Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c18_21770 Physcomitrium patens HOM05D003588 ORTHO05D004252 0.0e+00 2337.8 1217 100.0
Pp3c18_21850 Physcomitrium patens HOM05D003588 ORTHO05D004252 0.0e+00 2123.6 1106 99.9
Pp3c3_38010 Physcomitrium patens HOM05D003588 ORTHO05D004252 0.0e+00 1156.7 1148 56.3
Mapoly0103s0005 Marchantia polymorpha HOM05D003588 ORTHO05D004252 7.2e-298 1027.7 1127 52.4
Gohir.A07G174400 Gossypium hirsutum HOM05D003588 ORTHO05D004252 1.1e-277 960.7 1176 47.4
Thecc.04G128900 Theobroma cacao HOM05D003588 ORTHO05D004252 1.2e-276 957.2 1171 46.9
Gohir.D07G181700 Gossypium hirsutum HOM05D003588 ORTHO05D004252 6.6e-275 951.4 1176 46.9
Sed0005237 Sechium edule HOM05D003588 ORTHO05D004252 1.5e-274 950.3 1178 47.4
Gorai.001G202700 Gossypium raimondii HOM05D003588 ORTHO05D004252 9.5e-274 947.6 1176 46.9
TAR622G0110 Trochodendron aralioides HOM05D003588 ORTHO05D004252 1.8e-272 943.3 1175 46.9
CsaV3_2G033840 Cucumis sativus L. HOM05D003588 ORTHO05D004252 8.9e-272 941.0 1179 46.4
FvH4_7g07990 Fragaria vesca HOM05D003588 ORTHO05D004252 5.8e-271 938.3 1180 46.6
Nn4g23954 Nelumbo nucifera HOM05D003588 ORTHO05D004252 9.8e-271 937.6 1183 47.2
Glyma.02G089000 Glycine max HOM05D003588 ORTHO05D004252 3.7e-270 935.6 1189 46.3
Atru.chr1.1617 Acer truncatum HOM05D003588 ORTHO05D004252 3.2e-269 932.6 1187 46.9
Eucgr.F02790 Eucalyptus grandis HOM05D003588 ORTHO05D004252 3.2e-269 932.6 1172 47.2
Potri.004G095900 Populus trichocarpa HOM05D003588 ORTHO05D004252 3.5e-268 929.1 1178 45.6
DCAR_025903 Daucus carota HOM05D003588 ORTHO05D004252 7.8e-268 927.9 1172 46.3
CSS0016689 Camellia sinensis var. sinensis HOM05D003588 ORTHO05D004252 5.0e-267 925.2 1189 46.0
CANSAT78G2002 Cannabis sativa HOM05D003588 ORTHO05D004252 6.6e-267 924.9 1187 45.3
PGR004G1031 Punica granatum HOM05D003588 ORTHO05D004252 5.6e-266 921.8 1175 46.0
TWI53G1720 Tripterygium wilfordii HOM05D003588 ORTHO05D004252 5.6e-266 921.8 1176 46.4
CSS0025104 Camellia sinensis var. sinensis HOM05D003588 ORTHO05D004252 7.3e-266 921.4 1212 45.0
Duzib138G1780 Durio zibethinus HOM05D003588 ORTHO05D004252 1.6e-265 920.2 1170 46.0
PSO017G4387 Papaver somniferum HOM05D003588 ORTHO05D004252 2.1e-265 919.8 1194 45.6
Ciclev10010937m.g Citrus clementina HOM05D003588 ORTHO05D004252 2.8e-265 919.5 1176 46.0
Cc07_g08540 Coffea canephora HOM05D003588 ORTHO05D004252 5.2e-264 915.2 1184 44.9
C02p08190 Brassica napus HOM05D003588 ORTHO05D004252 4.4e-263 912.1 1168 46.7
PSO478G1111 Papaver somniferum HOM05D003588 ORTHO05D004252 5.8e-263 911.8 1173 45.5
