Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c18_5220 Physcomitrium patens HOM05D003958 ORTHO05D004864 3.2e-195 684.9 338 100.0
AagrBONN_evm.TU.Sc2ySwM_344.690 Anthoceros agrestis HOM05D003958 ORTHO05D004864 1.1e-107 394.0 322 61.8
SMO361G0280 Selaginella moellendorffii HOM05D003958 ORTHO05D004864 4.0e-105 385.6 318 64.8
SMO361G0823 Selaginella moellendorffii HOM05D003958 ORTHO05D004864 2.0e-104 383.3 321 63.9
SEGI_01237 Sequoiadendron giganteum HOM05D003958 ORTHO05D004864 8.3e-103 377.9 336 57.4
Haze_14701 Corylus avellana HOM05D003958 ORTHO05D004864 1.1e-102 377.5 335 59.4
Sopen02g031390 Solanum pennellii HOM05D003958 ORTHO05D004864 3.2e-102 375.9 332 59.6
arahy.Tifrunner.gnm1.ann1.38SPRB Arachis hypogaea HOM05D003958 ORTHO05D004864 4.1e-102 375.6 332 59.0
ATR0057G029 Amborella trichopoda HOM05D003958 ORTHO05D004864 7.1e-102 374.8 335 59.7
CANSAT64G0951 Cannabis sativa HOM05D003958 ORTHO05D004864 7.1e-102 374.8 332 59.6
Ca_00876_v3 Cicer arietinum L. HOM05D003958 ORTHO05D004864 7.1e-102 374.8 332 59.6
Lsat_1_v5_gn_4_183181 Lactuca sativa HOM05D003958 ORTHO05D004864 9.2e-102 374.4 332 60.5
PGSC0003DMG400000483 Solanum tuberosum HOM05D003958 ORTHO05D004864 9.2e-102 374.4 332 59.6
CSS0020788 Camellia sinensis var. sinensis HOM05D003958 ORTHO05D004864 2.1e-101 373.2 332 59.0
CSS0020854 Camellia sinensis var. sinensis HOM05D003958 ORTHO05D004864 2.1e-101 373.2 332 59.0
Phvul.011G172200 Phaseolus vulgaris HOM05D003958 ORTHO05D004864 2.1e-101 373.2 333 60.4
arahy.Tifrunner.gnm1.ann1.CB8F3G Arachis hypogaea HOM05D003958 ORTHO05D004864 3.5e-101 372.5 332 58.7
Psat1g092800 Pisum sativum HOM05D003958 ORTHO05D004864 4.6e-101 372.1 332 60.2
CiPaw.03G040700 Carya illinoinensis HOM05D003958 ORTHO05D004864 6.0e-101 371.7 332 59.6
Hund02774 Selenicereus undatus HOM05D003958 ORTHO05D004864 6.0e-101 371.7 336 59.2
CiPaw.04G026700 Carya illinoinensis HOM05D003958 ORTHO05D004864 7.8e-101 371.3 332 59.0
DCAR_009028 Daucus carota HOM05D003958 ORTHO05D004864 7.8e-101 371.3 333 59.8
ECA232G3491 Erigeron canadensis HOM05D003958 ORTHO05D004864 7.8e-101 371.3 332 60.5
Nn7g37719 Nelumbo nucifera HOM05D003958 ORTHO05D004864 1.0e-100 370.9 333 59.5
CAN.G206.10 Capsicum annuum HOM05D003958 ORTHO05D004864 1.7e-100 370.2 332 59.6
Peaxi162Scf00129g01325 Petunia axillaris HOM05D003958 ORTHO05D004864 1.7e-100 370.2 320 60.6
Lj3g0001252 Lotus japonicus HOM05D003958 ORTHO05D004864 2.3e-100 369.8 332 60.2
Mapoly0053s0094 Marchantia polymorpha HOM05D003958 ORTHO05D004864 2.3e-100 369.8 351 55.8
