Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c18_15660 Physcomitrium patens HOM05D005222 ORTHO05D006230 3.6e-48 194.5 94 100.0
Pp3c22_9040 Physcomitrium patens HOM05D005222 ORTHO05D006230 3.0e-26 121.7 65 90.8
Mapoly0022s0111 Marchantia polymorpha HOM05D005222 ORTHO05D006230 9.0e-23 110.2 65 78.5
CAN.G65.111 Capsicum annuum HOM05D005222 ORTHO05D006230 6.5e-21 104.0 66 68.2
Peaxi162Scf01064g00238 Petunia axillaris HOM05D005222 ORTHO05D006230 1.1e-20 103.2 66 69.7
Ciclev10033230m.g Citrus clementina HOM05D005222 ORTHO05D006230 1.4e-20 102.8 66 69.7
Aa31LG3G7230 Aethionema arabicum HOM05D005222 ORTHO05D006230 1.9e-20 102.4 66 66.7
Thecc.03G136000 Theobroma cacao HOM05D005222 ORTHO05D006230 1.9e-20 102.4 66 66.7
TWI23G0048 Tripterygium wilfordii HOM05D005222 ORTHO05D006230 1.9e-20 102.4 66 66.7
TWI39G0019 Tripterygium wilfordii HOM05D005222 ORTHO05D006230 1.9e-20 102.4 66 66.7
Prupe.5G146200 Prunus persica HOM05D005222 ORTHO05D006230 2.5e-20 102.1 66 66.7
MD14G1151000 Malus domestica HOM05D005222 ORTHO05D006230 3.2e-20 101.7 66 66.7
Cfa018742 Carpinus fangiana HOM05D005222 ORTHO05D006230 4.2e-20 101.3 66 66.7
CDE06G2816 Ceratophyllum demersum HOM05D005222 ORTHO05D006230 4.2e-20 101.3 66 65.2
Haze_07194 Corylus avellana HOM05D005222 ORTHO05D006230 4.2e-20 101.3 66 66.7
Duzib205G1725 Durio zibethinus HOM05D005222 ORTHO05D006230 4.2e-20 101.3 66 65.2
DCAR_016362 Daucus carota HOM05D005222 ORTHO05D006230 5.5e-20 100.9 66 66.7
Nn3g16353 Nelumbo nucifera HOM05D005222 ORTHO05D006230 5.5e-20 100.9 66 66.7
THA.LOC104811566 Tarenaya hassleriana HOM05D005222 ORTHO05D006230 5.5e-20 100.9 64 67.2
ATR0582G313 Amborella trichopoda HOM05D005222 ORTHO05D006230 7.1e-20 100.5 64 70.3
CDE02G1328 Ceratophyllum demersum HOM05D005222 ORTHO05D006230 7.1e-20 100.5 66 63.6
Manes.06G123800 Manihot esculenta HOM05D005222 ORTHO05D006230 7.1e-20 100.5 66 65.2
PSO063G7191 Papaver somniferum HOM05D005222 ORTHO05D006230 7.1e-20 100.5 66 65.2
PSO782G1904 Papaver somniferum HOM05D005222 ORTHO05D006230 7.1e-20 100.5 66 65.2
SEGI_36916 Sequoiadendron giganteum HOM05D005222 ORTHO05D006230 7.1e-20 100.5 64 68.8
Solyc06g072600.3 Solanum lycopersicum HOM05D005222 ORTHO05D006230 7.1e-20 100.5 66 65.2
Sopen06g028950 Solanum pennellii HOM05D005222 ORTHO05D006230 7.1e-20 100.5 66 65.2
MD06G1135800 Malus domestica HOM05D005222 ORTHO05D006230 9.3e-20 100.1 66 65.2
GSVIVG01008600001 Vitis vinifera HOM05D005222 ORTHO05D006230 9.3e-20 100.1 66 66.7
