Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c18_21050 Physcomitrium patens HOM05D005845 ORTHO05D007067 8.4e-58 226.9 119 100.0
Pp3c22_8010 Physcomitrium patens HOM05D005845 ORTHO05D007067 2.0e-35 152.5 118 67.8
AagrBONN_evm.TU.Sc2ySwM_344.1593 Anthoceros agrestis HOM05D005845 ORTHO05D007067 8.7e-23 110.5 73 71.2
GSVIVG01034129001 Vitis vinifera HOM05D005845 ORTHO05D007067 3.3e-22 108.6 73 71.2
Potri.006G088200 Populus trichocarpa HOM05D005845 ORTHO05D007067 4.3e-22 108.2 98 56.1
Nn2g13425 Nelumbo nucifera HOM05D005845 ORTHO05D007067 1.3e-21 106.7 73 71.2
Thecc.05G035600 Theobroma cacao HOM05D005845 ORTHO05D007067 1.6e-21 106.3 73 69.9
Cpa.g.sc3458.2 Carica papaya HOM05D005845 ORTHO05D007067 2.2e-21 105.9 73 69.9
Duzib106G0947 Durio zibethinus HOM05D005845 ORTHO05D007067 2.8e-21 105.5 73 71.2
ATR0559G337 Amborella trichopoda HOM05D005845 ORTHO05D007067 3.7e-21 105.1 73 69.9
Eucgr.K03081 Eucalyptus grandis HOM05D005845 ORTHO05D007067 3.7e-21 105.1 73 72.6
Gorai.009G405900 Gossypium raimondii HOM05D005845 ORTHO05D007067 3.7e-21 105.1 73 71.2
RcHm_v2.0_Chr3g0466071 Rosa chinensis HOM05D005845 ORTHO05D007067 3.7e-21 105.1 73 68.5
MBI05_g35632_MAGBIO Magnolia biondii HOM05D005845 ORTHO05D007067 4.8e-21 104.8 73 67.1
Gohir.A07G012100 Gossypium hirsutum HOM05D005845 ORTHO05D007067 6.3e-21 104.4 71 71.8
Gohir.D07G011900 Gossypium hirsutum HOM05D005845 ORTHO05D007067 6.3e-21 104.4 71 71.8
Gorai.001G012600 Gossypium raimondii HOM05D005845 ORTHO05D007067 6.3e-21 104.4 71 71.8
Mapoly0151s0005 Marchantia polymorpha HOM05D005845 ORTHO05D007067 6.3e-21 104.4 71 69.0
Os05g0292800 Oryza sativa ssp. japonica HOM05D005845 ORTHO05D007067 6.3e-21 104.4 118 51.7
COL.COLO4_14759 Corchorus olitorius HOM05D005845 ORTHO05D007067 8.2e-21 104.0 73 69.9
Zm00001eb299980 Zea mays HOM05D005845 ORTHO05D007067 8.2e-21 104.0 72 69.4
Cc06_g02340 Coffea canephora HOM05D005845 ORTHO05D007067 1.1e-20 103.6 87 58.6
FvH4_6g13240 Fragaria vesca HOM05D005845 ORTHO05D007067 1.4e-20 103.2 73 65.8
FAN02G1947 Fragaria x ananassa HOM05D005845 ORTHO05D007067 1.4e-20 103.2 73 65.8
FAN14G4222 Fragaria x ananassa HOM05D005845 ORTHO05D007067 1.4e-20 103.2 73 65.8
Gohir.D04G102600 Gossypium hirsutum HOM05D005845 ORTHO05D007067 1.4e-20 103.2 73 69.9
MD04G1132800 Malus domestica HOM05D005845 ORTHO05D007067 1.4e-20 103.2 73 68.5
Nitab4.5_0000705g0030 Nicotiana tabacum HOM05D005845 ORTHO05D007067 1.4e-20 103.2 91 58.2
Hund14261 Selenicereus undatus HOM05D006267 ORTHO05D007490 1.4e-20 103.2 73 69.9
CSS0047206 Camellia sinensis var. sinensis HOM05D005845 ORTHO05D007067 1.8e-20 102.8 88 59.1
Eucgr.K03092 Eucalyptus grandis HOM05D005845 ORTHO05D007067 1.8e-20 102.8 73 71.2
Nitab4.5_0003394g0030 Nicotiana tabacum HOM05D005845 ORTHO05D007067 1.8e-20 102.8 91 58.2
TWI74G0153 Tripterygium wilfordii HOM05D005845 ORTHO05D007067 1.8e-20 102.8 118 47.5
