Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c18_1330 Physcomitrium patens HOM05D004323 ORTHO05D005140 4.7e-130 468.4 336 100.0
Pp3c21_20610 Physcomitrium patens HOM05D004323 ORTHO05D005140 5.2e-97 358.6 279 79.6
AagrBONN_evm.TU.Sc2ySwM_117.2431 Anthoceros agrestis HOM05D004323 ORTHO05D005140 6.9e-41 172.2 122 68.0
AagrBONN_evm.TU.Sc2ySwM_344.4471 Anthoceros agrestis HOM05D004323 ORTHO05D005140 6.9e-41 172.2 122 68.0
SMO268G0019 Selaginella moellendorffii HOM05D004323 ORTHO05D005140 5.5e-38 162.5 296 49.3
BraA07t31307Z Brassica rapa HOM05D004323 ORTHO05D005140 1.3e-36 157.9 129 62.0
SEGI_02231 Sequoiadendron giganteum HOM05D004323 ORTHO05D005140 8.7e-36 155.2 124 62.9
A07p37500 Brassica napus HOM05D004323 ORTHO05D005140 1.1e-35 154.8 129 60.5
C06p45200 Brassica napus HOM05D004323 ORTHO05D005140 1.9e-35 154.1 130 61.5
BolC6t39576H Brassica oleracea HOM05D004323 ORTHO05D005140 1.9e-35 154.1 130 61.5
Prupe.1G322700 Prunus persica HOM05D004323 ORTHO05D005140 4.8e-34 149.4 132 59.8
Potri.008G127900 Populus trichocarpa HOM05D004323 ORTHO05D005140 6.3e-34 149.1 135 56.3
Sed0006370 Sechium edule HOM05D004323 ORTHO05D005140 6.3e-34 149.1 128 60.9
arahy.Tifrunner.gnm1.ann1.B1S40C Arachis hypogaea HOM05D004323 ORTHO05D005140 1.1e-33 148.3 153 51.0
arahy.Tifrunner.gnm1.ann1.JPDL6B Arachis hypogaea HOM05D004323 ORTHO05D005140 1.1e-33 148.3 153 51.0
Cpa.g.sc65.119 Carica papaya HOM05D004323 ORTHO05D005140 1.4e-33 147.9 131 58.0
Sabra08G0096600 Salix brachista HOM05D004323 ORTHO05D005140 1.4e-33 147.9 129 58.1
CDE09G0723 Ceratophyllum demersum HOM05D004323 ORTHO05D005140 1.8e-33 147.5 131 55.7
TAR622G1143 Trochodendron aralioides HOM05D004323 ORTHO05D005140 1.8e-33 147.5 124 59.7
AL2G30660 Arabidopsis lyrata HOM05D004323 ORTHO05D005140 2.4e-33 147.1 133 57.9
Sp5g26250 Schrenkiella parvula HOM05D004323 ORTHO05D005140 2.4e-33 147.1 117 62.4
Dinv19000 Davidia involucrata HOM05D004323 ORTHO05D005140 3.1e-33 146.7 146 55.5
Dinv33986 Davidia involucrata HOM05D004323 ORTHO05D005140 3.1e-33 146.7 146 55.5
ECA246G3962 Erigeron canadensis HOM05D004323 ORTHO05D005140 3.1e-33 146.7 141 54.6
Mapoly0014s0191 Marchantia polymorpha HOM05D004323 ORTHO05D005140 3.1e-33 146.7 298 43.0
GSVIVG01030895001 Vitis vinifera HOM05D004323 ORTHO05D005140 3.1e-33 146.7 117 63.2
BcaC08g46546 Brassica carinata HOM05D004323 ORTHO05D005140 4.1e-33 146.4 116 62.9
FAN07G1710 Fragaria x ananassa HOM05D004323 ORTHO05D005140 4.1e-33 146.4 115 63.5
Psat7g004960 Pisum sativum HOM05D004323 ORTHO05D005140 4.1e-33 146.4 124 58.1
Atru.chr11.379 Acer truncatum HOM05D004323 ORTHO05D005140 5.3e-33 146.0 133 57.9
