Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c18_13310 Physcomitrium patens HOM05D000842 ORTHO05D000650 5.6e-19 96.7 51 100.0
AagrBONN_evm.TU.Sc2ySwM_228.3775 Anthoceros agrestis HOM05D000842 ORTHO05D000650 1.7e-12 75.1 47 83.0
Pp3c3_24050 Physcomitrium patens HOM05D000842 ORTHO05D000650 3.3e-11 70.9 48 77.1
SEGI_02504 Sequoiadendron giganteum HOM05D000842 ORTHO05D000650 5.6e-11 70.1 44 81.8
Nn3g17833 Nelumbo nucifera HOM05D000842 ORTHO05D000650 1.4e-09 65.5 46 73.9
Nn3g17835 Nelumbo nucifera HOM05D000842 ORTHO05D000650 1.4e-09 65.5 46 73.9
ATR0307G011 Amborella trichopoda HOM05D000842 ORTHO05D000650 1.8e-09 65.1 44 75.0
MBI03_g33624_MAGBIO Magnolia biondii HOM05D000842 ORTHO05D000650 2.4e-09 64.7 46 73.9
TAR622G0105 Trochodendron aralioides HOM05D000842 ORTHO05D000650 5.3e-09 63.5 46 69.6
Dinv21087 Davidia involucrata HOM05D000842 ORTHO05D000650 1.2e-08 62.4 45 71.1
Nn2g14738 Nelumbo nucifera HOM05D000842 ORTHO05D000650 1.2e-08 62.4 44 72.7
SEGI_10988 Sequoiadendron giganteum HOM05D000842 ORTHO05D000650 1.2e-08 62.4 46 69.6
CANSAT64G1462 Cannabis sativa HOM05D000842 ORTHO05D000650 1.5e-08 62.0 44 75.0
Nn2g10984 Nelumbo nucifera HOM05D000842 ORTHO05D000650 2.0e-08 61.6 44 72.7
GSVIVG01011898001 Vitis vinifera HOM05D000842 ORTHO05D000650 2.6e-08 61.2 45 66.7
CDE08G1357 Ceratophyllum demersum HOM05D000842 ORTHO05D000650 3.4e-08 60.8 44 70.5
TAR633G2814 Trochodendron aralioides HOM05D000842 ORTHO05D000650 3.4e-08 60.8 44 70.5
DCAR_007618 Daucus carota HOM05D000842 ORTHO05D000650 4.4e-08 60.5 44 72.7
Hma1.2p1_0061F.1_g033940 Hydrangea macrophylla HOM05D000842 ORTHO05D000650 4.4e-08 60.5 43 67.4
Manes.11G027300 Manihot esculenta HOM05D000842 ORTHO05D000650 4.4e-08 60.5 48 64.6
QL05p014694 Quercus lobata HOM05D000842 ORTHO05D000650 4.4e-08 60.5 44 70.5
HPP92_026124 Vanilla planifolia HOM05D000842 ORTHO05D000650 4.4e-08 60.5 46 67.4
Ciclev10026255m.g Citrus clementina HOM05D000842 ORTHO05D000650 5.8e-08 60.1 44 72.7
DCAR_026382 Daucus carota HOM05D000842 ORTHO05D000650 5.8e-08 60.1 44 72.7
Dinv37922 Davidia involucrata HOM05D000842 ORTHO05D000650 5.8e-08 60.1 44 70.5
MBI16_g36639_MAGBIO Magnolia biondii HOM05D000842 ORTHO05D000650 5.8e-08 60.1 44 72.7
Pp3c8_1900 Physcomitrium patens HOM05D000842 ORTHO05D000650 5.8e-08 60.1 48 64.6
ClCG08G005330 Citrullus lanatus HOM05D000842 ORTHO05D000650 7.6e-08 59.7 49 61.2
MELO3C011573.2 Cucumis melo HOM05D000842 ORTHO05D000650 7.6e-08 59.7 49 61.2
MD16G1043100 Malus domestica HOM05D000842 ORTHO05D000650 7.6e-08 59.7 43 67.4
Rhsim12G0205300 Rhododendron simsii HOM05D000842 ORTHO05D000650 7.6e-08 59.7 44 70.5
Sed0000394 Sechium edule HOM05D000842 ORTHO05D000650 7.6e-08 59.7 49 59.2
CSS0009776 Camellia sinensis var. sinensis HOM05D000842 ORTHO05D000650 9.9e-08 59.3 44 70.5