CiPaw.11G003300 Carya illinoinensis HOM05D005222 ORTHO05D006230 1.2e-19 99.8 66 66.7
PGSC0003DMG400027040 Solanum tuberosum HOM05D005222 ORTHO05D006230 1.2e-19 99.8 66 65.2
Peaxi162Scf00516g00032 Petunia axillaris HOM05D005222 ORTHO05D006230 2.1e-19 99.0 63 68.3
MBI07_g24748_MAGBIO Magnolia biondii HOM05D005222 ORTHO05D006230 2.7e-19 98.6 66 63.6
Nitab4.5_0001464g0100 Nicotiana tabacum HOM05D005222 ORTHO05D006230 2.7e-19 98.6 66 63.6
Atru.chr6.1879 Acer truncatum HOM05D005222 ORTHO05D006230 3.5e-19 98.2 63 68.3
RcHm_v2.0_Chr7g0189291 Rosa chinensis HOM05D005222 ORTHO05D006230 3.5e-19 98.2 64 65.6
Hund02474 Selenicereus undatus HOM05D005222 ORTHO05D006230 3.5e-19 98.2 64 67.2
Actinidia25544 Actinidia chinensis HOM05D005222 ORTHO05D006230 4.6e-19 97.8 64 65.6
Dinv11207 Davidia involucrata HOM05D005222 ORTHO05D006230 4.6e-19 97.8 66 65.2
Sc04g0000390 Simmondsia chinensis HOM05D005222 ORTHO05D006230 4.6e-19 97.8 64 67.2
FAN13G0479 Fragaria x ananassa HOM05D005222 ORTHO05D006230 6.0e-19 97.4 63 66.7
Hma1.2p1_0168F.1_g074260 Hydrangea macrophylla HOM05D005222 ORTHO05D006230 6.0e-19 97.4 66 63.6
Sabra15G0122200 Salix brachista HOM05D005222 ORTHO05D006230 6.0e-19 97.4 66 63.6
Sc22g0003810 Simmondsia chinensis HOM05D005222 ORTHO05D006230 6.0e-19 97.4 64 67.2
Rhsim08G0194200 Rhododendron simsii HOM05D005222 ORTHO05D006230 7.9e-19 97.1 64 64.1
GSVIVG01033034001 Vitis vinifera HOM05D005222 ORTHO05D006230 7.9e-19 97.1 66 65.2
EL10Ac5g11344 Beta vulgaris HOM05D005222 ORTHO05D006230 1.0e-18 96.7 64 67.2
Ca_16071_v3 Cicer arietinum L. HOM05D005222 ORTHO05D006230 1.0e-18 96.7 66 62.1
Dinv23190 Davidia involucrata HOM05D005222 ORTHO05D006230 1.0e-18 96.7 66 63.6
Duzib084G0042 Durio zibethinus HOM05D005222 ORTHO05D006230 1.0e-18 96.7 66 65.2
FvH4_5g08990 Fragaria vesca HOM05D005222 ORTHO05D006230 1.0e-18 96.7 63 66.7
FAN08G1832 Fragaria x ananassa HOM05D005222 ORTHO05D006230 1.0e-18 96.7 63 65.1
Glyma.06G166600 Glycine max HOM05D005222 ORTHO05D006230 1.0e-18 96.7 66 63.6
Carub.0008s1080 Capsella rubella HOM05D005222 ORTHO05D006230 1.3e-18 96.3 63 61.9
Cc04_g09830 Coffea canephora HOM05D005222 ORTHO05D006230 1.3e-18 96.3 66 62.1
Os08g0535600 Oryza sativa ssp. japonica HOM05D005222 ORTHO05D006230 1.3e-18 96.3 62 67.7
SMO356G0192 Selaginella moellendorffii HOM05D005222 ORTHO05D006230 1.3e-18 96.3 59 74.6
Gohir.A12G192500 Gossypium hirsutum HOM05D005222 ORTHO05D006230 1.8e-18 95.9 66 62.1