Haze_11028 Corylus avellana HOM05D004323 ORTHO05D005140 5.3e-33 146.0 130 59.2
HanXRQChr12g0375961 Helianthus annuus HOM05D004323 ORTHO05D005140 5.3e-33 146.0 121 62.8
Prupe.3G151600 Prunus persica HOM05D004323 ORTHO05D005140 5.3e-33 146.0 132 57.6
Carub.0002s1789 Capsella rubella HOM05D004323 ORTHO05D005140 6.9e-33 145.6 117 61.5
Ciclev10015960m.g Citrus clementina HOM05D004323 ORTHO05D005140 6.9e-33 145.6 129 55.0
Eucgr.C01716 Eucalyptus grandis HOM05D004323 ORTHO05D005140 6.9e-33 145.6 126 58.7
Thhalv10018840m.g Eutrema salsugineum HOM05D004323 ORTHO05D005140 6.9e-33 145.6 117 62.4
RcHm_v2.0_Chr4g0440951 Rosa chinensis HOM05D004323 ORTHO05D005140 6.9e-33 145.6 115 63.5
Manes.15G126000 Manihot esculenta HOM05D004323 ORTHO05D005140 9.0e-33 145.2 131 59.5
Sc14g0004810 Simmondsia chinensis HOM05D004323 ORTHO05D005140 1.2e-32 144.8 144 55.6
Cfa008584 Carpinus fangiana HOM05D004323 ORTHO05D005140 1.5e-32 144.4 130 58.5
FvH4_4g32210 Fragaria vesca HOM05D004323 ORTHO05D005140 1.5e-32 144.4 110 63.6
FAN12G1900 Fragaria x ananassa HOM05D004323 ORTHO05D005140 1.5e-32 144.4 110 63.6
FAN22G0457 Fragaria x ananassa HOM05D004323 ORTHO05D005140 1.5e-32 144.4 110 63.6
Oeu041976.1 Olea europaea HOM05D004323 ORTHO05D005140 1.5e-32 144.4 131 61.8
BcaB03g14869 Brassica carinata HOM05D004323 ORTHO05D005140 2.0e-32 144.1 116 62.1
CANSAT01G2279 Cannabis sativa HOM05D004323 ORTHO05D005140 2.0e-32 144.1 128 55.5
CARHR064370 Cardamine hirsuta HOM05D004323 ORTHO05D005140 2.0e-32 144.1 130 56.9
Cc07_g08280 Coffea canephora HOM05D004323 ORTHO05D005140 2.0e-32 144.1 118 61.0
Lj2C436T13 Lonicera japonica HOM05D004323 ORTHO05D005140 2.0e-32 144.1 133 58.6
Psat7g006200 Pisum sativum HOM05D004323 ORTHO05D005140 2.0e-32 144.1 130 55.4
vmacro05495 Vaccinium macrocarpon HOM05D004323 ORTHO05D005140 2.0e-32 144.1 146 54.1
SalBow1G3118 Salvia bowleyana HOM05D004323 ORTHO05D005140 3.4e-32 143.3 130 56.9
TWI53G1939 Tripterygium wilfordii HOM05D004323 ORTHO05D005140 3.4e-32 143.3 118 60.2
TAR629G2255 Trochodendron aralioides HOM05D004323 ORTHO05D005140 3.4e-32 143.3 134 56.7
Phvul.007G037100 Phaseolus vulgaris HOM05D004323 ORTHO05D005140 4.5e-32 142.9 124 56.5
Potri.010G114900 Populus trichocarpa HOM05D004323 ORTHO05D005140 4.5e-32 142.9 129 55.8
THA.LOC104810161 Tarenaya hassleriana HOM05D004323 ORTHO05D005140 4.5e-32 142.9 135 54.1
VMungo0720G0280 Vigna mungo HOM05D004323 ORTHO05D005140 4.5e-32 142.9 124 55.6
Nn4g24090 Nelumbo nucifera HOM05D004323 ORTHO05D005140 5.9e-32 142.5 124 58.1
Hund14974 Selenicereus undatus HOM05D004323 ORTHO05D005140 5.9e-32 142.5 134 57.5
