Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c18_5510 Physcomitrium patens HOM05D004875 ORTHO05D005598 0.0e+00 1899.4 976 100.0
Mapoly0170s0019 Marchantia polymorpha HOM05D004875 ORTHO05D005598 9.2e-195 684.9 1009 39.8
AagrBONN_evm.TU.Sc2ySwM_228.3164 Anthoceros agrestis HOM05D004875 ORTHO05D005598 8.9e-182 641.7 1019 39.7
MBI15_g31180_MAGBIO Magnolia biondii HOM05D004875 ORTHO05D005598 3.4e-165 586.6 1025 37.3
Aqoxy1G01286 Aquilegia oxysepala HOM05D004875 ORTHO05D005598 4.5e-165 586.3 1026 36.7
HanXRQChr08g0228771 Helianthus annuus HOM05D004875 ORTHO05D005598 2.1e-162 577.4 1015 36.3
SEGI_14366 Sequoiadendron giganteum HOM05D004875 ORTHO05D005598 1.0e-161 575.1 989 36.6
Eucgr.B04004 Eucalyptus grandis HOM05D004875 ORTHO05D005598 1.9e-160 570.9 1020 35.0
ATR0594G111 Amborella trichopoda HOM05D004875 ORTHO05D005598 7.4e-160 568.9 1024 35.5
Lj6g0003221 Lotus japonicus HOM05D004875 ORTHO05D005598 1.1e-158 565.1 1027 36.0
HanXRQChr13g0386431 Helianthus annuus HOM05D004875 ORTHO05D005598 1.4e-158 564.7 1020 35.1
GSVIVG01024634001 Vitis vinifera HOM05D004875 ORTHO05D005598 2.0e-157 560.8 1006 35.4
TWI31G0826 Tripterygium wilfordii HOM05D004875 ORTHO05D005598 1.3e-156 558.1 1024 36.2
Sopen09g013270 Solanum pennellii HOM05D004875 ORTHO05D005598 2.9e-156 557.0 1025 35.3
COL.COLO4_11154 Corchorus olitorius HOM05D004875 ORTHO05D005598 4.9e-156 556.2 1029 36.0
ECA247G1423 Erigeron canadensis HOM05D004875 ORTHO05D005598 4.9e-156 556.2 1021 35.5
Ciclev10030286m.g Citrus clementina HOM05D004875 ORTHO05D005598 6.5e-156 555.8 1036 35.7
Gorai.009G113500 Gossypium raimondii HOM05D004875 ORTHO05D005598 1.1e-155 555.1 1025 36.6
Medtr3g465700 Medicago truncatula HOM05D004875 ORTHO05D005598 1.9e-155 554.3 1018 35.5
CSS0009670 Camellia sinensis var. sinensis HOM05D004875 ORTHO05D005598 2.5e-155 553.9 1020 34.9
CsaV3_6G015880 Cucumis sativus L. HOM05D004875 ORTHO05D005598 2.5e-155 553.9 1029 35.5
Prupe.6G048400 Prunus persica HOM05D004875 ORTHO05D005598 2.5e-155 553.9 990 36.3
TAR633G2039 Trochodendron aralioides HOM05D004875 ORTHO05D005598 4.2e-155 553.1 1020 35.1
CSS0036828 Camellia sinensis var. sinensis HOM05D004875 ORTHO05D005598 7.1e-155 552.4 1005 34.8
CiPaw.13G069200 Carya illinoinensis HOM05D004875 ORTHO05D005598 1.2e-154 551.6 1020 35.3
RcHm_v2.0_Chr5g0071641 Rosa chinensis HOM05D004875 ORTHO05D005598 1.2e-154 551.6 1023 34.1
arahy.Tifrunner.gnm1.ann1.7Z8DLY Arachis hypogaea HOM05D004875 ORTHO05D005598 2.1e-154 550.8 1025 35.0
