Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c18_13530 Physcomitrium patens HOM05D007670 ORTHO05D009646 0.0e+00 2409.4 1326 100.0
Pp3c21_7410 Physcomitrium patens HOM05D007670 ORTHO05D009646 9.8e-248 861.3 1216 46.9
Pp3c11_2120 Physcomitrium patens HOM05D007670 ORTHO05D009646 1.0e-135 489.2 932 40.0
Pp3c7_23860 Physcomitrium patens HOM05D007670 ORTHO05D009646 2.3e-55 222.2 313 39.6
Pp3c10_12340 Physcomitrium patens HOM05D007670 ORTHO05D009646 6.1e-40 171.0 225 39.1
Pp3c26_6480 Physcomitrium patens HOM05D007670 ORTHO05D009646 1.0e-39 170.2 244 36.5
Pp3c26_6484 Physcomitrium patens HOM05D007670 ORTHO05D009646 1.0e-39 170.2 244 36.5
SEGI_28887 Sequoiadendron giganteum HOM05D007670 ORTHO05D009646 7.7e-35 154.1 237 37.1
PGR044G2723 Punica granatum HOM05D007670 ORTHO05D009646 2.3e-31 142.5 303 33.7
Eucgr.K02784 Eucalyptus grandis HOM05D007670 ORTHO05D009646 1.5e-30 139.8 250 35.2
Atru.chr9.2593 Acer truncatum HOM05D007670 ORTHO05D009646 7.4e-30 137.5 231 35.1
Cfa019228 Carpinus fangiana HOM05D007670 ORTHO05D009646 1.1e-28 133.7 314 31.8
Cc04_g11380 Coffea canephora HOM05D007670 ORTHO05D009646 2.4e-28 132.5 302 31.8
Migut.O00167 Erythranthe guttata HOM05D007670 ORTHO05D009646 2.4e-28 132.5 248 35.1
Manes.06G111300 Manihot esculenta HOM05D007670 ORTHO05D009646 9.1e-28 130.6 204 37.7
HPP92_001311 Vanilla planifolia HOM05D007670 ORTHO05D009646 9.1e-28 130.6 226 36.3
Aqoxy3G01244 Aquilegia oxysepala HOM05D007670 ORTHO05D009646 1.6e-27 129.8 244 33.6
ATR0824G010 Amborella trichopoda HOM05D007670 ORTHO05D009646 2.6e-27 129.0 296 32.4
ClCG03G003050 Citrullus lanatus HOM05D007670 ORTHO05D009646 2.6e-27 129.0 223 34.5
Prupe.5G164600 Prunus persica HOM05D007670 ORTHO05D009646 2.6e-27 129.0 228 33.3
Actinidia08035 Actinidia chinensis HOM05D007670 ORTHO05D009646 5.9e-27 127.9 317 31.9
Sed0003800 Sechium edule HOM05D007670 ORTHO05D009646 1.3e-26 126.7 296 31.4
Ciclev10024352m.g Citrus clementina HOM05D007670 ORTHO05D009646 1.7e-26 126.3 298 31.5
CANSAT80G0945 Cannabis sativa HOM05D007670 ORTHO05D009646 2.2e-26 125.9 297 33.7
FAN13G0035 Fragaria x ananassa HOM05D007670 ORTHO05D009646 3.8e-26 125.2 235 32.3
Gohir.A03G074800 Gossypium hirsutum HOM05D007670 ORTHO05D009646 5.0e-26 124.8 306 30.7
MD14G1170500 Malus domestica HOM05D007670 ORTHO05D009646 8.5e-26 124.0 249 32.1
Sopen03g031210 Solanum pennellii HOM05D007670 ORTHO05D009646 1.1e-25 123.6 305 31.8
HPP92_003438 Vanilla planifolia HOM05D001493 ORTHO05D001681 1.1e-25 123.6 223 37.2
ECA246G3610 Erigeron canadensis HOM05D007670 ORTHO05D009646 1.5e-25 123.2 296 32.8
TWI23G1319 Tripterygium wilfordii HOM05D007670 ORTHO05D009646 1.9e-25 122.9 276 32.6
Lsat_1_v5_gn_5_13921 Lactuca sativa HOM05D007670 ORTHO05D009646 2.5e-25 122.5 229 32.3