Medtr3g098820 Medicago truncatula HOM05D005222 ORTHO05D006230 1.8e-18 95.9 66 59.1
Potri.015G102000 Populus trichocarpa HOM05D005222 ORTHO05D006230 1.8e-18 95.9 66 62.1
AT5G50810 Arabidopsis thaliana HOM05D005222 ORTHO05D006230 2.3e-18 95.5 63 63.5
CSS0034357 Camellia sinensis var. sinensis HOM05D005222 ORTHO05D006230 3.0e-18 95.1 64 64.1
FAN18G1799 Fragaria x ananassa HOM05D005222 ORTHO05D006230 3.0e-18 95.1 63 65.1
Glyma.04G198900 Glycine max HOM05D005222 ORTHO05D006230 3.0e-18 95.1 66 62.1
Phvul.009G163100 Phaseolus vulgaris HOM05D005222 ORTHO05D006230 3.0e-18 95.1 66 62.1
PGR083G1056 Punica granatum HOM05D005222 ORTHO05D006230 3.0e-18 95.1 62 64.5
unitig_0.g1255 Utricularia gibba HOM05D005222 ORTHO05D006230 3.0e-18 95.1 62 62.9
arahy.Tifrunner.gnm1.ann1.122S7D Arachis hypogaea HOM05D005222 ORTHO05D006230 3.9e-18 94.7 66 63.6
CANSAT80G0210 Cannabis sativa HOM05D005222 ORTHO05D006230 3.9e-18 94.7 64 59.4
Lalb_Chr08g0237411 Lupinus albus HOM05D005222 ORTHO05D006230 3.9e-18 94.7 66 60.6
Nitab4.5_0000033g0050 Nicotiana tabacum HOM05D005222 ORTHO05D006230 3.9e-18 94.7 63 65.1
TAR629G0657 Trochodendron aralioides HOM05D005222 ORTHO05D006230 3.9e-18 94.7 63 65.1
Zm00001eb036900 Zea mays HOM05D005222 ORTHO05D006230 3.9e-18 94.7 62 67.7
CSS0012412 Camellia sinensis var. sinensis HOM05D005222 ORTHO05D006230 5.1e-18 94.4 61 65.6
Gohir.D12G194600 Gossypium hirsutum HOM05D005222 ORTHO05D006230 5.1e-18 94.4 66 60.6
vmacro16739 Vaccinium macrocarpon HOM05D005222 ORTHO05D006230 5.1e-18 94.4 62 67.7
Zm00001eb175490 Zea mays HOM05D005222 ORTHO05D006230 5.1e-18 94.4 59 71.2
CAN.G758.13 Capsicum annuum HOM05D005222 ORTHO05D006230 6.7e-18 94.0 64 62.5
CsaV3_1G000290 Cucumis sativus L. HOM05D005222 ORTHO05D006230 6.7e-18 94.0 63 63.5
Migut.D01295 Erythranthe guttata HOM05D005222 ORTHO05D006230 6.7e-18 94.0 62 64.5
Nitab4.5_0011312g0030 Nicotiana tabacum HOM05D005222 ORTHO05D006230 6.7e-18 94.0 66 59.1
Rhsim12G0178200 Rhododendron simsii HOM05D005222 ORTHO05D006230 6.7e-18 94.0 64 65.6
ClCG06G018150 Citrullus lanatus HOM05D005222 ORTHO05D006230 8.7e-18 93.6 64 60.9
Eucgr.B00077 Eucalyptus grandis HOM05D005222 ORTHO05D006230 8.7e-18 93.6 63 63.5
HanXRQChr09g0273701 Helianthus annuus HOM05D005222 ORTHO05D006230 8.7e-18 93.6 64 62.5
Gorai.008G209300 Gossypium raimondii HOM05D005222 ORTHO05D006230 1.1e-17 93.2 63 63.5
Sabra12G0075900 Salix brachista HOM05D005222 ORTHO05D006230 1.1e-17 93.2 66 60.6