QL01p026245 Quercus lobata HOM05D004875 ORTHO05D005598 4.6e-154 549.7 1019 34.7
Psat5g154480 Pisum sativum HOM05D004875 ORTHO05D005598 1.0e-153 548.5 1021 35.0
MSTRG.12688 Avicennia marina HOM05D004875 ORTHO05D005598 1.3e-153 548.1 1022 35.1
Hma1.2p1_1692F.1_g297880 Hydrangea macrophylla HOM05D004875 ORTHO05D005598 1.3e-153 548.1 1028 35.7
FAN11G0831 Fragaria x ananassa HOM05D004875 ORTHO05D005598 2.3e-153 547.4 1019 34.6
SalBow2G1321 Salvia bowleyana HOM05D004875 ORTHO05D005598 3.0e-153 547.0 1021 34.9
Sed0004894 Sechium edule HOM05D004875 ORTHO05D005598 3.9e-153 546.6 1012 37.0
arahy.Tifrunner.gnm1.ann1.LY55DJ Arachis hypogaea HOM05D004875 ORTHO05D005598 5.1e-153 546.2 1027 34.8
TPR.G25698 Trifolium pratense HOM05D004875 ORTHO05D005598 5.1e-153 546.2 1030 35.0
PGR102G0105 Punica granatum HOM05D004875 ORTHO05D005598 6.7e-153 545.8 1018 35.5
FvH4_3g39760 Fragaria vesca HOM05D004875 ORTHO05D005598 8.7e-153 545.4 1019 34.4
MD03G1056500 Malus domestica HOM05D004875 ORTHO05D005598 1.1e-152 545.0 1021 34.5
Thecc.09G357800 Theobroma cacao HOM05D004875 ORTHO05D005598 1.9e-152 544.3 1029 35.3
TWI79G1304 Tripterygium wilfordii HOM05D004875 ORTHO05D005598 1.9e-152 544.3 1025 35.8
DCAR_018231 Daucus carota HOM05D004875 ORTHO05D005598 2.5e-152 543.9 1024 33.8
vmacro02918 Vaccinium macrocarpon HOM05D004875 ORTHO05D005598 2.5e-152 543.9 1066 33.6
Lsat_1_v5_gn_9_14720 Lactuca sativa HOM05D004875 ORTHO05D005598 9.6e-152 542.0 1026 34.8
FAN21G2306 Fragaria x ananassa HOM05D004875 ORTHO05D005598 2.1e-151 540.8 1024 34.3
Glyma.11G163900 Glycine max HOM05D004875 ORTHO05D005598 2.1e-151 540.8 1029 34.8
VMungo0540G0701 Vigna mungo HOM05D004875 ORTHO05D005598 4.8e-151 539.7 1026 35.2
Phvul.006G074100 Phaseolus vulgaris HOM05D004875 ORTHO05D005598 6.2e-151 539.3 1026 35.2
Glyma.18G057100 Glycine max HOM05D004875 ORTHO05D005598 1.4e-150 538.1 1033 34.9
AUR62001870 Chenopodium quinoa HOM05D004875 ORTHO05D005598 1.8e-150 537.7 1017 34.4
FAN16G0994 Fragaria x ananassa HOM05D004875 ORTHO05D005598 1.8e-150 537.7 987 34.8
Lalb_Chr20g0114691 Lupinus albus HOM05D004875 ORTHO05D005598 1.8e-150 537.7 1022 34.3
MD11G1058300 Malus domestica HOM05D004875 ORTHO05D005598 2.4e-150 537.3 1021 34.4
FAN25G2145 Fragaria x ananassa HOM05D004875 ORTHO05D005598 3.1e-150 537.0 990 34.7
Manes.02G211800 Manihot esculenta HOM05D004875 ORTHO05D005598 5.3e-150 536.2 1025 34.3
Cfa011778 Carpinus fangiana HOM05D004875 ORTHO05D005598 6.9e-150 535.8 1021 34.5