FAN04G2873 Fragaria x ananassa HOM05D007670 ORTHO05D009646 4.2e-25 121.7 276 30.1
FAN18G1020 Fragaria x ananassa HOM05D007670 ORTHO05D009646 4.2e-25 121.7 296 29.1
FAN08G1903 Fragaria x ananassa HOM05D007670 ORTHO05D009646 5.5e-25 121.3 296 29.1
FvH4_5g06391 Fragaria vesca HOM05D007670 ORTHO05D009646 7.2e-25 120.9 296 29.1
RcHm_v2.0_Chr7g0192411 Rosa chinensis HOM05D007670 ORTHO05D009646 7.2e-25 120.9 396 25.5
PSO478G3950 Papaver somniferum HOM05D007670 ORTHO05D009646 2.1e-24 119.4 296 31.1
CiPaw.12G031800 Carya illinoinensis HOM05D007670 ORTHO05D009646 3.6e-24 118.6 205 37.6
Thecc.03G116000 Theobroma cacao HOM05D007670 ORTHO05D009646 4.7e-24 118.2 297 30.3
Nitab4.5_0008913g0020 Nicotiana tabacum HOM05D007670 ORTHO05D009646 6.1e-24 117.9 309 30.7
DCAR_007451 Daucus carota HOM05D007670 ORTHO05D009646 8.0e-24 117.5 279 30.1
PGSC0003DMG400018192 Solanum tuberosum HOM05D007670 ORTHO05D009646 8.0e-24 117.5 263 31.9
TAR629G1516 Trochodendron aralioides HOM05D007670 ORTHO05D009646 8.0e-24 117.5 255 32.9
Zm00001eb388830 Zea mays HOM05D007670 ORTHO05D009646 1.8e-23 116.3 218 34.4
Ca_19420_v3 Cicer arietinum L. HOM05D007670 ORTHO05D009646 2.3e-23 115.9 267 30.7
TWI39G0169 Tripterygium wilfordii HOM05D007670 ORTHO05D009646 2.3e-23 115.9 275 30.9
Glyma.05G042100 Glycine max HOM05D007670 ORTHO05D009646 4.0e-23 115.2 297 30.6
Nitab4.5_0002522g0060 Nicotiana tabacum HOM05D007670 ORTHO05D009646 4.0e-23 115.2 306 30.4
COL.COLO4_33501 Corchorus olitorius HOM05D007670 ORTHO05D009646 8.8e-23 114.0 299 29.4
Lj5C130G15 Lonicera japonica HOM05D007670 ORTHO05D009646 1.2e-22 113.6 292 28.8
GSVIVG01007632001 Vitis vinifera HOM05D007670 ORTHO05D009646 1.2e-22 113.6 293 31.4
Lj4g0014046 Lotus japonicus HOM05D007670 ORTHO05D009646 1.5e-22 113.2 279 31.5
Potri.015G084300 Populus trichocarpa HOM05D007670 ORTHO05D009646 1.5e-22 113.2 293 30.0
Peaxi162Scf00089g01230 Petunia axillaris HOM05D007670 ORTHO05D009646 2.6e-22 112.5 190 35.8
TPR.G37476 Trifolium pratense HOM05D007670 ORTHO05D009646 2.6e-22 112.5 238 30.3
MELO3C002304.2 Cucumis melo HOM05D007670 ORTHO05D009646 3.3e-22 112.1 268 29.9
Medtr4g104750 Medicago truncatula HOM05D007670 ORTHO05D009646 3.3e-22 112.1 303 29.7
Gohir.D03G101500 Gossypium hirsutum HOM05D007670 ORTHO05D009646 1.3e-21 110.2 191 33.5
Hma1.2p1_1092F.1_g255930 Hydrangea macrophylla HOM05D007670 ORTHO05D009646 1.3e-21 110.2 240 31.2
VMungo1215G0346 Vigna mungo HOM05D007670 ORTHO05D009646 1.3e-21 110.2 267 30.0
Gorai.003G106900 Gossypium raimondii HOM05D007670 ORTHO05D009646 2.2e-21 109.4 191 33.5
Mapoly0020s0028 Marchantia polymorpha HOM05D007670 ORTHO05D009646 2.2e-21 109.4 188 35.1
SalBow5G0325 Salvia bowleyana HOM05D007670 ORTHO05D009646 2.8e-21 109.0 288 29.5
SalBow5G5044 Salvia bowleyana HOM05D007670 ORTHO05D009646 2.8e-21 109.0 288 29.5