Manes.02G071350 Manihot esculenta HOM05D003588 ORTHO05D004252 1.7e-262 910.2 1129 47.7
Prupe.3G148000 Prunus persica HOM05D003588 ORTHO05D004252 1.7e-262 910.2 1192 45.5
BolC2t06743H Brassica oleracea HOM05D003588 ORTHO05D004252 6.4e-262 908.3 1168 46.5
Hund16184 Selenicereus undatus HOM05D003588 ORTHO05D004252 8.3e-262 907.9 1127 45.3
AL6G27090 Arabidopsis lyrata HOM05D003588 ORTHO05D004252 1.3e-259 900.6 1182 45.1
BraA02t05314Z Brassica rapa HOM05D003588 ORTHO05D004252 1.7e-259 900.2 1166 46.0
Gorai.007G184400 Gossypium raimondii HOM05D003588 ORTHO05D004252 3.9e-259 899.0 1130 45.8
Nitab4.5_0000753g0220 Nicotiana tabacum HOM05D003588 ORTHO05D004252 8.6e-259 897.9 1178 45.0
Gohir.A11G165800 Gossypium hirsutum HOM05D003588 ORTHO05D004252 2.5e-258 896.3 1130 45.8
Carub.0006s1440 Capsella rubella HOM05D003588 ORTHO05D004252 5.6e-258 895.2 1184 45.2
Lj1g0020363 Lotus japonicus HOM05D003588 ORTHO05D004252 7.3e-258 894.8 1197 44.2
COL.COLO4_09374 Corchorus olitorius HOM05D003588 ORTHO05D004252 2.1e-257 893.3 1225 43.6
BcaC03g18474 Brassica carinata HOM05D003588 ORTHO05D004252 2.8e-257 892.9 1167 46.3
THA.LOC104820941 Tarenaya hassleriana HOM05D003588 ORTHO05D004252 6.2e-257 891.7 1183 44.9
FAN06G2375 Fragaria x ananassa HOM05D003588 ORTHO05D004252 1.4e-256 890.6 1253 43.5
Aa31LG11G13400 Aethionema arabicum HOM05D003588 ORTHO05D004252 1.5e-255 887.1 1193 44.6
Oeu050384.1 Olea europaea HOM05D003588 ORTHO05D004252 1.5e-255 887.1 1216 44.7
Sp6g27950 Schrenkiella parvula HOM05D003588 ORTHO05D004252 1.5e-255 887.1 1186 45.6
AT5G16210 Arabidopsis thaliana HOM05D003588 ORTHO05D004252 2.6e-255 886.3 1181 44.7
TPR.G16544 Trifolium pratense HOM05D003588 ORTHO05D004252 2.6e-255 886.3 1173 44.8
MD09G1255900 Malus domestica HOM05D003588 ORTHO05D004252 3.4e-255 885.9 1188 44.4
ECA232G2944 Erigeron canadensis HOM05D003588 ORTHO05D004252 4.4e-255 885.6 1171 44.5
ClCG11G007740 Citrullus lanatus HOM05D003588 ORTHO05D004252 7.6e-255 884.8 1178 45.4
CARHR197100 Cardamine hirsuta HOM05D003588 ORTHO05D004252 2.2e-254 883.2 1194 44.6
Os01g0514300 Oryza sativa ssp. japonica HOM05D003588 ORTHO05D004252 2.9e-254 882.9 1171 44.8
Sopen02g031000 Solanum pennellii HOM05D003588 ORTHO05D004252 2.9e-254 882.9 1196 44.6
arahy.Tifrunner.gnm1.ann1.JMF5N7 Arachis hypogaea HOM05D003588 ORTHO05D004252 3.8e-254 882.5 1177 44.9
arahy.Tifrunner.gnm1.ann1.QJYU1D Arachis hypogaea HOM05D003588 ORTHO05D004252 3.8e-254 882.5 1177 44.9
Medtr7g082650 Medicago truncatula HOM05D003588 ORTHO05D004252 6.4e-254 881.7 1165 44.5