Duzib147G0566 Durio zibethinus HOM05D003958 ORTHO05D004864 3.9e-100 369.0 332 59.3
Duzib147G0897 Durio zibethinus HOM05D003958 ORTHO05D004864 3.9e-100 369.0 333 59.2
QL02p075632 Quercus lobata HOM05D003958 ORTHO05D004864 3.9e-100 369.0 332 58.4
TPR.G33516 Trifolium pratense HOM05D003958 ORTHO05D004864 3.9e-100 369.0 332 59.9
Cc02_g12190 Coffea canephora HOM05D003958 ORTHO05D004864 5.1e-100 368.6 332 58.7
Nitab4.5_0008215g0010 Nicotiana tabacum HOM05D003958 ORTHO05D004864 5.1e-100 368.6 319 59.9
Thecc.04G013700 Theobroma cacao HOM05D003958 ORTHO05D004864 5.1e-100 368.6 333 59.8
Glyma.15G078000 Glycine max HOM05D003958 ORTHO05D004864 6.6e-100 368.2 332 59.3
HanXRQChr09g0255001 Helianthus annuus HOM05D003958 ORTHO05D004864 6.6e-100 368.2 334 59.0
Carub.0006s1277 Capsella rubella HOM05D003958 ORTHO05D004864 8.6e-100 367.9 331 59.2
Ciclev10016011m.g Citrus clementina HOM05D003958 ORTHO05D004864 8.6e-100 367.9 332 59.3
MBI05_g22036_MAGBIO Magnolia biondii HOM05D003958 ORTHO05D004864 8.6e-100 367.9 332 58.4
PGR054G0003 Punica granatum HOM05D003958 ORTHO05D004864 8.6e-100 367.9 332 57.8
TAR622G1043 Trochodendron aralioides HOM05D003958 ORTHO05D004864 8.6e-100 367.9 332 59.6
Aqoxy3G00906 Aquilegia oxysepala HOM05D003958 ORTHO05D004864 1.1e-99 367.5 334 60.2
Nitab4.5_0002739g0040 Nicotiana tabacum HOM05D003958 ORTHO05D004864 1.1e-99 367.5 319 60.8
VMungo0540G0822 Vigna mungo HOM05D003958 ORTHO05D004864 1.1e-99 367.5 336 58.3
Duzib147G0735 Durio zibethinus HOM05D003958 ORTHO05D004864 1.5e-99 367.1 332 58.7
Gorai.006G031600 Gossypium raimondii HOM05D003958 ORTHO05D004864 1.5e-99 367.1 333 58.3
Medtr6g047800 Medicago truncatula HOM05D003958 ORTHO05D004864 1.5e-99 367.1 332 59.6
RcHm_v2.0_Chr2g0172551 Rosa chinensis HOM05D003958 ORTHO05D004864 1.5e-99 367.1 332 60.8
Phvul.006G181700 Phaseolus vulgaris HOM05D003958 ORTHO05D004864 1.9e-99 366.7 335 59.4
AT5G14600 Arabidopsis thaliana HOM05D003958 ORTHO05D004864 2.5e-99 366.3 331 58.3
PGR119G1149 Punica granatum HOM05D003958 ORTHO05D004864 2.5e-99 366.3 332 57.8
CARHR198720 Cardamine hirsuta HOM05D003958 ORTHO05D004864 3.3e-99 365.9 331 59.2
Aqoxy2G00425 Aquilegia oxysepala HOM05D003958 ORTHO05D004864 4.3e-99 365.5 319 63.3
CDE06G0036 Ceratophyllum demersum HOM05D003958 ORTHO05D004864 4.3e-99 365.5 332 58.4
Glyma.13G234900 Glycine max HOM05D003958 ORTHO05D004864 4.3e-99 365.5 332 59.9
FvH4_6g51011 Fragaria vesca HOM05D003958 ORTHO05D004864 5.6e-99 365.2 332 59.6