CiPaw.05G248000 Carya illinoinensis HOM05D004323 ORTHO05D005140 7.7e-32 142.1 127 55.9
Medtr8g105830 Medicago truncatula HOM05D004323 ORTHO05D005140 7.7e-32 142.1 135 55.6
Nn3g18066 Nelumbo nucifera HOM05D004323 ORTHO05D005140 7.7e-32 142.1 123 56.9
QL01p002128 Quercus lobata HOM05D004323 ORTHO05D005140 7.7e-32 142.1 115 60.0
Solyc02g091270.3 Solanum lycopersicum HOM05D004323 ORTHO05D005140 7.7e-32 142.1 132 59.1
Sopen02g035890 Solanum pennellii HOM05D004323 ORTHO05D005140 7.7e-32 142.1 132 59.1
ATR0326G041 Amborella trichopoda HOM05D004323 ORTHO05D005140 1.0e-31 141.7 132 55.3
AT1G71080 Arabidopsis thaliana HOM05D004323 ORTHO05D005140 1.0e-31 141.7 117 59.0
Cfa007861 Carpinus fangiana HOM05D004323 ORTHO05D007831 1.0e-31 141.7 128 58.6
Lj5g0025367 Lotus japonicus HOM05D004323 ORTHO05D005140 1.0e-31 141.7 136 55.9
unitig_748.g8745 Utricularia gibba HOM05D004323 ORTHO05D005140 1.0e-31 141.7 130 58.5
CSS0029895 Camellia sinensis var. sinensis HOM05D004323 ORTHO05D005140 1.3e-31 141.4 128 57.8
CsaV3_5G010330 Cucumis sativus L. HOM05D004323 ORTHO05D005140 1.3e-31 141.4 128 57.0
FAN17G1549 Fragaria x ananassa HOM05D004323 ORTHO05D005140 1.3e-31 141.4 110 62.7
Glyma.10G264800 Glycine max HOM05D004323 ORTHO05D005140 1.3e-31 141.4 124 56.5
Glyma.20G125700 Glycine max HOM05D004323 ORTHO05D005140 1.3e-31 141.4 124 56.5
Lj5g0009857 Lotus japonicus HOM05D004323 ORTHO05D005140 1.3e-31 141.4 136 55.9
PGR004G1785 Punica granatum HOM05D004323 ORTHO05D005140 1.3e-31 141.4 144 52.1
Rhsim10G0078500 Rhododendron simsii HOM05D004323 ORTHO05D005140 1.3e-31 141.4 130 59.2
Sabra10G0085000 Salix brachista HOM05D004323 ORTHO05D005140 1.3e-31 141.4 129 55.8
SGA_v2.0_scaffold174G39287 Striga asiatica HOM05D004323 ORTHO05D005140 1.3e-31 141.4 130 57.7
Ca_17253_v3 Cicer arietinum L. HOM05D004323 ORTHO05D005140 2.2e-31 140.6 124 56.5
SalBow7G2861 Salvia bowleyana HOM05D004323 ORTHO05D005140 2.2e-31 140.6 150 51.3
HPP92_006392 Vanilla planifolia HOM05D004323 ORTHO05D005140 2.2e-31 140.6 117 58.1
EL10Ac5g11852 Beta vulgaris HOM05D004323 ORTHO05D005140 2.9e-31 140.2 141 55.3
DCAR_010732 Daucus carota HOM05D004323 ORTHO05D005140 2.9e-31 140.2 126 58.7
Manes.02G073900 Manihot esculenta HOM05D004323 ORTHO05D005140 2.9e-31 140.2 160 50.6
Hma1.2p1_0500F.1_g166900 Hydrangea macrophylla HOM05D004323 ORTHO05D005140 3.8e-31 139.8 147 53.1
Hma1.2p1_1820F.1_g304196 Hydrangea macrophylla HOM05D004323 ORTHO05D005140 3.8e-31 139.8 147 53.1
Ah.02g115750 Amaranthus hybridus HOM05D004323 ORTHO05D005140 6.5e-31 139.0 127 56.7
Eucgr.F02814 Eucalyptus grandis HOM05D004323 ORTHO05D005140 6.5e-31 139.0 131 56.5