Hma1.2p1_0388F.1_g142260 Hydrangea macrophylla HOM05D000842 ORTHO05D000650 9.9e-08 59.3 43 72.1
Hma1.2p1_1116F.1_g258940 Hydrangea macrophylla HOM05D000842 ORTHO05D000650 9.9e-08 59.3 45 68.9
Lsat_1_v5_gn_1_36001 Lactuca sativa HOM05D000842 ORTHO05D000650 9.9e-08 59.3 43 69.8
MD13G1042300 Malus domestica HOM05D000842 ORTHO05D000650 9.9e-08 59.3 45 64.4
Rhsim09G0108200 Rhododendron simsii HOM05D000842 ORTHO05D000650 9.9e-08 59.3 45 64.4
TAR383G0159 Trochodendron aralioides HOM05D000842 ORTHO05D000650 9.9e-08 59.3 44 70.5
Actinidia09026 Actinidia chinensis HOM05D000842 ORTHO05D000650 1.3e-07 58.9 44 70.5
Actinidia39116 Actinidia chinensis HOM05D000842 ORTHO05D000650 1.3e-07 58.9 44 70.5
Haze_15940 Corylus avellana HOM05D000842 ORTHO05D000650 1.3e-07 58.9 41 73.2
Dinv30387 Davidia involucrata HOM05D000842 ORTHO05D000650 1.3e-07 58.9 44 68.2
TAR383G0631 Trochodendron aralioides HOM05D000842 ORTHO05D000650 1.3e-07 58.9 44 68.2
Atru.chr1.3678 Acer truncatum HOM05D000842 ORTHO05D000650 1.7e-07 58.5 46 69.6
Actinidia34476 Actinidia chinensis HOM05D000842 ORTHO05D000650 1.7e-07 58.5 46 65.2
CsaV3_6G003520 Cucumis sativus L. HOM05D000842 ORTHO05D000650 1.7e-07 58.5 49 59.2
Dinv31639 Davidia involucrata HOM05D000842 ORTHO05D000650 1.7e-07 58.5 45 64.4
Lj1A127G60 Lonicera japonica HOM05D000842 ORTHO05D000650 1.7e-07 58.5 46 65.2
MD17G1175100 Malus domestica HOM05D000842 ORTHO05D000650 1.7e-07 58.5 44 70.5
Manes.04G139000 Manihot esculenta HOM05D000842 ORTHO05D000650 1.7e-07 58.5 47 63.8
Nn6g34387 Nelumbo nucifera HOM05D000842 ORTHO05D000650 1.7e-07 58.5 46 67.4
TAR371G0119 Trochodendron aralioides HOM05D000842 ORTHO05D000650 1.7e-07 58.5 46 65.2
TAR624G1368 Trochodendron aralioides HOM05D000842 ORTHO05D000650 1.7e-07 58.5 44 68.2
AUR62002868 Chenopodium quinoa HOM05D000842 ORTHO05D000650 2.2e-07 58.2 43 65.1
Lj5C46T6 Lonicera japonica HOM05D000842 ORTHO05D000650 2.2e-07 58.2 44 68.2
Nn6g35459 Nelumbo nucifera HOM05D000093 ORTHO05D000605 2.2e-07 58.2 44 68.2
HPP92_014257 Vanilla planifolia HOM05D000842 ORTHO05D000650 2.2e-07 58.2 44 70.5
CSS0047783 Camellia sinensis var. sinensis HOM05D000842 ORTHO05D000650 2.9e-07 57.8 45 66.7
CiPaw.01G225800 Carya illinoinensis HOM05D000842 ORTHO05D000650 2.9e-07 57.8 43 67.4
CDE04G0048 Ceratophyllum demersum HOM05D000842 ORTHO05D000650 2.9e-07 57.8 46 67.4
MBI13_g00889_MAGBIO Magnolia biondii HOM05D000842 ORTHO05D000650 2.9e-07 57.8 44 65.9
SGA_v2.0_scaffold45G16978 Striga asiatica HOM05D000842 ORTHO05D000650 2.9e-07 57.8 44 65.9
vmacro16990 Vaccinium macrocarpon HOM05D000842 ORTHO05D000650 2.9e-07 57.8 40 75.0
vmacro22857 Vaccinium macrocarpon HOM05D000842 ORTHO05D000650 2.9e-07 57.8 40 75.0
ATR0680G176 Amborella trichopoda HOM05D000842 ORTHO05D000650 3.8e-07 57.4 43 67.4