TAR633G1058 Trochodendron aralioides HOM05D005845 ORTHO05D007067 1.8e-20 102.8 73 67.1
TAR633G1228 Trochodendron aralioides HOM05D005845 ORTHO05D007067 1.8e-20 102.8 73 67.1
EL10Ac2g03022 Beta vulgaris HOM05D005845 ORTHO05D007067 3.1e-20 102.1 73 68.5
Sed0011119 Sechium edule HOM05D005845 ORTHO05D007067 4.1e-20 101.7 73 67.1
TWI77G0787 Tripterygium wilfordii HOM05D005845 ORTHO05D007067 4.1e-20 101.7 119 48.7
Solyc09g011010.3 Solanum lycopersicum HOM05D005845 ORTHO05D007067 5.3e-20 101.3 88 56.8
Sopen09g005730 Solanum pennellii HOM05D005845 ORTHO05D007067 5.3e-20 101.3 88 56.8
CiPaw.10G147000 Carya illinoinensis HOM05D005845 ORTHO05D007067 6.9e-20 100.9 73 64.4
CAN.G597.2 Capsicum annuum HOM05D005845 ORTHO05D007067 9.0e-20 100.5 73 64.4
Os12g0480100 Oryza sativa ssp. japonica HOM05D005845 ORTHO05D007067 9.0e-20 100.5 72 65.3
Prupe.6G259200 Prunus persica HOM05D005845 ORTHO05D007067 9.0e-20 100.5 73 65.8
PGR004G0892 Punica granatum HOM05D005845 ORTHO05D007067 9.0e-20 100.5 105 56.2
arahy.Tifrunner.gnm1.ann1.D19TT3 Arachis hypogaea HOM05D005845 ORTHO05D007067 1.2e-19 100.1 82 59.8
ClCG10G021330 Citrullus lanatus HOM05D005845 ORTHO05D007067 1.2e-19 100.1 73 67.1
MD12G1145500 Malus domestica HOM05D005845 ORTHO05D007067 1.2e-19 100.1 73 65.8
Manes.09G092274 Manihot esculenta HOM05D005845 ORTHO05D007067 1.2e-19 100.1 73 68.5
vmacro20178 Vaccinium macrocarpon HOM05D005845 ORTHO05D007067 1.2e-19 100.1 73 64.4
arahy.Tifrunner.gnm1.ann1.1Q4DHH Arachis hypogaea HOM05D005845 ORTHO05D007067 1.5e-19 99.8 82 61.0
CsaV3_3G034730 Cucumis sativus L. HOM05D005845 ORTHO05D007067 1.5e-19 99.8 71 67.6
A05p39650 Brassica napus HOM05D005845 ORTHO05D007067 2.0e-19 99.4 120 54.2
QL07p030115 Quercus lobata HOM05D005845 ORTHO05D007067 2.0e-19 99.4 72 65.3
QL07p030897 Quercus lobata HOM05D005845 ORTHO05D007067 2.0e-19 99.4 72 65.3
Rhsim05G0194900 Rhododendron simsii HOM05D005845 ORTHO05D007067 2.0e-19 99.4 73 65.8
arahy.Tifrunner.gnm1.ann1.CX8U58 Arachis hypogaea HOM05D005845 ORTHO05D007067 2.6e-19 99.0 120 52.5
BcaC05g29660 Brassica carinata HOM05D005845 ORTHO05D007067 2.6e-19 99.0 117 53.0
C05p58690 Brassica napus HOM05D005845 ORTHO05D007067 2.6e-19 99.0 117 53.0
BolC5t34518H Brassica oleracea HOM05D005845 ORTHO05D007067 2.6e-19 99.0 117 53.0
Hma1.2p1_0936F.1_g238990 Hydrangea macrophylla HOM05D005845 ORTHO05D007067 2.6e-19 99.0 73 65.8
Lj3A964T57 Lonicera japonica HOM05D005845 ORTHO05D007067 2.6e-19 99.0 73 64.4
SEGI_39626 Sequoiadendron giganteum HOM05D005845 ORTHO05D007067 2.6e-19 99.0 73 64.4
HanXRQChr02g0050481 Helianthus annuus HOM05D005845 ORTHO05D007067 3.4e-19 98.6 77 58.4
CANSAT35G1952 Cannabis sativa HOM05D005845 ORTHO05D007067 4.5e-19 98.2 73 67.1
Ciclev10013078m.g Citrus clementina HOM05D005845 ORTHO05D007067 4.5e-19 98.2 73 67.1