arahy.Tifrunner.gnm1.ann1.2S9CTF Arachis hypogaea HOM05D007670 ORTHO05D009646 4.8e-21 108.2 332 28.0
arahy.Tifrunner.gnm1.ann1.4HF9FM Arachis hypogaea HOM05D007670 ORTHO05D009646 1.4e-20 106.7 308 28.2
Psat4g061560 Pisum sativum HOM05D007670 ORTHO05D009646 2.4e-20 105.9 265 29.8
Phvul.003G205800 Phaseolus vulgaris HOM05D007670 ORTHO05D009646 9.1e-20 104.0 272 29.0
Solyc03g112120.3 Solanum lycopersicum HOM05D007670 ORTHO05D009646 8.5e-18 97.4 263 31.6
Zm00001eb143920 Zea mays HOM05D007670 ORTHO05D009646 3.2e-17 95.5 205 32.2
HanXRQChr05g0156201 Helianthus annuus HOM05D007670 ORTHO05D009646 2.7e-16 92.4 176 34.7
SMO118G0556 Selaginella moellendorffii HOM05D007837 ORTHO05D009965 2.7e-16 92.4 204 31.9
Os01g0909300 Oryza sativa ssp. japonica HOM05D007670 ORTHO05D009646 6.1e-16 91.3 161 32.3
SEGI_16109 Sequoiadendron giganteum HOM05D007837 ORTHO05D009965 1.8e-15 89.7 248 27.8
Zm00001eb393770 Zea mays HOM05D007670 ORTHO05D009646 3.0e-15 89.0 159 33.3
Thecc.06G015600 Theobroma cacao HOM05D007837 ORTHO05D009965 4.0e-15 88.6 348 25.0
AagrBONN_evm.TU.Sc2ySwM_228.3840 Anthoceros agrestis HOM05D007837 ORTHO05D009965 6.8e-15 87.8 249 26.9
MELO3C007007.2 Cucumis melo HOM05D007837 ORTHO05D009965 2.0e-14 86.3 238 27.7
Dinv06743 Davidia involucrata HOM05D007837 ORTHO05D009965 2.0e-14 86.3 234 26.9
CsaV3_6G053020 Cucumis sativus L. HOM05D007837 ORTHO05D009965 2.6e-14 85.9 239 27.2
Gorai.009G117500 Gossypium raimondii HOM05D007837 ORTHO05D009965 5.7e-14 84.7 234 26.9
DCAR_001340 Daucus carota HOM05D007837 ORTHO05D009965 9.8e-14 84.0 245 26.9
Gohir.A05G113000 Gossypium hirsutum HOM05D007837 ORTHO05D009965 2.2e-13 82.8 234 27.4
PSO541G2349 Papaver somniferum HOM05D007837 ORTHO05D009965 2.8e-13 82.4 234 26.5
Sed0012016 Sechium edule HOM05D007837 ORTHO05D009965 2.8e-13 82.4 237 27.0
Cpa.g.sc192.12 Carica papaya HOM05D007837 ORTHO05D009965 3.7e-13 82.0 232 26.7
Gohir.D05G113500 Gossypium hirsutum HOM05D007837 ORTHO05D009965 3.7e-13 82.0 234 26.9
ClCG01G025810 Citrullus lanatus HOM05D007837 ORTHO05D009965 6.3e-13 81.3 234 25.2
COL.COLO4_22875 Corchorus olitorius HOM05D007837 ORTHO05D009965 8.3e-13 80.9 234 26.9
Potri.011G153800 Populus trichocarpa HOM05D007837 ORTHO05D009965 1.8e-12 79.7 235 26.8
Migut.M01930 Erythranthe guttata HOM05D007837 ORTHO05D009965 2.4e-12 79.3 226 25.7
PSO675G4978 Papaver somniferum HOM05D007837 ORTHO05D009965 4.1e-12 78.6 234 25.2
Sopen02g018680 Solanum pennellii HOM05D007837 ORTHO05D009965 4.1e-12 78.6 240 25.0
Duzib160G0902 Durio zibethinus HOM05D007837 ORTHO05D009965 5.4e-12 78.2 234 26.5
Solyc02g069550.1 Solanum lycopersicum HOM05D007837 ORTHO05D009965 5.4e-12 78.2 252 24.6
VMungo1127G0844 Vigna mungo HOM05D007837 ORTHO05D009965 7.0e-12 77.8 220 25.9
