320 Simmondsia chinensis HOM05D004878 ORTHO05D006497 3.7e-13 79.0 184 31.5
EL10Ac5g11219 Beta vulgaris HOM05D004878 ORTHO05D006497 4.8e-13 78.6 187 32.6
PGR042G0940 Punica granatum HOM05D004878 ORTHO05D006497 6.3e-13 78.2 183 31.7
CAN.G519.8 Capsicum annuum HOM05D004878 ORTHO05D006497 8.2e-13 77.8 176 31.8
DCAR_003786 Daucus carota HOM05D004878 ORTHO05D006497 8.2e-13 77.8 186 32.3
FAN16G2586 Fragaria x ananassa HOM05D004878 ORTHO05D006497 8.2e-13 77.8 186 32.3
FAN25G2275 Fragaria x ananassa HOM05D004878 ORTHO05D006497 8.2e-13 77.8 184 32.1
Peaxi162Scf00149g00811 Petunia axillaris HOM05D004878 ORTHO05D006497 8.2e-13 77.8 166 31.9
RcHm_v2.0_Chr5g0019961 Rosa chinensis HOM05D004878 ORTHO05D006497 8.2e-13 77.8 186 32.3
Nitab4.5_0002056g0080 Nicotiana tabacum HOM05D004878 ORTHO05D006497 1.1e-12 77.4 178 30.9
FvH4_3g12170 Fragaria vesca HOM05D004878 ORTHO05D006497 1.4e-12 77.0 182 31.3
HanXRQChr12g0378221 Helianthus annuus HOM05D004878 ORTHO05D006497 1.4e-12 77.0 186 32.3
Solyc02g069010.4 Solanum lycopersicum HOM05D004878 ORTHO05D006497 1.4e-12 77.0 176 31.2
Sopen02g018080 Solanum pennellii HOM05D004878 ORTHO05D006497 1.4e-12 77.0 176 31.2
Manes.16G059325 Manihot esculenta HOM05D004878 ORTHO05D006497 1.8e-12 76.6 189 31.7
Potri.015G120400 Populus trichocarpa HOM05D004878 ORTHO05D006497 1.8e-12 76.6 182 31.3
FAN21G2052 Fragaria x ananassa HOM05D004878 ORTHO05D006497 2.4e-12 76.3 179 32.4
AagrBONN_evm.TU.Sc2ySwM_228.275 Anthoceros agrestis HOM05D004878 ORTHO05D006497 3.1e-12 75.9 215 32.1
Thhalv10009483m.g Eutrema salsugineum HOM05D004878 ORTHO05D006497 5.3e-12 75.1 170 33.5
Potri.012G120492 Populus trichocarpa HOM05D004878 ORTHO05D006497 1.2e-11 73.9 182 30.8
Hund02535 Selenicereus undatus HOM05D004878 ORTHO05D006497 1.2e-11 73.9 195 30.3
Sabra12G0088600 Salix brachista HOM05D004878 ORTHO05D006497 2.0e-11 73.2 173 30.6
Sabra12G0091900 Salix brachista HOM05D004878 ORTHO05D006497 2.0e-11 73.2 173 30.6
CiPaw.09G078300 Carya illinoinensis HOM05D004878 ORTHO05D006497 3.5e-11 72.4 170 32.9
ClCG01G010320 Citrullus lanatus HOM05D004878 ORTHO05D006497 5.0e-10 68.6 211 27.0
Cpa.g.sc135.22 Carica papaya HOM05D004878 ORTHO05D006497 1.1e-09 67.4 165 31.5
CBR_g30341 Chara braunii HOM05D004878 ORTHO05D006497 1.2e-08 63.9 111 36.9
PRCOL_00002057 Prasinoderma coloniale HOM05D004878 ORTHO05D006497 1.6e-08 63.5 174 27.6
RcHm_v2.0_Chr5g0019951 Rosa chinensis HOM05D004878 ORTHO05D006497 8.0e-08 61.2 149 30.9
Hma1.2p1_0185F.1_g081360 Hydrangea macrophylla HOM05D004878 ORTHO05D006497 4.0e-07 58.9 106 34.9
SGA_v2.0_scaffold175G39366 Striga asiatica HOM05D004878 ORTHO05D006497 6.7e-07 58.2 112 35.7
Cre02.g109600 Chlamydomonas reinhardtii HOM05D004878 ORTHO05D006497 9.7e-06 54.3 177 26.0


User provided reference genes

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