Ca_08090_v3 Cicer arietinum L. HOM05D003588 ORTHO05D004252 8.4e-254 881.3 1176 44.6
FAN10G2177 Fragaria x ananassa HOM05D003588 ORTHO05D004252 5.4e-253 878.6 1245 43.1
Lalb_Chr10g0091441 Lupinus albus HOM05D003588 ORTHO05D004252 5.4e-253 878.6 1207 43.9
VMungo1383G2782 Vigna mungo HOM05D003588 ORTHO05D004252 7.1e-253 878.2 1177 44.9
MD17G1249900 Malus domestica HOM05D003588 ORTHO05D004252 2.7e-252 876.3 1188 44.2
Rhsim10G0072600 Rhododendron simsii HOM05D003588 ORTHO05D004252 3.5e-252 875.9 1260 42.1
AagrBONN_evm.TU.Sc2ySwM_344.2595 Anthoceros agrestis HOM05D003588 ORTHO05D004252 1.0e-251 874.4 998 49.1
AUR62023267 Chenopodium quinoa HOM05D003588 ORTHO05D004252 3.9e-251 872.5 1178 44.2
Sabra04G0065000 Salix brachista HOM05D003588 ORTHO05D004252 1.5e-250 870.5 1196 44.1
Lj4C184G4 Lonicera japonica HOM05D003588 ORTHO05D004252 5.6e-250 868.6 1211 43.4
Haze_14184 Corylus avellana HOM05D003588 ORTHO05D004252 1.2e-249 867.5 1287 41.7
Manes.01G112900 Manihot esculenta HOM05D003588 ORTHO05D004252 1.2e-249 867.5 1169 44.6
Lj2g0002647 Lotus japonicus HOM05D003588 ORTHO05D004252 9.9e-247 857.8 1142 44.8
FAN03G2066 Fragaria x ananassa HOM05D003588 ORTHO05D004252 8.4e-246 854.7 1217 42.8
Actinidia15898 Actinidia chinensis HOM05D003588 ORTHO05D004252 1.1e-245 854.4 1164 44.4
EL10Ac2g04530 Beta vulgaris HOM05D003588 ORTHO05D004252 1.9e-245 853.6 1237 42.9
Ca_04138_v3 Cicer arietinum L. HOM05D003588 ORTHO05D004252 1.7e-243 847.0 1183 43.4
Ah.10g037630 Amaranthus hybridus HOM05D003588 ORTHO05D004252 2.8e-241 839.7 1172 44.7
BcaNung02226 Brassica carinata HOM05D003588 ORTHO05D004252 6.2e-241 838.6 1154 44.3
Thhalv10012470m.g Eutrema salsugineum HOM05D003588 ORTHO05D004252 1.1e-240 837.8 1184 43.7
Glyma.05G002100 Glycine max HOM05D003588 ORTHO05D004252 3.1e-240 836.3 1203 41.6
Migut.H00238 Erythranthe guttata HOM05D003588 ORTHO05D004252 6.9e-240 835.1 1066 44.8
CSS0045616 Camellia sinensis var. sinensis HOM05D003588 ORTHO05D004252 2.0e-239 833.6 1168 43.8
Psat3g097680 Pisum sativum HOM05D003588 ORTHO05D004252 3.0e-235 819.7 1167 43.0
SGA_v2.0_scaffold49G18119 Striga asiatica HOM05D003588 ORTHO05D004252 5.1e-235 818.9 1189 42.2
Medtr6g004240 Medicago truncatula HOM05D003588 ORTHO05D004252 6.7e-235 818.5 1171 42.6
MELO3C008156.2 Cucumis melo HOM05D003588 ORTHO05D004252 1.1e-234 817.8 1028 46.6
ATR0681G033 Amborella trichopoda HOM05D003588 ORTHO05D004252 6.2e-233 812.0 1045 45.4
Lalb_Chr06g0176731 Lupinus albus HOM05D003588 ORTHO05D004252 3.4e-231 806.2 1144 42.7