CiPaw.02G141000 Carya illinoinensis HOM05D000842 ORTHO05D000650 3.8e-07 57.4 44 65.9
Dinv28686 Davidia involucrata HOM05D000842 ORTHO05D000650 3.8e-07 57.4 46 63.0
Gohir.A02G115500 Gossypium hirsutum HOM05D000842 ORTHO05D000650 3.8e-07 57.4 44 65.9
Gohir.D03G056500 Gossypium hirsutum HOM05D000842 ORTHO05D000650 3.8e-07 57.4 44 65.9
Gorai.003G059600 Gossypium raimondii HOM05D000842 ORTHO05D000650 3.8e-07 57.4 44 65.9
HanXRQChr12g0360621 Helianthus annuus HOM05D000842 ORTHO05D000650 3.8e-07 57.4 42 69.0
RcHm_v2.0_Chr4g0435211 Rosa chinensis HOM05D000842 ORTHO05D000650 3.8e-07 57.4 45 62.2
SEGI_00800 Sequoiadendron giganteum HOM05D000842 ORTHO05D000650 3.8e-07 57.4 44 61.4
CSS0002312 Camellia sinensis var. sinensis HOM05D000842 ORTHO05D000650 4.9e-07 57.0 42 69.0
CSS0040988 Camellia sinensis var. sinensis HOM05D000842 ORTHO05D000650 4.9e-07 57.0 42 69.0
FvH4_4g27400 Fragaria vesca HOM05D000842 ORTHO05D000650 4.9e-07 57.0 45 60.0
FAN12G2018 Fragaria x ananassa HOM05D000842 ORTHO05D000650 4.9e-07 57.0 45 60.0
FAN12G2235 Fragaria x ananassa HOM05D000842 ORTHO05D000650 4.9e-07 57.0 45 60.0
Prupe.1G310800 Prunus persica HOM05D000842 ORTHO05D000650 4.9e-07 57.0 45 62.2
Aqoxy7G04070 Aquilegia oxysepala HOM05D000842 ORTHO05D000650 6.4e-07 56.6 44 63.6
Cc04_g02040 Coffea canephora HOM05D000842 ORTHO05D000650 6.4e-07 56.6 44 65.9
COL.COLO4_30649 Corchorus olitorius HOM05D000842 ORTHO05D000650 6.4e-07 56.6 44 65.9
Glyma.13G350800 Glycine max HOM05D000842 ORTHO05D000650 6.4e-07 56.6 40 72.5
Glyma.15G023600 Glycine max HOM05D000842 ORTHO05D000650 6.4e-07 56.6 40 72.5
QL02p095373 Quercus lobata HOM05D000842 ORTHO05D000650 6.4e-07 56.6 44 68.2
SGA_v2.0_scaffold71G23772 Striga asiatica HOM05D000842 ORTHO05D000650 6.4e-07 56.6 38 78.9
Thecc.06G109500 Theobroma cacao HOM05D000842 ORTHO05D000650 6.4e-07 56.6 44 65.9
CSS0005010 Camellia sinensis var. sinensis HOM05D000842 ORTHO05D000650 8.4e-07 56.2 46 63.0
CSS0029835 Camellia sinensis var. sinensis HOM05D000842 ORTHO05D000650 8.4e-07 56.2 46 63.0
ECA234G1704 Erigeron canadensis HOM05D000842 ORTHO05D000650 8.4e-07 56.2 41 70.7
Prupe.3G051000 Prunus persica HOM05D000842 ORTHO05D000650 8.4e-07 56.2 44 65.9
RcHm_v2.0_Chr2g0142861 Rosa chinensis HOM05D000842 ORTHO05D000650 8.4e-07 56.2 44 68.2
Sabra03G0025600 Salix brachista HOM05D000842 ORTHO05D000650 8.4e-07 56.2 44 65.9
TAR626G0918 Trochodendron aralioides HOM05D000842 ORTHO05D000650 8.4e-07 56.2 44 65.9
vmacro22333 Vaccinium macrocarpon HOM05D000842 ORTHO05D000650 8.4e-07 56.2 44 65.9
GSVIVG01021834001 Vitis vinifera HOM05D000842 ORTHO05D000650 8.4e-07 56.2 44 68.2
arahy.Tifrunner.gnm1.ann1.GZNN80 Arachis hypogaea HOM05D000842 ORTHO05D000650 1.1e-06 55.8 41 70.7
MSTRG.22592 Avicennia marina HOM05D000842 ORTHO05D000650 1.1e-06 55.8 44 65.9
Lsat_1_v5_gn_5_133560 Lactuca sativa HOM05D000842 ORTHO05D000650 1.1e-06 55.8 42 66.7