Gohir.A04G065200 Gossypium hirsutum HOM05D005845 ORTHO05D007067 4.5e-19 98.2 76 68.4
PGSC0003DMG400008901 Solanum tuberosum HOM05D005845 ORTHO05D007067 4.5e-19 98.2 88 55.7
BcaC05g29521 Brassica carinata HOM05D005845 ORTHO05D007067 5.9e-19 97.8 120 53.3
BraA05t22747Z Brassica rapa HOM05D005845 ORTHO05D007067 5.9e-19 97.8 120 53.3
Sc01g0004490 Simmondsia chinensis HOM05D005845 ORTHO05D007067 5.9e-19 97.8 73 64.4
BcaB01g06213 Brassica carinata HOM05D005845 ORTHO05D007067 7.7e-19 97.4 73 63.0
AUR62018118 Chenopodium quinoa HOM05D005845 ORTHO05D007067 7.7e-19 97.4 73 63.0
CARHR083690 Cardamine hirsuta HOM05D005845 ORTHO05D007067 1.0e-18 97.1 73 67.1
Haze_20829 Corylus avellana HOM05D005320 ORTHO05D007922 1.0e-18 97.1 124 48.4
PSO513G0176 Papaver somniferum HOM05D005845 ORTHO05D007067 1.0e-18 97.1 73 64.4
THA.LOC104816255 Tarenaya hassleriana HOM05D005845 ORTHO05D007067 1.0e-18 97.1 73 67.1
VMungo1383G2075 Vigna mungo HOM05D005845 ORTHO05D007067 1.0e-18 97.1 73 65.8
ECA233G0482 Erigeron canadensis HOM05D005845 ORTHO05D007067 1.3e-18 96.7 109 45.9
Atru.chr8.2014 Acer truncatum HOM05D005320 ORTHO05D007922 1.7e-18 96.3 119 44.5
Ca_07339_v3 Cicer arietinum L. HOM05D005845 ORTHO05D007067 2.2e-18 95.9 73 61.6
Glyma.07G135300 Glycine max HOM05D005845 ORTHO05D007067 2.2e-18 95.9 73 65.8
Peaxi162Scf00527g00733 Petunia axillaris HOM05D005845 ORTHO05D007067 2.2e-18 95.9 121 47.1
Phvul.008G118000 Phaseolus vulgaris HOM05D005845 ORTHO05D007067 2.9e-18 95.5 73 63.0
SalBow1G4544 Salvia bowleyana HOM05D005845 ORTHO05D007067 2.9e-18 95.5 73 60.3
SalBow7G2664 Salvia bowleyana HOM05D005845 ORTHO05D007067 2.9e-18 95.5 73 60.3
Lsat_1_v5_gn_6_22520 Lactuca sativa HOM05D005845 ORTHO05D007067 3.8e-18 95.1 73 56.2
Sabra06G0067200 Salix brachista HOM05D000102 ORTHO05D004225 3.8e-18 95.1 84 56.0
AL3G20470 Arabidopsis lyrata HOM05D005845 ORTHO05D007067 5.0e-18 94.7 117 49.6
CARHR211240 Cardamine hirsuta HOM05D005845 ORTHO05D007067 5.0e-18 94.7 73 63.0
Migut.L01960 Erythranthe guttata HOM05D005845 ORTHO05D007067 5.0e-18 94.7 115 47.0
FAN05G4617 Fragaria x ananassa HOM05D005845 ORTHO05D007067 5.0e-18 94.7 73 63.0
Sp6g40320 Schrenkiella parvula HOM05D005845 ORTHO05D007067 5.0e-18 94.7 86 58.1
AL6G11350 Arabidopsis lyrata HOM05D005845 ORTHO05D007067 6.5e-18 94.4 73 63.0
AT5G02120 Arabidopsis thaliana HOM05D005845 ORTHO05D007067 6.5e-18 94.4 73 63.0
arahy.Tifrunner.gnm1.ann1.1BNP0N Arachis hypogaea HOM05D005845 ORTHO05D007067 6.5e-18 94.4 75 64.0
Carub.0006s0096 Capsella rubella HOM05D005845 ORTHO05D007067 6.5e-18 94.4 73 63.0
Thhalv10015070m.g Eutrema salsugineum HOM05D005845 ORTHO05D007067 6.5e-18 94.4 73 64.4
Lalb_Chr03g0042411 Lupinus albus HOM05D005845 ORTHO05D007067 6.5e-18 94.4 72 63.9
PSO339G6396 Papaver somniferum HOM05D005845 ORTHO05D007067 6.5e-18 94.4 73 63.0
Aqoxy1G00879 Aquilegia oxysepala HOM05D005845 ORTHO05D007067 8.5e-18 94.0 72 62.5