Gohir.D13G007800 Gossypium hirsutum HOM05D003958 ORTHO05D004864 5.6e-99 365.2 335 57.9
THA.LOC104802398 Tarenaya hassleriana HOM05D003958 ORTHO05D004864 5.6e-99 365.2 332 58.4
Migut.H00096 Erythranthe guttata HOM05D003958 ORTHO05D004864 7.3e-99 364.8 332 58.1
Eucgr.I01766 Eucalyptus grandis HOM05D003958 ORTHO05D004864 9.5e-99 364.4 332 58.1
Gohir.D09G027100 Gossypium hirsutum HOM05D003958 ORTHO05D004864 9.5e-99 364.4 333 58.0
C09p62510 Brassica napus HOM05D003958 ORTHO05D004864 1.2e-98 364.0 332 58.7
Gohir.A09G027800 Gossypium hirsutum HOM05D003958 ORTHO05D004864 1.2e-98 364.0 333 58.0
Lj7A595G65 Lonicera japonica HOM05D003958 ORTHO05D004864 1.2e-98 364.0 332 58.7
Atru.chr6.2341 Acer truncatum HOM05D003958 ORTHO05D004864 1.6e-98 363.6 332 58.7
AL6G25360 Arabidopsis lyrata HOM05D003958 ORTHO05D004864 1.6e-98 363.6 331 58.0
COL.COLO4_29053 Corchorus olitorius HOM05D003958 ORTHO05D004864 1.6e-98 363.6 332 59.0
vmacro18265 Vaccinium macrocarpon HOM05D003958 ORTHO05D004864 2.8e-98 362.8 349 57.0
Aa31LG11G15350 Aethionema arabicum HOM05D003958 ORTHO05D004864 3.6e-98 362.5 331 58.6
Manes.17G113700 Manihot esculenta HOM05D003958 ORTHO05D004864 3.6e-98 362.5 332 57.5
Sed0009763 Sechium edule HOM05D003958 ORTHO05D004864 3.6e-98 362.5 332 57.8
PSO063G1059 Papaver somniferum HOM05D003958 ORTHO05D004864 4.7e-98 362.1 332 58.1
BraA10t44467Z Brassica rapa HOM05D003958 ORTHO05D004864 6.2e-98 361.7 332 58.4
ClCG01G008920 Citrullus lanatus HOM05D003958 ORTHO05D004864 6.2e-98 361.7 331 58.6
TWI12G0059 Tripterygium wilfordii HOM05D003958 ORTHO05D004864 6.2e-98 361.7 332 58.4
A10p24040 Brassica napus HOM05D003958 ORTHO05D004864 8.1e-98 361.3 331 58.0
Sp6g29430 Schrenkiella parvula HOM05D003958 ORTHO05D004864 1.4e-97 360.5 331 57.4
BolC9t59091H Brassica oleracea HOM05D003958 ORTHO05D004864 2.3e-97 359.8 332 58.1
MSTRG.3157 Avicennia marina HOM05D003958 ORTHO05D004864 3.1e-97 359.4 332 60.5
THA.LOC104821089 Tarenaya hassleriana HOM05D003958 ORTHO05D004864 3.1e-97 359.4 338 57.4
PSO832G3613 Papaver somniferum HOM05D003958 ORTHO05D004864 4.0e-97 359.0 332 57.8
TPR.G11724 Trifolium pratense HOM05D003958 ORTHO05D004864 6.8e-97 358.2 335 56.4
Zm00001eb071120 Zea mays HOM05D003958 ORTHO05D004864 6.8e-97 358.2 345 56.8
Potri.018G120500 Populus trichocarpa HOM05D003958 ORTHO05D004864 8.9e-97 357.8 335 58.2
CsaV3_1G037790 Cucumis sativus L. HOM05D003958 ORTHO05D004864 1.5e-96 357.1 331 58.3
Thhalv10014133m.g Eutrema salsugineum HOM05D003958 ORTHO05D004864 1.5e-96 357.1 331 56.8