Lj3g0025148 Lotus japonicus HOM05D000842 ORTHO05D000650 1.1e-06 55.8 40 72.5
Lalb_Chr14g0372831 Lupinus albus HOM05D000842 ORTHO05D000650 1.1e-06 55.8 40 70.0
Nitab4.5_0004364g0040 Nicotiana tabacum HOM05D000250 ORTHO05D000650 1.1e-06 55.8 44 68.2
Rhsim06G0074800 Rhododendron simsii HOM05D000842 ORTHO05D000650 1.1e-06 55.8 44 65.9
Sc12g0010200 Simmondsia chinensis HOM05D000842 ORTHO05D000650 1.1e-06 55.8 44 68.2
vmacro14616 Vaccinium macrocarpon HOM05D000842 ORTHO05D000650 1.1e-06 55.8 46 60.9
GSVIVG01016844001 Vitis vinifera HOM05D000842 ORTHO05D000650 1.1e-06 55.8 44 65.9
Dinv42793 Davidia involucrata HOM05D000842 ORTHO05D000650 1.4e-06 55.5 59 52.5
Dinv43308 Davidia involucrata HOM05D000842 ORTHO05D000650 1.4e-06 55.5 59 52.5
Hma1.2p1_0516F.1_g170560 Hydrangea macrophylla HOM05D000842 ORTHO05D000650 1.4e-06 55.5 44 65.9
Potri.003G037900 Populus trichocarpa HOM05D000842 ORTHO05D000650 1.4e-06 55.5 44 63.6
TAR629G1485 Trochodendron aralioides HOM05D000842 ORTHO05D000650 1.4e-06 55.5 46 63.0
arahy.Tifrunner.gnm1.ann1.22LF0C Arachis hypogaea HOM05D000842 ORTHO05D000650 1.9e-06 55.1 41 68.3
CSS0000737 Camellia sinensis var. sinensis HOM05D000842 ORTHO05D000650 1.9e-06 55.1 46 60.9
Cfa018597 Carpinus fangiana HOM05D000842 ORTHO05D000650 1.9e-06 55.1 45 57.8
Haze_17480 Corylus avellana HOM05D000842 ORTHO05D000650 1.9e-06 55.1 45 57.8
Eucgr.F03229 Eucalyptus grandis HOM05D000842 ORTHO05D000650 1.9e-06 55.1 46 60.9
Gohir.A10G060900 Gossypium hirsutum HOM05D000842 ORTHO05D000650 1.9e-06 55.1 44 65.9
Nn3g20957 Nelumbo nucifera HOM05D000842 ORTHO05D000650 1.9e-06 55.1 43 65.1
PGSC0003DMG400002502 Solanum tuberosum HOM05D000842 ORTHO05D000650 1.9e-06 55.1 44 65.9
GSVIVG01021318001 Vitis vinifera HOM05D000842 ORTHO05D000650 1.9e-06 55.1 46 63.0
Actinidia23867 Actinidia chinensis HOM05D000842 ORTHO05D000650 2.4e-06 54.7 46 60.9
EL10Ac4g08436 Beta vulgaris HOM05D000842 ORTHO05D000650 2.4e-06 54.7 46 63.0
FAN07G1866 Fragaria x ananassa HOM05D000842 ORTHO05D000650 2.4e-06 54.7 45 57.8
Lalb_Chr22g0351761 Lupinus albus HOM05D000842 ORTHO05D000650 2.4e-06 54.7 44 65.9
Peaxi162Scf00038g01435 Petunia axillaris HOM05D000842 ORTHO05D000650 2.4e-06 54.7 44 65.9
Phvul.005G160200 Phaseolus vulgaris HOM05D000842 ORTHO05D000650 2.4e-06 54.7 40 70.0
PGR102G2742 Punica granatum HOM05D000842 ORTHO05D000650 2.4e-06 54.7 43 65.1
Solyc03g121500.3 Solanum lycopersicum HOM05D000842 ORTHO05D000650 2.4e-06 54.7 44 65.9
Sopen03g040310 Solanum pennellii HOM05D000842 ORTHO05D000650 2.4e-06 54.7 44 65.9
vmacro10557 Vaccinium macrocarpon HOM05D000842 ORTHO05D000650 2.4e-06 54.7 43 65.1
VMungo1080G1632 Vigna mungo HOM05D000842 ORTHO05D000650 2.4e-06 54.7 40 70.0
Cpa.g.sc25.65 Carica papaya HOM05D000842 ORTHO05D000650 3.2e-06 54.3 44 65.9