MBI16_g38076_MAGBIO Magnolia biondii HOM05D003588 ORTHO05D004252 5.8e-231 805.4 1069 44.3
SMO356G0339 Selaginella moellendorffii HOM05D003588 ORTHO05D004252 1.4e-229 800.8 1132 43.2
GSVIVG01030979001 Vitis vinifera HOM05D003588 ORTHO05D004252 7.1e-229 798.5 1024 44.7
AUR62009039 Chenopodium quinoa HOM05D003588 ORTHO05D004252 5.1e-227 792.3 1020 45.1
QL02p050339 Quercus lobata HOM05D003588 ORTHO05D004252 1.9e-226 790.4 1075 44.4
Solyc02g086330.4 Solanum lycopersicum HOM05D003588 ORTHO05D004252 9.6e-226 788.1 1047 44.3
CiPaw.04G044200 Carya illinoinensis HOM05D003588 ORTHO05D004252 1.3e-225 787.7 720 56.7
MSTRG.2779 Avicennia marina HOM05D003588 ORTHO05D004252 2.4e-224 783.5 1025 45.0
VMungo0464G0444 Vigna mungo HOM05D003588 ORTHO05D004252 1.2e-223 781.2 1188 41.0
A02p03430 Brassica napus HOM05D003588 ORTHO05D004252 3.4e-223 779.6 889 50.2
Gohir.D11G172000 Gossypium hirsutum HOM05D003588 ORTHO05D004252 5.8e-223 778.9 960 46.2
Dinv34794 Davidia involucrata HOM05D003588 ORTHO05D004252 1.3e-222 777.7 1025 44.9
CAN.G625.55 Capsicum annuum HOM05D003588 ORTHO05D000105 1.9e-221 773.9 1011 44.7
vmacro22953 Vaccinium macrocarpon HOM05D003588 ORTHO05D004252 1.9e-221 773.9 1513 35.8
BcaC03g18481 Brassica carinata HOM05D003588 ORTHO05D004252 7.1e-221 771.9 1178 41.8
arahy.Tifrunner.gnm1.ann1.K3Z2GB Arachis hypogaea HOM05D003588 ORTHO05D004252 1.2e-220 771.2 1171 40.4
Psat1g052560 Pisum sativum HOM05D003588 ORTHO05D004252 5.1e-219 765.8 1039 43.3
Phvul.008G008300 Phaseolus vulgaris HOM05D003588 ORTHO05D004252 2.8e-217 760.0 718 55.3
Nitab4.5_0008521g0020 Nicotiana tabacum HOM05D003588 ORTHO05D004252 1.1e-216 758.1 1184 40.5
QL04p012047 Quercus lobata HOM05D003588 ORTHO05D004252 1.4e-216 757.7 714 55.9
Lsat_1_v5_gn_4_155600 Lactuca sativa HOM05D003588 ORTHO05D004252 3.1e-216 756.5 1011 43.9
HanXRQChr09g0262691 Helianthus annuus HOM05D003588 ORTHO05D004252 4.2e-213 746.1 1004 43.7
TPR.G25236 Trifolium pratense HOM05D003588 ORTHO05D004252 7.4e-210 735.3 1040 42.7
unitig_899.g14514 Utricularia gibba HOM05D003588 ORTHO05D004252 3.1e-208 729.9 1195 38.7
Phvul.004G002300 Phaseolus vulgaris HOM05D003588 ORTHO05D004252 7.7e-207 725.3 1008 42.7
Sc10g0001060 Simmondsia chinensis HOM05D003588 ORTHO05D004252 7.9e-204 715.3 970 43.7
Peaxi162Scf00877g00020 Petunia axillaris HOM05D003588 ORTHO05D004252 4.4e-202 709.5 1004 43.0
arahy.Tifrunner.gnm1.ann1.CE0ZIG Arachis hypogaea HOM05D003588 ORTHO05D004252 1.7e-201 707.6 991 42.2
Cpa.g.sc170.32 Carica papaya HOM05D003588 ORTHO05D004252 2.1e-196 690.6 1178 39.0