TAR374G1676 Trochodendron aralioides HOM05D005222 ORTHO05D006230 1.1e-17 93.2 66 60.6
CSS0000670 Camellia sinensis var. sinensis HOM05D005222 ORTHO05D006230 1.5e-17 92.8 61 63.9
AUR62029544 Chenopodium quinoa HOM05D005222 ORTHO05D006230 1.5e-17 92.8 64 60.9
AUR62034814 Chenopodium quinoa HOM05D005222 ORTHO05D006230 1.5e-17 92.8 64 60.9
ECA232G5061 Erigeron canadensis HOM05D005222 ORTHO05D006230 1.5e-17 92.8 64 59.4
TPR.G21582 Trifolium pratense HOM05D005222 ORTHO05D006230 1.5e-17 92.8 66 59.1
FAN04G2766 Fragaria x ananassa HOM05D005222 ORTHO05D006230 2.5e-17 92.0 63 61.9
Lsat_1_v5_gn_4_83361 Lactuca sativa HOM05D005222 ORTHO05D006230 2.5e-17 92.0 64 60.9
arahy.Tifrunner.gnm1.ann1.5QWD0G Arachis hypogaea HOM05D005222 ORTHO05D006230 3.3e-17 91.7 66 60.6
Lj1g0004473 Lotus japonicus HOM05D005222 ORTHO05D006230 3.3e-17 91.7 66 59.1
Potri.012G103400 Populus trichocarpa HOM05D005222 ORTHO05D006230 3.3e-17 91.7 66 59.1
PGSC0003DMG400004338 Solanum tuberosum HOM05D005222 ORTHO05D006230 3.3e-17 91.7 64 60.9
MELO3C026182.2 Cucumis melo HOM05D005222 ORTHO05D006230 4.3e-17 91.3 60 65.0
Manes.14G047400 Manihot esculenta HOM05D005222 ORTHO05D006230 4.3e-17 91.3 66 59.1
CARHR232420 Cardamine hirsuta HOM05D005222 ORTHO05D006230 5.7e-17 90.9 63 61.9
QL05p049336 Quercus lobata HOM05D005222 ORTHO05D006230 9.7e-17 90.1 65 61.5
QL10p001732 Quercus lobata HOM05D005222 ORTHO05D006230 9.7e-17 90.1 65 61.5
Sp6g12920 Schrenkiella parvula HOM05D005222 ORTHO05D006230 9.7e-17 90.1 63 61.9
Sopen03g028390 Solanum pennellii HOM05D005222 ORTHO05D006230 9.7e-17 90.1 64 59.4
CARHR257460 Cardamine hirsuta HOM05D005222 ORTHO05D006230 1.6e-16 89.4 61 62.3
Lj4g0026334 Lotus japonicus HOM05D005222 ORTHO05D006230 3.7e-16 88.2 66 57.6
Thhalv10015178m.g Eutrema salsugineum HOM05D005222 ORTHO05D006230 4.8e-16 87.8 63 60.3
ClCG04G004850 Citrullus lanatus HOM05D005222 ORTHO05D006230 8.2e-16 87.0 60 60.0
COL.COLO4_16662 Corchorus olitorius HOM05D005222 ORTHO05D006230 8.2e-16 87.0 57 66.7
SalBow5G1462 Salvia bowleyana HOM05D005222 ORTHO05D006230 8.2e-16 87.0 60 58.3
Solyc03g097640.3 Solanum lycopersicum HOM05D005222 ORTHO05D006230 1.1e-15 86.7 60 60.0
C06p12810 Brassica napus HOM05D005222 ORTHO05D006230 1.4e-15 86.3 65 53.8
AL8G24980 Arabidopsis lyrata HOM05D005222 ORTHO05D006230 1.8e-15 85.9 54 64.8
CAN.G101.22 Capsicum annuum HOM05D005222 ORTHO05D006230 1.8e-15 85.9 55 69.1