Aa31LG4G9980 Aethionema arabicum HOM05D004323 ORTHO05D005140 8.5e-31 138.7 117 58.1
Migut.L00479 Erythranthe guttata HOM05D004323 ORTHO05D005140 8.5e-31 138.7 145 52.4
Dinv14868 Davidia involucrata HOM05D004323 ORTHO05D005140 1.1e-30 138.3 145 53.8
Oeu030805.1 Olea europaea HOM05D004323 ORTHO05D005140 1.1e-30 138.3 110 63.6
PSO063G1150 Papaver somniferum HOM05D004323 ORTHO05D005140 1.1e-30 138.3 110 62.7
PGSC0003DMG400030599 Solanum tuberosum HOM05D004323 ORTHO05D005140 1.1e-30 138.3 119 59.7
CiPaw.03G067400 Carya illinoinensis HOM05D004323 ORTHO05D005140 1.4e-30 137.9 137 55.5
PSO782G4339 Papaver somniferum HOM05D004323 ORTHO05D005140 1.4e-30 137.9 110 62.7
Nitab4.5_0002456g0110 Nicotiana tabacum HOM05D004323 ORTHO05D005140 1.9e-30 137.5 118 61.0
Nitab4.5_0003598g0060 Nicotiana tabacum HOM05D004323 ORTHO05D005140 1.9e-30 137.5 118 61.0
COL.COLO4_27122 Corchorus olitorius HOM05D004323 ORTHO05D005140 2.5e-30 137.1 135 57.0
Cpa.g.sc116.11 Carica papaya HOM05D004323 ORTHO05D005140 3.2e-30 136.7 133 54.1
MD13G1027200 Malus domestica HOM05D004323 ORTHO05D005140 3.2e-30 136.7 130 54.6
Lalb_Chr02g0145481 Lupinus albus HOM05D004323 ORTHO05D005140 4.2e-30 136.3 133 52.6
AUR62030721 Chenopodium quinoa HOM05D004323 ORTHO05D005140 7.2e-30 135.6 124 59.7
Haze_14209 Corylus avellana HOM05D004323 ORTHO05D007831 7.2e-30 135.6 148 51.4
Gohir.D11G173500 Gossypium hirsutum HOM05D004323 ORTHO05D005140 7.2e-30 135.6 123 56.9
Gorai.007G185800 Gossypium raimondii HOM05D004323 ORTHO05D005140 7.2e-30 135.6 123 56.9
Os01g0507500 Oryza sativa ssp. japonica HOM05D004323 ORTHO05D005140 7.2e-30 135.6 126 55.6
MD09G1260000 Malus domestica HOM05D004323 ORTHO05D005140 9.4e-30 135.2 132 53.8
CAN.G625.75 Capsicum annuum HOM05D004323 ORTHO05D005140 1.6e-29 134.4 117 59.0
CDE08G1420 Ceratophyllum demersum HOM05D004323 ORTHO05D005140 2.1e-29 134.0 131 52.7
MD16G1030300 Malus domestica HOM05D004323 ORTHO05D005140 2.1e-29 134.0 130 53.8
CARHR214700 Cardamine hirsuta HOM05D004323 ORTHO05D005140 2.7e-29 133.7 158 51.9
Thecc.04G123700 Theobroma cacao HOM05D004323 ORTHO05D005140 2.7e-29 133.7 130 53.1
Zm00001eb217130 Zea mays HOM05D004323 ORTHO05D005140 3.6e-29 133.3 123 57.7
Ciclev10012163m.g Citrus clementina HOM05D004323 ORTHO05D005140 4.6e-29 132.9 135 52.6
Gohir.A07G076100 Gossypium hirsutum HOM05D004323 ORTHO05D005140 6.1e-29 132.5 132 56.1
TWI79G0055 Tripterygium wilfordii HOM05D004323 ORTHO05D005140 6.1e-29 132.5 115 56.5
Zm00001eb053510 Zea mays HOM05D004323 ORTHO05D005140 6.1e-29 132.5 126 54.8
CBR_g81558 Chara braunii HOM05D004323 ORTHO05D005140 7.9e-29 132.1 146 45.2