CBR_g34722 Chara braunii HOM05D003588 ORTHO05D004252 6.1e-196 689.1 1353 34.7
HPP92_020150 Vanilla planifolia HOM05D003588 ORTHO05D004252 1.0e-187 661.8 908 43.3
MD17G1249700 Malus domestica HOM05D003588 ORTHO05D004252 1.2e-186 658.3 700 52.0
Dinv33964 Davidia involucrata HOM05D003588 ORTHO05D004252 2.2e-185 654.1 655 52.8
vmacro05528 Vaccinium macrocarpon HOM05D003588 ORTHO05D004252 1.8e-171 607.8 698 49.0
MBI16_g39817_MAGBIO Magnolia biondii HOM05D003588 ORTHO05D004252 4.7e-164 583.2 844 42.4
Duzib133G0570 Durio zibethinus HOM05D003588 ORTHO05D004252 5.4e-144 516.5 552 48.6
CDE09G1345 Ceratophyllum demersum HOM05D003588 ORTHO05D004252 5.8e-130 469.9 762 39.8
Aqoxy3G00199 Aquilegia oxysepala HOM05D003588 ORTHO05D004252 4.8e-116 423.7 420 51.2
Aqoxy3G00198 Aquilegia oxysepala HOM05D003588 ORTHO05D004252 6.0e-111 406.8 609 43.2
RcHm_v2.0_Chr3g0494111 Rosa chinensis HOM05D003588 ORTHO05D004252 5.1e-110 403.7 627 41.0
RcHm_v2.0_Chr3g0494121 Rosa chinensis HOM05D003588 ORTHO05D004252 3.4e-106 391.0 406 48.8
TPR.G25232 Trifolium pratense HOM05D003588 ORTHO05D004252 6.7e-94 350.1 376 50.5
arahy.Tifrunner.gnm1.ann1.SZ4JBM Arachis hypogaea HOM05D003588 ORTHO05D009236 1.7e-89 335.5 593 38.4
MD17G1249200 Malus domestica HOM05D003588 ORTHO05D004252 2.9e-89 334.7 417 44.8
Zm00001eb341840 Zea mays HOM05D003588 ORTHO05D004252 1.1e-75 289.7 291 51.9
FAN01G1119 Fragaria x ananassa HOM05D003588 ORTHO05D004252 2.5e-72 278.5 327 49.2
Zm00001eb341830 Zea mays HOM05D003588 ORTHO05D004252 1.4e-70 272.7 225 59.6
BcaC04g18898 Brassica carinata HOM05D003588 ORTHO05D004252 4.0e-70 271.2 363 46.6
Dinv33965 Davidia involucrata HOM05D003588 ORTHO05D004252 7.5e-61 240.4 509 35.2
A10p22850 Brassica napus HOM05D003588 ORTHO05D004252 4.9e-52 211.1 376 35.1
BraA10t44352Z Brassica rapa HOM05D003588 ORTHO05D004252 1.2e-50 206.5 357 35.9
C09p60810 Brassica napus HOM05D003588 ORTHO05D004252 2.0e-42 179.1 278 42.1
BolC9t58921H Brassica oleracea HOM05D003588 ORTHO05D004252 2.0e-42 179.1 278 42.1
Psat1g004680 Pisum sativum HOM05D003588 ORTHO05D004252 5.2e-38 164.5 185 48.1
CDE09G0638 Ceratophyllum demersum HOM05D003588 ORTHO05D004252 6.4e-36 157.5 192 43.2
CAN.G1113.1 Capsicum annuum HOM05D003588 ORTHO05D004252 2.6e-29 135.6 382 27.7
Cre03.g205137 Chlamydomonas reinhardtii HOM05D003588 ORTHO05D004252 3.9e-25 121.7 189 37.0
MBI16_g38075_MAGBIO Magnolia biondii HOM05D003588 ORTHO05D004252 7.3e-24 117.5 151 45.0
GSVIVG01030980001 Vitis vinifera HOM05D003588 ORTHO05D004252 7.3e-24 117.5 139 48.2