Cc11_g10160 Coffea canephora HOM05D000842 ORTHO05D000650 3.2e-06 54.3 44 63.6
CsaV3_1G036640 Cucumis sativus L. HOM05D000842 ORTHO05D000650 3.2e-06 54.3 46 60.9
Eucgr.J02870 Eucalyptus grandis HOM05D000842 ORTHO05D000650 3.2e-06 54.3 44 65.9
Gohir.D10G062000 Gossypium hirsutum HOM05D000842 ORTHO05D000650 3.2e-06 54.3 44 63.6
Nitab4.5_0005281g0020 Nicotiana tabacum HOM05D000842 ORTHO05D000650 3.2e-06 54.3 44 68.2
RcHm_v2.0_Chr2g0146461 Rosa chinensis HOM05D000842 ORTHO05D000650 3.2e-06 54.3 44 65.9
Ah.04g161920 Amaranthus hybridus HOM05D000842 ORTHO05D000650 4.2e-06 53.9 46 63.0
CAN.G1389.8 Capsicum annuum HOM05D000842 ORTHO05D000650 4.2e-06 53.9 44 61.4
AUR62035222 Chenopodium quinoa HOM05D000842 ORTHO05D000650 4.2e-06 53.9 43 58.1
MELO3C020505.2 Cucumis melo HOM05D000842 ORTHO05D000650 4.2e-06 53.9 46 60.9
QL01p042725 Quercus lobata HOM05D000842 ORTHO05D000650 4.2e-06 53.9 45 57.8
TAR627G1038 Trochodendron aralioides HOM05D000842 ORTHO05D000650 4.2e-06 53.9 46 60.9
arahy.Tifrunner.gnm1.ann1.68BB74 Arachis hypogaea HOM05D000842 ORTHO05D000650 5.4e-06 53.5 46 60.9
arahy.Tifrunner.gnm1.ann1.B9TNKV Arachis hypogaea HOM05D000842 ORTHO05D000650 5.4e-06 53.5 46 60.9
CiPaw.08G001100 Carya illinoinensis HOM05D000842 ORTHO05D000650 5.4e-06 53.5 44 61.4
CiPaw.12G110100 Carya illinoinensis HOM05D000842 ORTHO05D000650 5.4e-06 53.5 46 63.0
CBR_g3067 Chara braunii HOM05D000842 ORTHO05D000650 5.4e-06 53.5 44 61.4
HanXRQChr02g0031721 Helianthus annuus HOM05D000842 ORTHO05D000650 5.4e-06 53.5 43 65.1
SalBow6G4852 Salvia bowleyana HOM05D000842 ORTHO05D000650 5.4e-06 53.5 44 63.6
Thecc.09G158800 Theobroma cacao HOM05D000842 ORTHO05D000650 5.4e-06 53.5 42 64.3
FvH4_6g33160 Fragaria vesca HOM05D000842 ORTHO05D000650 7.1e-06 53.1 40 70.0
FAN14G1725 Fragaria x ananassa HOM05D000842 ORTHO05D000650 7.1e-06 53.1 40 70.0
Gorai.011G066200 Gossypium raimondii HOM05D000842 ORTHO05D000650 7.1e-06 53.1 44 61.4
Medtr2g100240 Medicago truncatula HOM05D000842 ORTHO05D000650 7.1e-06 53.1 40 67.5
Psat5g293360 Pisum sativum HOM05D000842 ORTHO05D000650 7.1e-06 53.1 41 65.9
TPR.G6562 Trifolium pratense HOM05D000842 ORTHO05D000650 7.1e-06 53.1 40 67.5
Actinidia24766 Actinidia chinensis HOM05D000842 ORTHO05D000650 9.3e-06 52.8 44 59.1
Ca_01191_v3 Cicer arietinum L. HOM05D000842 ORTHO05D000650 9.3e-06 52.8 40 67.5
Cc01_g14720 Coffea canephora HOM05D000842 ORTHO05D000650 9.3e-06 52.8 46 58.7
Glyma.01G128750 Glycine max HOM05D000842 ORTHO05D000650 9.3e-06 52.8 40 67.5
MD16G1260800 Malus domestica HOM05D000842 ORTHO05D000650 9.3e-06 52.8 45 57.8
Prupe.1G098700 Prunus persica HOM05D000842 ORTHO05D000650 9.3e-06 52.8 44 59.1
GSVIVG01024666001 Vitis vinifera HOM05D000842 ORTHO05D000650 9.3e-06 52.8 46 58.7


User provided reference genes

Program Settings