Aqoxy3G03542 Aquilegia oxysepala HOM05D007837 ORTHO05D009965 9.1e-12 77.4 235 25.5
Manes.16G061400 Manihot esculenta HOM05D007837 ORTHO05D009965 2.0e-11 76.3 240 24.6
SEGI_38678 Sequoiadendron giganteum HOM05D007670 ORTHO05D009646 2.0e-11 76.3 115 40.0
Cc09_g07320 Coffea canephora HOM05D007837 ORTHO05D009965 2.7e-11 75.9 234 25.6
Lj1A1155T50 Lonicera japonica HOM05D007837 ORTHO05D009965 3.5e-11 75.5 234 23.9
TWI15G0587 Tripterygium wilfordii HOM05D007837 ORTHO05D009965 3.5e-11 75.5 231 24.2
CANSAT35G1648 Cannabis sativa HOM05D007837 ORTHO05D009965 4.5e-11 75.1 248 25.8
SalBow8G2294 Salvia bowleyana HOM05D007837 ORTHO05D009965 4.5e-11 75.1 233 25.3
SalBow8G2521 Salvia bowleyana HOM05D007837 ORTHO05D009965 4.5e-11 75.1 233 25.3
QL10p006759 Quercus lobata HOM05D007670 ORTHO05D009646 5.9e-11 74.7 223 28.7
CSS0012057 Camellia sinensis var. sinensis HOM05D007837 ORTHO05D009965 7.7e-11 74.3 234 25.6
Glyma.12G002600 Glycine max HOM05D007837 ORTHO05D009965 7.7e-11 74.3 236 25.4
Nitab4.5_0001219g0090 Nicotiana tabacum HOM05D007837 ORTHO05D009965 7.7e-11 74.3 238 24.4
Peaxi162Scf00195g00413 Petunia axillaris HOM05D007837 ORTHO05D009965 1.0e-10 73.9 240 23.8
Dinv15942 Davidia involucrata HOM05D007837 ORTHO05D009965 1.3e-10 73.6 274 24.8
TAR626G0822 Trochodendron aralioides HOM05D007837 ORTHO05D009965 1.3e-10 73.6 245 24.5
Actinidia24601 Actinidia chinensis HOM05D007670 ORTHO05D009646 1.7e-10 73.2 128 32.0
Lj3g0012849 Lotus japonicus HOM05D007837 ORTHO05D009965 1.7e-10 73.2 233 23.6
Phvul.011G003300 Phaseolus vulgaris HOM05D007837 ORTHO05D009965 1.7e-10 73.2 218 23.9
Ciclev10017939m.g Citrus clementina HOM05D007837 ORTHO05D009965 2.3e-10 72.8 250 26.0
Oeu008970.1 Olea europaea HOM05D007837 ORTHO05D009965 2.9e-10 72.4 233 25.3
Atru.chr10.652 Acer truncatum HOM05D007837 ORTHO05D009965 5.0e-10 71.6 246 25.2
PGR042G0413 Punica granatum HOM05D007837 ORTHO05D009965 8.6e-10 70.9 234 25.6
Actinidia33640 Actinidia chinensis HOM05D007837 ORTHO05D009965 2.5e-09 69.3 234 23.1
Cpa.g.sc159.12 Carica papaya HOM05D007670 ORTHO05D009646 3.3e-09 68.9 121 35.5
Glyma.17G124700 Glycine max HOM05D007670 ORTHO05D009646 3.3e-09 68.9 216 29.6
Psat7g145400 Pisum sativum HOM05D007837 ORTHO05D009965 3.3e-09 68.9 232 25.4
Lsat_1_v5_gn_1_90680 Lactuca sativa HOM05D007837 ORTHO05D001664 5.5e-09 68.2 232 24.1
ATR1098G128 Amborella trichopoda HOM05D007837 ORTHO05D009965 7.2e-09 67.8 229 25.8
Potri.001G443025 Populus trichocarpa HOM05D007837 ORTHO05D009965 2.1e-08 66.2 228 24.6
RcHm_v2.0_Chr5g0018641 Rosa chinensis HOM05D007837 ORTHO05D009965 2.1e-08 66.2 246 23.2
Dinv20593 Davidia involucrata HOM05D007670 ORTHO05D009646 2.8e-08 65.9 105 36.2


User provided reference genes

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