MELO3C021808.2 Cucumis melo HOM05D003958 ORTHO05D004864 2.6e-96 356.3 320 59.1
Lj2g0025561 Lotus japonicus HOM05D003958 ORTHO05D004864 2.6e-96 356.3 332 58.7
Prupe.3G287900 Prunus persica HOM05D003958 ORTHO05D004864 3.4e-96 355.9 332 57.8
EL10Ac9g21169 Beta vulgaris HOM05D003958 ORTHO05D004864 4.4e-96 355.5 317 59.3
Lalb_Chr03g0031671 Lupinus albus HOM05D003958 ORTHO05D004864 4.4e-96 355.5 334 57.5
Ca_00369_v3 Cicer arietinum L. HOM05D003958 ORTHO05D004864 5.8e-96 355.1 332 57.2
Cfa007405 Carpinus fangiana HOM05D003958 ORTHO05D004864 7.6e-96 354.8 250 68.0
Oeu057051.1 Olea europaea HOM05D003958 ORTHO05D004864 9.9e-96 354.4 332 56.3
Sabra18G0100500 Salix brachista HOM05D003958 ORTHO05D004864 1.7e-95 353.6 317 59.9
Lju41A38T12 Lonicera japonica HOM05D003958 ORTHO05D004864 2.2e-95 353.2 317 60.9
Sabra18G0099100 Salix brachista HOM05D003958 ORTHO05D004864 2.9e-95 352.8 317 59.6
Sabra18G0098500 Salix brachista HOM05D003958 ORTHO05D004864 4.9e-95 352.1 317 59.0
BcaNung03113 Brassica carinata HOM05D003958 ORTHO05D004864 6.4e-95 351.7 331 56.2
Psat1g202680 Pisum sativum HOM05D003958 ORTHO05D004864 4.1e-94 349.0 332 57.2
AUR62002487 Chenopodium quinoa HOM05D003958 ORTHO05D004864 5.4e-94 348.6 352 54.5
AUR62023705 Chenopodium quinoa HOM05D003958 ORTHO05D004864 5.4e-94 348.6 325 57.8
Os04g0319600 Oryza sativa ssp. japonica HOM05D003958 ORTHO05D004864 2.7e-93 346.3 346 54.0
Cpa.g.sc108.31 Carica papaya HOM05D003958 ORTHO05D004864 1.7e-92 343.6 320 58.4
FAN14G0618 Fragaria x ananassa HOM05D003958 ORTHO05D004864 1.7e-92 343.6 260 66.5
Sc03g0007660 Simmondsia chinensis HOM05D003958 ORTHO05D004864 2.3e-92 343.2 330 56.1
SGA_v2.0_scaffold196G40937 Striga asiatica HOM05D003958 ORTHO05D004864 2.3e-92 343.2 334 56.3
CBR_g9110 Chara braunii HOM05D003958 ORTHO05D004864 3.9e-92 342.4 383 50.9
MD09G1029500 Malus domestica HOM05D003958 ORTHO05D004864 2.8e-90 336.3 302 60.3
Sabra18G0101000 Salix brachista HOM05D003958 ORTHO05D004864 3.6e-90 335.9 302 59.6
FAN09G1134 Fragaria x ananassa HOM05D003958 ORTHO05D004864 6.2e-90 335.1 248 67.3
BcaC03g13470 Brassica carinata HOM05D003958 ORTHO05D004864 2.1e-85 320.1 331 53.2
HPP92_013732 Vanilla planifolia HOM05D003958 ORTHO05D004864 7.8e-85 318.2 230 65.2
MD17G1031500 Malus domestica HOM05D003958 ORTHO05D004864 3.9e-84 315.8 222 70.3
Sabra18G0098900 Salix brachista HOM05D003958 ORTHO05D004864 1.3e-82 310.8 282 59.2
MCO10G191 Micromonas commoda HOM05D003958 ORTHO05D004864 6.2e-82 308.5 331 50.5