FAN01G1795 Fragaria x ananassa HOM05D003588 ORTHO05D004252 9.6e-24 117.1 379 29.8
BcaB05g22772 Brassica carinata HOM05D003588 ORTHO05D004252 2.1e-23 115.9 203 37.4
Hma1.2p1_0391F.1_g142780 Hydrangea macrophylla HOM05D003588 ORTHO05D004252 6.2e-23 114.4 104 55.8
RcHm_v2.0_Chr3g0494131 Rosa chinensis HOM05D003588 ORTHO05D004252 1.8e-22 112.8 130 49.2
MSTRG.2778 Avicennia marina HOM05D003588 ORTHO05D004252 3.1e-22 112.1 149 43.0
Gohir.A08G093462 Gossypium hirsutum HOM05D003588 ORTHO05D004252 3.1e-22 112.1 161 40.4
Aqoxy3G00200 Aquilegia oxysepala HOM05D003588 ORTHO05D004252 5.2e-22 111.3 135 48.9
HanXRQChr09g0262701 Helianthus annuus HOM05D003588 ORTHO05D004252 1.2e-21 110.2 137 48.2
Lalb_Chr00c03g0404241 Lupinus albus HOM05D003588 ORTHO05D004252 9.9e-21 107.1 115 48.7
Cfa007893 Carpinus fangiana HOM05D003588 ORTHO05D004252 3.8e-20 105.1 138 44.2
Lsat_1_v5_gn_4_155620 Lactuca sativa HOM05D003588 ORTHO05D004252 1.4e-19 103.2 136 47.8
QL02p050347 Quercus lobata HOM05D003588 ORTHO05D004252 1.2e-18 100.1 123 47.2
ATR0681G242 Amborella trichopoda HOM05D003588 ORTHO05D004252 7.8e-18 97.4 99 53.5
Dinv34795 Davidia involucrata HOM05D003588 ORTHO05D004252 1.7e-17 96.3 77 61.0
Lsat_1_v5_gn_9_96101 Lactuca sativa HOM05D003588 ORTHO05D004252 4.8e-15 88.2 70 62.9
Thhalv10014979m.g Eutrema salsugineum HOM05D003588 ORTHO05D004252 6.2e-15 87.8 102 43.1
arahy.Tifrunner.gnm1.ann1.3AG3I6 Arachis hypogaea HOM05D003588 ORTHO05D004252 2.4e-14 85.9 83 50.6
AUR62009038 Chenopodium quinoa HOM05D003588 ORTHO05D004252 4.0e-14 85.1 115 45.2
Lsat_1_v5_gn_5_147680 Lactuca sativa HOM05D003588 ORTHO05D004252 4.2e-11 75.1 86 46.5
arahy.Tifrunner.gnm1.ann1.LXU3L0 Arachis hypogaea HOM05D003588 ORTHO05D004252 2.1e-10 72.8 145 33.1
SEGI_01406 Sequoiadendron giganteum HOM05D003588 ORTHO05D004252 5.1e-09 68.2 120 38.3
CDE02G3249 Ceratophyllum demersum HOM05D003588 ORTHO05D004252 1.5e-08 66.6 138 32.6
Aqoxy1G03195 Aquilegia oxysepala HOM05D003588 ORTHO05D004252 5.6e-08 64.7 62 45.2
Lalb_Chr00c03g0404231 Lupinus albus HOM05D003588 ORTHO05D004252 5.6e-08 64.7 104 29.8
MCO16G648 Micromonas commoda HOM05D003588 ORTHO05D004252 7.3e-08 64.3 155 31.0
CDE02G1293 Ceratophyllum demersum HOM05D003588 ORTHO05D004252 1.6e-07 63.2 71 43.7
Lsat_1_v5_gn_1_73461 Lactuca sativa HOM05D003588 ORTHO05D004252 4.8e-07 61.6 97 38.1
QL04p012055 Quercus lobata HOM05D003588 ORTHO05D004252 5.3e-06 58.2 54 46.3
BcaB08g36855 Brassica carinata HOM05D003588 ORTHO05D004252 9.0e-06 57.4 118 39.8


User provided reference genes

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