Os05g0345400 Oryza sativa ssp. japonica HOM05D004875 ORTHO05D005598 9.0e-150 535.4 1017 33.9
SGA_v2.0_scaffold146G36120 Striga asiatica HOM05D004875 ORTHO05D005598 9.0e-150 535.4 1020 33.7
Carub.0008s1904 Capsella rubella HOM05D004875 ORTHO05D005598 2.0e-149 534.3 1029 34.1
Cc01_g14850 Coffea canephora HOM05D004875 ORTHO05D000053 2.0e-149 534.3 991 35.5
AUR62009668 Chenopodium quinoa HOM05D004875 ORTHO05D005598 2.6e-149 533.9 1017 34.4
CANSAT54G1540 Cannabis sativa HOM05D004875 ORTHO05D005598 4.5e-149 533.1 1031 34.8
Potri.013G152800 Populus trichocarpa HOM05D004875 ORTHO05D005598 5.8e-149 532.7 1022 33.8
HPP92_003240 Vanilla planifolia HOM05D004875 ORTHO05D005598 5.8e-149 532.7 1020 33.9
Actinidia23196 Actinidia chinensis HOM05D004875 ORTHO05D005598 2.2e-148 530.8 966 35.7
EL10Ac7g15921 Beta vulgaris HOM05D004875 ORTHO05D005598 2.9e-148 530.4 1012 34.7
CARHR272270 Cardamine hirsuta HOM05D004875 ORTHO05D005598 6.5e-148 529.3 1022 33.8
Ah.08g215110 Amaranthus hybridus HOM05D004875 ORTHO05D005598 1.4e-147 528.1 973 36.8
AT5G58450 Arabidopsis thaliana HOM05D004875 ORTHO05D005598 1.4e-147 528.1 1025 33.6
Sp6g20140 Schrenkiella parvula HOM05D004875 ORTHO05D005598 2.5e-147 527.3 1018 33.3
ClCG02G019240 Citrullus lanatus HOM05D004875 ORTHO05D005598 3.2e-147 526.9 1029 35.0
Rhsim13G0064100 Rhododendron simsii HOM05D004875 ORTHO05D005598 2.7e-146 523.9 1038 33.7
Haze_24411 Corylus avellana HOM05D004875 ORTHO05D005598 3.5e-146 523.5 1083 32.7
AL8G34640 Arabidopsis lyrata HOM05D004875 ORTHO05D005598 1.3e-145 521.5 1025 33.8
Gohir.D05G109200 Gossypium hirsutum HOM05D004875 ORTHO05D005598 2.3e-145 520.8 772 39.9
A10p15830 Brassica napus HOM05D004875 ORTHO05D005598 1.1e-144 518.5 1024 33.4
THA.LOC104799387 Tarenaya hassleriana HOM05D004875 ORTHO05D005598 1.1e-144 518.5 1023 32.8
BcaB08g36179 Brassica carinata HOM05D004875 ORTHO05D005598 3.3e-144 516.9 1024 34.0
BraA10t43642Z Brassica rapa HOM05D004875 ORTHO05D005598 2.2e-143 514.2 1023 33.0
Aa31LG11G230 Aethionema arabicum HOM05D004875 ORTHO05D005598 3.7e-143 513.5 1035 32.9
Nn2g11010 Nelumbo nucifera HOM05D004875 ORTHO05D005598 3.7e-143 513.5 767 39.1
Duzib168G1610 Durio zibethinus HOM05D004875 ORTHO05D005598 2.4e-142 510.8 1026 34.2
BcaC04g19867 Brassica carinata HOM05D004875 ORTHO05D005598 4.1e-142 510.0 1028 33.1
BolC9t57888H Brassica oleracea HOM05D004875 ORTHO05D005598 4.1e-142 510.0 1028 33.1
C09p50320 Brassica napus HOM05D004875 ORTHO05D005598 5.3e-142 509.6 1028 33.1