Gohir.A11G167200 Gossypium hirsutum HOM05D004323 ORTHO05D005140 7.9e-29 132.1 123 55.3
Gohir.D07G080600 Gossypium hirsutum HOM05D004323 ORTHO05D005140 7.9e-29 132.1 125 56.8
Gorai.001G085700 Gossypium raimondii HOM05D004323 ORTHO05D005140 1.4e-28 131.3 125 56.8
Duzib133G0462 Durio zibethinus HOM05D004323 ORTHO05D005140 3.0e-28 130.2 128 54.7
Thhalv10027858m.g Eutrema salsugineum HOM05D004323 ORTHO05D005140 3.0e-28 130.2 113 56.6
ClCG07G004410 Citrullus lanatus HOM05D004323 ORTHO05D005140 3.9e-28 129.8 102 61.8
PSO063G0228 Papaver somniferum HOM05D004323 ORTHO05D005140 6.7e-28 129.0 110 58.2
SHI04771 Sapria himalayana HOM05D004323 ORTHO05D005140 6.7e-28 129.0 125 60.8
PGR119G1370 Punica granatum HOM05D004323 ORTHO05D005140 1.5e-27 127.9 102 60.8
Potri.004G092200 Populus trichocarpa HOM05D004323 ORTHO05D005140 2.5e-27 127.1 120 55.8
Lalb_Chr06g0165621 Lupinus albus HOM05D004323 ORTHO05D005140 4.3e-27 126.3 300 34.3
Sp7g04050 Schrenkiella parvula HOM05D004323 ORTHO05D005140 4.3e-27 126.3 133 48.9
Atru.chr1.1769 Acer truncatum HOM05D004323 ORTHO05D005140 5.7e-27 125.9 141 46.1
THA.LOC104805595 Tarenaya hassleriana HOM05D004323 ORTHO05D005140 5.7e-27 125.9 135 52.6
AT5G38050 Arabidopsis thaliana HOM05D004323 ORTHO05D005140 1.3e-26 124.8 134 50.7
MBI16_g32956_MAGBIO Magnolia biondii HOM05D004323 ORTHO05D005140 1.8e-25 120.9 101 59.4
Aqoxy3G03961 Aquilegia oxysepala HOM05D004323 ORTHO05D005140 5.3e-25 119.4 110 55.5
Peaxi162Scf00803g00424 Petunia axillaris HOM05D004323 ORTHO05D005140 6.9e-25 119.0 91 64.8
CSS0030424 Camellia sinensis var. sinensis HOM05D004323 ORTHO05D005140 1.0e-23 115.2 128 52.3
AUR62036351 Chenopodium quinoa HOM05D004323 ORTHO05D005140 2.2e-23 114.0 100 62.0
Carub.0005s1233 Capsella rubella HOM05D004323 ORTHO05D005140 2.9e-23 113.6 114 53.5
Sabra04G0062000 Salix brachista HOM05D004323 ORTHO05D005140 3.8e-23 113.2 94 61.7
CSS0049640 Camellia sinensis var. sinensis HOM05D004323 ORTHO05D005140 7.2e-22 109.0 110 53.6
Aa31LG9G17280 Aethionema arabicum HOM05D004323 ORTHO05D004022 9.4e-22 108.6 118 49.2
TWI75G0714 Tripterygium wilfordii HOM05D004323 ORTHO05D005140 1.8e-20 104.4 92 58.7
BcaB06g27162 Brassica carinata HOM05D004323 ORTHO05D005140 6.3e-18 95.9 139 41.7
Actinidia17651 Actinidia chinensis HOM05D004323 ORTHO05D005140 2.9e-15 87.0 118 47.5
unitig_32.g11885 Utricularia gibba HOM05D004323 ORTHO05D005140 6.1e-13 79.3 130 43.8
FvH4_7g01202 Fragaria vesca HOM05D004323 ORTHO05D005140 1.4e-12 78.2 70 52.9
BcaB05g24642 Brassica carinata HOM05D004323 ORTHO05D005140 1.7e-10 71.2 122 41.8


User provided reference genes

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