Hma1.2p1_0858F.1_g229230 Hydrangea macrophylla HOM05D003958 ORTHO05D004864 1.4e-81 307.4 355 50.7
Cre05.g244236 Chlamydomonas reinhardtii HOM05D003958 ORTHO05D004864 3.2e-78 296.2 269 57.2
Gorai.013G008200 Gossypium raimondii HOM05D003958 ORTHO05D004864 1.2e-77 294.3 335 49.6
arahy.Tifrunner.gnm1.ann1.8Z0BSJ Arachis hypogaea HOM05D003958 ORTHO05D004864 2.7e-77 293.1 335 50.4
Medtr2g014590 Medicago truncatula HOM05D003958 ORTHO05D004864 1.1e-75 287.7 215 64.2
PRCOL_00006622 Prasinoderma coloniale HOM05D003958 ORTHO05D004864 5.3e-73 278.9 359 45.7
CSS0027303 Camellia sinensis var. sinensis HOM05D003958 ORTHO05D004864 1.9e-70 270.4 332 49.4
arahy.Tifrunner.gnm1.ann1.Z5MU8N Arachis hypogaea HOM05D003958 ORTHO05D004864 4.2e-70 269.2 205 65.4
arahy.Tifrunner.gnm1.ann1.M5ZQAR Arachis hypogaea HOM05D003958 ORTHO05D004864 1.8e-68 263.8 223 60.5
Dinv35088 Davidia involucrata HOM05D003958 ORTHO05D004864 1.2e-61 241.1 294 50.3
unitig_62.g23558 Utricularia gibba HOM05D003958 ORTHO05D004864 5.7e-59 232.3 229 56.8
SGA_v2.0_scaffold34G13865 Striga asiatica HOM05D003958 ORTHO05D004864 7.6e-56 221.9 355 40.8
Atru.chr6.2249 Acer truncatum HOM05D003958 ORTHO05D004864 1.9e-54 217.2 163 65.6
GSVIVG01032441001 Vitis vinifera HOM05D000462 ORTHO05D002607 2.1e-53 213.8 152 69.7
arahy.Tifrunner.gnm1.ann1.FV4QAS Arachis hypogaea HOM05D003958 ORTHO05D004864 1.1e-51 208.0 171 63.2
Ah.07g203270 Amaranthus hybridus HOM05D003958 ORTHO05D004864 4.1e-49 199.5 151 68.2
Haze_26162 Corylus avellana HOM05D003958 ORTHO05D004864 7.7e-48 195.3 251 43.4
Gohir.A10G243400 Gossypium hirsutum HOM05D003958 ORTHO05D004864 1.3e-42 177.9 128 68.8
Eucgr.L02705 Eucalyptus grandis HOM05D003958 ORTHO05D004864 6.3e-42 175.6 193 51.8
Ah.07g203280 Amaranthus hybridus HOM05D003958 ORTHO05D004864 2.4e-41 173.7 184 52.7
Gohir.A03G000004 Gossypium hirsutum HOM05D003958 ORTHO05D004864 4.7e-37 159.5 113 69.9
Sopen06g018800 Solanum pennellii HOM05D003958 ORTHO05D004864 1.5e-35 154.5 132 61.4
Gohir.A01G232100 Gossypium hirsutum HOM05D003958 ORTHO05D004864 9.1e-33 145.2 110 63.6
Gohir.D11G349300 Gossypium hirsutum HOM05D003958 ORTHO05D004864 3.5e-32 143.3 122 58.2
Gohir.A06G000101 Gossypium hirsutum HOM05D003958 ORTHO05D004864 4.5e-32 142.9 91 76.9
Gorai.004G293900 Gossypium raimondii HOM05D003958 ORTHO05D004864 4.5e-32 142.9 122 58.2
Gorai.006G274500 Gossypium raimondii HOM05D003958 ORTHO05D004864 4.5e-32 142.9 122 58.2
Gorai.007G380200 Gossypium raimondii HOM05D003958 ORTHO05D004864 4.5e-32 142.9 110 62.7