Sc07g0003580 Simmondsia chinensis HOM05D005222 ORTHO05D006230 1.8e-15 85.9 66 56.1
MBI13_g38964_MAGBIO Magnolia biondii HOM05D005222 ORTHO05D006230 3.1e-15 85.1 64 56.2
BcaC09g50823 Brassica carinata HOM05D005222 ORTHO05D006230 4.1e-15 84.7 63 57.1
C01p20320 Brassica napus HOM05D005222 ORTHO05D006230 4.1e-15 84.7 63 57.1
BolC1t01961H Brassica oleracea HOM05D005222 ORTHO05D006230 4.1e-15 84.7 63 57.1
BcaNung03992 Brassica carinata HOM05D005222 ORTHO05D006230 9.0e-15 83.6 63 55.6
Glyma.05G202400 Glycine max HOM05D005222 ORTHO05D006230 9.0e-15 83.6 66 54.5
VMungo0464G1435 Vigna mungo HOM05D005222 ORTHO05D006230 9.0e-15 83.6 57 63.2
Aqoxy5G03239 Aquilegia oxysepala HOM05D005222 ORTHO05D006230 1.2e-14 83.2 63 55.6
A01p16290 Brassica napus HOM05D005222 ORTHO05D006230 1.2e-14 83.2 63 55.6
BraA01t01568Z Brassica rapa HOM05D005222 ORTHO05D006230 1.2e-14 83.2 63 55.6
Aqoxy3G01691 Aquilegia oxysepala HOM05D005222 ORTHO05D006230 1.5e-14 82.8 70 51.4
BcaC08g43896 Brassica carinata HOM05D005222 ORTHO05D006230 2.6e-14 82.0 60 56.7
ATR1096G067 Amborella trichopoda HOM05D005222 ORTHO05D006230 7.7e-14 80.5 61 54.1
Psat5g053520 Pisum sativum HOM05D001135 ORTHO05D006230 7.7e-14 80.5 53 60.4
Os11g0131700 Oryza sativa ssp. japonica HOM05D005222 ORTHO05D006230 1.7e-13 79.3 58 60.3
Os12g0128600 Oryza sativa ssp. japonica HOM05D005222 ORTHO05D006230 1.7e-13 79.3 58 60.3
A03p16580 Brassica napus HOM05D005222 ORTHO05D006230 3.8e-13 78.2 62 54.8
C03p19510 Brassica napus HOM05D005222 ORTHO05D006230 3.8e-13 78.2 62 54.8
BolC3t14332H Brassica oleracea HOM05D005222 ORTHO05D006230 3.8e-13 78.2 62 54.8
BraA03t10945Z Brassica rapa HOM05D005222 ORTHO05D006230 3.8e-13 78.2 62 54.8
Nn7g37129 Nelumbo nucifera HOM05D005222 ORTHO05D006230 3.8e-13 78.2 52 61.5
Zm00001eb163550 Zea mays HOM05D005222 ORTHO05D006230 5.0e-13 77.8 59 57.6
MCO14G257 Micromonas commoda HOM05D005222 ORTHO05D006230 2.7e-11 72.0 60 55.0
HPP92_001283 Vanilla planifolia HOM05D005222 ORTHO05D006230 6.1e-11 70.9 59 49.2
AagrBONN_evm.TU.Sc2ySwM_362.856 Anthoceros agrestis HOM05D005222 ORTHO05D006230 1.1e-09 66.6 38 76.3
FvH4_5g07110 Fragaria vesca HOM05D005222 ORTHO05D006230 8.2e-08 60.5 54 50.0
FAN08G2230 Fragaria x ananassa HOM05D005222 ORTHO05D006230 1.5e-06 56.2 68 39.7
PRCOL_00002805 Prasinoderma coloniale HOM05D003727 ORTHO05D034196 7.7e-06 53.9 66 36.4


User provided reference genes

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