A03p00540 Brassica napus HOM05D005845 ORTHO05D007067 8.5e-18 94.0 73 63.0
BraA03t09444Z Brassica rapa HOM05D005845 ORTHO05D007067 8.5e-18 94.0 73 63.0
CDE06G2558 Ceratophyllum demersum HOM05D000816 ORTHO05D009154 8.5e-18 94.0 88 51.1
AUR62034449 Chenopodium quinoa HOM05D005845 ORTHO05D007067 8.5e-18 94.0 73 61.6
Sp3g07700 Schrenkiella parvula HOM05D005845 ORTHO05D007067 1.1e-17 93.6 117 48.7
Aa31LG3G1810 Aethionema arabicum HOM05D005845 ORTHO05D007067 1.9e-17 92.8 117 50.4
BcaB01g06068 Brassica carinata HOM05D005845 ORTHO05D007067 1.9e-17 92.8 73 61.6
C03p00800 Brassica napus HOM05D005845 ORTHO05D007067 1.9e-17 92.8 73 61.6
BolC3t12643H Brassica oleracea HOM05D005845 ORTHO05D007067 1.9e-17 92.8 73 61.6
Lj1g0012131 Lotus japonicus HOM05D005845 ORTHO05D007067 2.5e-17 92.4 71 63.4
Psat3g137040 Pisum sativum HOM05D005845 ORTHO05D007067 2.5e-17 92.4 73 58.9
Carub.0003s0843 Capsella rubella HOM05D005845 ORTHO05D007067 4.2e-17 91.7 73 61.6
DCAR_028759 Daucus carota HOM05D005845 ORTHO05D007067 7.2e-17 90.9 124 41.9
Lalb_Chr01g0022631 Lupinus albus HOM05D005845 ORTHO05D007067 7.2e-17 90.9 72 62.5
Rhsim04G0158900 Rhododendron simsii HOM05D005845 ORTHO05D007067 1.6e-16 89.7 90 53.3
Eucgr.G01508 Eucalyptus grandis HOM05D005845 ORTHO05D007067 2.1e-16 89.4 61 68.9
Zm00001eb090340 Zea mays HOM05D005845 ORTHO05D007067 3.6e-16 88.6 64 65.6
Medtr7g062970 Medicago truncatula HOM05D005845 ORTHO05D007067 7.9e-16 87.4 73 56.2
Eucgr.K03089 Eucalyptus grandis HOM05D005845 ORTHO05D007067 8.8e-15 84.0 62 64.5
CBR_g4596 Chara braunii HOM05D005845 ORTHO05D007067 2.0e-14 82.8 73 58.9
Eucgr.K03094 Eucalyptus grandis HOM05D005845 ORTHO05D007067 1.3e-13 80.1 61 65.6
MELO3C009241.2 Cucumis melo HOM05D005845 ORTHO05D007067 2.2e-13 79.3 102 45.1
HPP92_019240 Vanilla planifolia HOM05D005845 ORTHO05D007067 4.8e-13 78.2 75 57.3
Oeu023072.1 Olea europaea HOM05D005845 ORTHO05D007067 3.4e-11 72.0 56 58.9
Zm00001eb372120 Zea mays HOM05D005845 ORTHO05D007067 4.5e-11 71.6 81 46.9
Glyma.18G185300 Glycine max HOM05D005845 ORTHO05D007067 1.7e-10 69.7 43 74.4
SEGI_14936 Sequoiadendron giganteum HOM05D005845 ORTHO05D007067 3.8e-10 68.6 52 59.6
Actinidia11275 Actinidia chinensis HOM05D005845 ORTHO05D007067 1.1e-09 67.0 56 58.9
Dinv35574 Davidia involucrata HOM05D005845 ORTHO05D007067 2.5e-09 65.9 60 55.0
Eucgr.G00292 Eucalyptus grandis HOM05D005845 ORTHO05D007067 9.4e-09 63.9 83 44.6
TAR369G0629 Trochodendron aralioides HOM05D005845 ORTHO05D007067 1.2e-08 63.5 60 51.7
Eucgr.K03086 Eucalyptus grandis HOM05D005845 ORTHO05D007067 3.6e-08 62.0 48 62.5
Cre02.g109950 Chlamydomonas reinhardtii HOM05D005845 ORTHO05D007067 1.8e-07 59.7 75 42.7
Rhsim04G0160800 Rhododendron simsii HOM05D005845 ORTHO05D007067 2.6e-06 55.8 37 70.3


User provided reference genes

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