Gohir.D08G275428 Gossypium hirsutum HOM05D003958 ORTHO05D004864 1.7e-31 141.0 122 57.4
BcaC01g04875 Brassica carinata HOM05D003958 ORTHO05D004864 2.2e-31 140.6 175 45.7
Gohir.D09G250100 Gossypium hirsutum HOM05D003958 ORTHO05D004864 2.2e-31 140.6 110 63.6
Gohir.D01G222101 Gossypium hirsutum HOM05D003958 ORTHO05D004864 8.5e-31 138.7 110 62.7
Gorai.N017600 Gossypium raimondii HOM05D003958 ORTHO05D004864 1.1e-30 138.3 119 57.1
Gohir.D03G178200 Gossypium hirsutum HOM05D003958 ORTHO05D004864 1.5e-30 137.9 110 60.9
Gohir.A12G000201 Gossypium hirsutum HOM05D003958 ORTHO05D004864 6.7e-28 129.0 262 36.3
FAN14G4368 Fragaria x ananassa HOM05D000001 ORTHO05D000003 9.7e-27 125.2 196 43.4
Gohir.1Z049515 Gossypium hirsutum HOM05D003958 ORTHO05D015143 3.1e-25 120.2 94 61.7
Gorai.006G275300 Gossypium raimondii HOM05D003958 ORTHO05D015143 1.2e-24 118.2 94 59.6
C03p32750 Brassica napus HOM05D003958 ORTHO05D004864 8.5e-23 112.1 91 58.2
BolC3t15610H Brassica oleracea HOM05D003958 ORTHO05D004864 8.5e-23 112.1 91 58.2
Atru.chr6.2248 Acer truncatum HOM05D003958 ORTHO05D004864 6.8e-20 102.4 72 66.7
Gorai.001G000100 Gossypium raimondii HOM05D003958 ORTHO05D004864 4.4e-19 99.8 81 59.3
Gohir.A09G249500 Gossypium hirsutum HOM05D003958 ORTHO05D004864 7.5e-19 99.0 63 76.2
Gohir.1Z049410 Gossypium hirsutum HOM05D003958 ORTHO05D004864 3.1e-17 93.6 63 73.0
FAN05G2568 Fragaria x ananassa HOM05D003958 ORTHO05D004864 4.1e-17 93.2 73 60.3
CSS0019434 Camellia sinensis var. sinensis HOM05D003958 ORTHO05D004864 6.5e-15 85.9 74 63.5
Gohir.1Z049564 Gossypium hirsutum HOM05D003958 ORTHO05D004864 1.8e-12 77.8 49 71.4
Gohir.1Z049570 Gossypium hirsutum HOM05D003958 ORTHO05D005872 1.8e-12 77.8 49 71.4
Gohir.D08G275100 Gossypium hirsutum HOM05D003958 ORTHO05D005872 1.8e-12 77.8 49 71.4
Gorai.N025700 Gossypium raimondii HOM05D003958 ORTHO05D005872 1.8e-12 77.8 49 71.4
Gohir.A02G000100 Gossypium hirsutum HOM05D003958 ORTHO05D005454 4.0e-12 76.6 47 70.2
Solyc06g053690.3 Solanum lycopersicum HOM05D003958 ORTHO05D004864 2.0e-08 64.3 60 50.0
Gohir.D11G176600 Gossypium hirsutum HOM05D003958 ORTHO05D004864 7.8e-08 62.4 98 42.9
Gorai.007G000600 Gossypium raimondii HOM05D001392 ORTHO05D014312 7.8e-08 62.4 45 64.4
Gorai.013G272500 Gossypium raimondii HOM05D003958 ORTHO05D004864 1.3e-07 61.6 98 42.9
Gohir.D07G000766 Gossypium hirsutum HOM05D003958 ORTHO05D004864 2.9e-07 60.5 98 42.9
Oeu056467.1 Olea europaea HOM05D003958 ORTHO05D004864 1.5e-06 58.2 60 43.3


User provided reference genes

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