Sabra13G0122800 Salix brachista HOM05D004875 ORTHO05D005598 1.0e-140 505.4 1055 32.9
Hund05024 Selenicereus undatus HOM05D004875 ORTHO05D005598 3.2e-139 500.4 1011 33.6
Gohir.A05G109100 Gossypium hirsutum HOM05D004875 ORTHO05D005598 4.2e-139 500.0 772 39.6
Lj1C127G1 Lonicera japonica HOM05D004875 ORTHO05D005598 4.2e-139 500.0 1027 33.2
Migut.N00759 Erythranthe guttata HOM05D004875 ORTHO05D005598 2.3e-137 494.2 1019 33.0
Thhalv10012545m.g Eutrema salsugineum HOM05D004875 ORTHO05D005598 1.2e-133 481.9 682 39.1
CDE04G2228 Ceratophyllum demersum HOM05D004875 ORTHO05D005598 1.3e-132 478.4 987 32.8
Actinidia32610 Actinidia chinensis HOM05D004875 ORTHO05D005598 2.0e-125 454.5 611 41.7
Dinv09669 Davidia involucrata HOM05D004875 ORTHO05D005598 7.2e-123 446.0 607 41.8
PSO349G0337 Papaver somniferum HOM05D004875 ORTHO05D005598 1.6e-117 428.3 1037 30.9
PSO765G0012 Papaver somniferum HOM05D004875 ORTHO05D005598 7.2e-115 419.5 1039 30.4
CBR_g50477 Chara braunii HOM05D004875 ORTHO05D005598 1.2e-114 418.7 1168 27.4
Zm00001eb286340 Zea mays HOM05D004875 ORTHO05D005598 5.0e-100 370.2 889 30.0
Solyc09g057910.3 Solanum lycopersicum HOM05D004875 ORTHO05D005598 6.6e-100 369.8 519 40.8
CDE07G1129 Ceratophyllum demersum HOM05D004875 ORTHO05D005598 4.7e-98 363.6 1012 28.7
Peaxi162Scf00055g01011 Petunia axillaris HOM05D004875 ORTHO05D005598 1.4e-97 362.1 552 38.4
Nitab4.5_0000002g0030 Nicotiana tabacum HOM05D004875 ORTHO05D005598 7.0e-86 323.2 512 38.5
Atru.chr3.4118 Acer truncatum HOM05D004875 ORTHO05D005598 2.7e-85 321.2 458 41.9
Sc12g0001970 Simmondsia chinensis HOM05D004875 ORTHO05D005598 8.1e-82 309.7 799 28.5
Cpa.g.sc2.355 Carica papaya HOM05D004875 ORTHO05D005598 1.5e-80 305.4 394 45.7
Ca_15009_v3 Cicer arietinum L. HOM05D004875 ORTHO05D005598 5.4e-78 297.0 769 28.3
Nitab4.5_0005130g0040 Nicotiana tabacum HOM05D004875 ORTHO05D005598 2.8e-74 284.6 582 33.3
Sc12g0001960 Simmondsia chinensis HOM05D004875 ORTHO05D005598 5.2e-65 253.8 229 59.8
MELO3C025695.2 Cucumis melo HOM05D004875 ORTHO05D005598 7.6e-64 250.0 231 55.0
Oeu019275.2 Olea europaea HOM05D004875 ORTHO05D005598 6.0e-61 240.4 259 49.8
Cpa.g.sc2.356 Carica papaya HOM05D004875 ORTHO05D005598 6.4e-55 220.3 592 30.1
Atru.chr3.4119 Acer truncatum HOM05D004875 ORTHO05D005598 1.4e-54 219.2 425 34.4
Solyc09g057920.3 Solanum lycopersicum HOM05D004875 ORTHO05D005598 2.6e-48 198.4 521 29.8
Peaxi162Scf00055g00107 Petunia axillaris HOM05D004875 ORTHO05D005598 1.7e-47 195.7 515 28.7
PRCOL_00002473 Prasinoderma coloniale HOM05D004875 ORTHO05D005598 5.1e-44 184.1 690 27.8
MCO11G770 Micromonas commoda HOM05D004875 ORTHO05D005598 4.3e-43 181.0 750 24.8
Oeu027574.2 Olea europaea HOM05D004875 ORTHO05D005598 1.0e-39 169.9 460 27.8
SHI19214 Sapria himalayana HOM05D004875 ORTHO05D005598 1.0e-39 169.9 566 26.1
Cre11.g475050 Chlamydomonas reinhardtii HOM05D004875 ORTHO05D005598 4.8e-34 151.0 795 24.0
unitig_0.g437 Utricularia gibba HOM05D004875 ORTHO05D005598 1.3e-31 142.9 156 44.2
PSO532G0016 Papaver somniferum HOM05D004875 ORTHO05D005598 2.7e-29 135.2 304 32.6
PSO541G1704 Papaver somniferum HOM05D004875 ORTHO05D005598 3.0e-28 131.7 256 33.2
MELO3C027117.2 Cucumis melo HOM05D004875 ORTHO05D005598 1.1e-27 129.8 309 29.1
CAN.G3.44 Capsicum annuum HOM05D004875 ORTHO05D005598 3.7e-26 124.8 109 58.7
MELO3C025696.2 Cucumis melo HOM05D004875 ORTHO05D005598 1.4e-25 122.9 434 28.3
PSO541G6542 Papaver somniferum HOM05D004875 ORTHO05D005598 2.4e-25 122.1 257 34.2
PSO478G4214 Papaver somniferum HOM05D004875 ORTHO05D005598 2.6e-24 118.6 225 34.7
C04p28250 Brassica napus HOM05D004875 ORTHO05D005598 3.8e-23 114.8 144 43.8
BolC4t24370H Brassica oleracea HOM05D004875 ORTHO05D005598 3.8e-23 114.8 144 43.8
SMO117G0137 Selaginella moellendorffii HOM05D004875 ORTHO05D005598 2.8e-18 98.6 83 57.8
unitig_0.g436 Utricularia gibba HOM05D004875 ORTHO05D005598 6.3e-18 97.4 379 24.3
SHI19217 Sapria himalayana HOM05D004875 ORTHO05D005598 4.5e-16 91.3 170 38.2
PSO170G5144 Papaver somniferum HOM05D004875 ORTHO05D005598 5.9e-16 90.9 363 24.5
PSO339G3761 Papaver somniferum HOM05D004875 ORTHO05D005598 1.0e-15 90.1 395 24.6
BcaC02g10491 Brassica carinata HOM05D004875 ORTHO05D005598 8.5e-15 87.0 116 44.8
C01p15940 Brassica napus HOM05D004875 ORTHO05D005598 4.2e-14 84.7 69 59.4
PSO541G5558 Papaver somniferum HOM05D004875 ORTHO05D005598 5.5e-14 84.3 247 28.3
BcaC07g37054 Brassica carinata HOM05D004875 ORTHO05D005598 6.7e-12 77.4 119 43.7
PSO384G1619 Papaver somniferum HOM05D004875 ORTHO05D005598 6.7e-12 77.4 296 24.7
BolC8t47222H Brassica oleracea HOM05D004875 ORTHO05D005598 1.8e-09 69.3 60 56.7
SHI19216 Sapria himalayana HOM05D004875 ORTHO05D005598 4.1e-09 68.2 68 47.1
SEGI_36322 Sequoiadendron giganteum HOM05D004875 ORTHO05D005598 2.2e-07 62.4 44 61.4
PGSC0003DMG400004010 Solanum tuberosum HOM05D004875 ORTHO05D005598 6.5e-07 60.8 62 48.4
SHI19218 Sapria himalayana HOM05D004875 ORTHO05D005598 2.5e-06 58.9 43 53.5


User provided reference genes

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