Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c18_1300 Physcomitrium patens HOM05D000780 ORTHO05D009033 3.5e-154 548.5 330 100.0
AagrBONN_evm.TU.Sc2ySwM_228.3981 Anthoceros agrestis HOM05D000780 ORTHO05D009033 3.4e-48 196.4 257 44.0
Rhsim05G0170400 Rhododendron simsii HOM05D000780 ORTHO05D009033 3.7e-47 193.0 257 43.6
PGR004G1412 Punica granatum HOM05D000780 ORTHO05D009033 3.1e-46 189.9 236 47.5
CsaV3_1G045040 Cucumis sativus L. HOM05D000780 ORTHO05D009033 1.6e-45 187.6 262 43.1
ATR0088G058 Amborella trichopoda HOM05D000780 ORTHO05D009033 3.5e-45 186.4 319 37.6
BcaC02g09559 Brassica carinata HOM05D000780 ORTHO05D009033 1.3e-44 184.5 238 44.1
BolC4t25992H Brassica oleracea HOM05D000780 ORTHO05D009033 1.3e-44 184.5 238 44.1
Hma1.2p1_0130F.1_g060510 Hydrangea macrophylla HOM05D000780 ORTHO05D009033 1.3e-44 184.5 302 39.1
C04p44170 Brassica napus HOM05D000780 ORTHO05D009033 1.7e-44 184.1 238 44.1
Ciclev10021307m.g Citrus clementina HOM05D000780 ORTHO05D009033 1.7e-44 184.1 274 40.5
MD12G1251900 Malus domestica HOM05D000780 ORTHO05D009033 2.3e-44 183.7 301 40.2
MSTRG.27431 Avicennia marina HOM05D000780 ORTHO05D009033 2.9e-44 183.3 236 43.6
GSVIVG01026324001 Vitis vinifera HOM05D000780 ORTHO05D009033 3.8e-44 183.0 277 40.8
Prupe.6G353000 Prunus persica HOM05D000780 ORTHO05D009033 5.0e-44 182.6 224 47.8
Eucgr.H04210 Eucalyptus grandis HOM05D000780 ORTHO05D009033 6.6e-44 182.2 235 44.3
FvH4_6g01461 Fragaria vesca HOM05D000780 ORTHO05D009033 8.6e-44 181.8 285 41.4
Aqoxy5G00106 Aquilegia oxysepala HOM05D000780 ORTHO05D009033 1.1e-43 181.4 254 41.3
CSS0005756 Camellia sinensis var. sinensis HOM05D000780 ORTHO05D009033 1.1e-43 181.4 328 38.1
A04p10530 Brassica napus HOM05D000780 ORTHO05D009033 1.5e-43 181.0 239 43.1
BraA04t16719Z Brassica rapa HOM05D000780 ORTHO05D009033 1.5e-43 181.0 238 43.3
Carub.0007s3248 Capsella rubella HOM05D000780 ORTHO05D009033 1.5e-43 181.0 259 40.5
Gohir.A13G161800 Gossypium hirsutum HOM05D000780 ORTHO05D009033 1.5e-43 181.0 236 44.5
Atru.chr2.1117 Acer truncatum HOM05D000780 ORTHO05D009033 1.9e-43 180.6 236 43.6
Nitab4.5_0003148g0030 Nicotiana tabacum HOM05D000780 ORTHO05D009033 2.5e-43 180.3 236 42.8
Thhalv10027857m.g Eutrema salsugineum HOM05D000780 ORTHO05D009033 3.3e-43 179.9 240 42.5
Gohir.D13G172200 Gossypium hirsutum HOM05D000780 ORTHO05D009033 3.3e-43 179.9 236 44.5
Sc24g0002520 Simmondsia chinensis HOM05D000780 ORTHO05D009033 3.3e-43 179.9 261 41.0
TWI34G1716 Tripterygium wilfordii HOM05D000780 ORTHO05D009033 3.3e-43 179.9 236 44.9
Gorai.013G188500 Gossypium raimondii HOM05D000780 ORTHO05D009033 4.2e-43 179.5 236 44.5
Nitab4.5_0000841g0080 Nicotiana tabacum HOM05D000780 ORTHO05D009033 4.2e-43 179.5 234 42.7
QL01p042200 Quercus lobata HOM05D000780 ORTHO05D009033 4.2e-43 179.5 269 42.0
RcHm_v2.0_Chr3g0449091 Rosa chinensis HOM05D000780 ORTHO05D009033 5.5e-43 179.1 258 44.2
Thecc.05G266300 Theobroma cacao HOM05D000780 ORTHO05D009033 5.5e-43 179.1 236 44.1
Migut.F02052 Erythranthe guttata HOM05D000780 ORTHO05D009033 9.5e-43 178.3 236 42.8
Manes.09G146600 Manihot esculenta HOM05D000780 ORTHO05D009033 9.5e-43 178.3 305 37.7
Os02g0815400 Oryza sativa ssp. japonica HOM05D000780 ORTHO05D009033 9.5e-43 178.3 264 41.7
Sp7g05110 Schrenkiella parvula HOM05D000780 ORTHO05D009033 9.5e-43 178.3 240 42.1
Nn1g03021 Nelumbo nucifera HOM05D000780 ORTHO05D009033 2.1e-42 177.2 240 43.3
AT5G37360 Arabidopsis thaliana HOM05D000780 ORTHO05D009033 3.6e-42 176.4 260 38.5
arahy.Tifrunner.gnm1.ann1.ZAXM00 Arachis hypogaea HOM05D000780 ORTHO05D009033 3.6e-42 176.4 295 38.6
Duzib177G0863 Durio zibethinus HOM05D000780 ORTHO05D009033 3.6e-42 176.4 226 45.1
AL7G45990 Arabidopsis lyrata HOM05D000780 ORTHO05D009033 4.7e-42 176.0 260 38.8
Actinidia06831 Actinidia chinensis HOM05D000780 ORTHO05D009033 8.0e-42 175.3 326 37.1
Ah.06g187930 Amaranthus hybridus HOM05D000780 ORTHO05D009033 8.0e-42 175.3 235 41.7
Psat6g142000 Pisum sativum HOM05D000780 ORTHO05D008187 8.0e-42 175.3 329 36.5
Potri.019G023700 Populus trichocarpa HOM05D000780 ORTHO05D009033 1.0e-41 174.9 281 40.2
Solyc04g050470.4 Solanum lycopersicum HOM05D000780 ORTHO05D009033 1.0e-41 174.9 244 41.8
arahy.Tifrunner.gnm1.ann1.09X96J Arachis hypogaea HOM05D000780 ORTHO05D009033 2.3e-41 173.7 295 38.3
Glyma.20G221500 Glycine max HOM05D000780 ORTHO05D009033 4.0e-41 172.9 264 41.3
AUR62006989 Chenopodium quinoa HOM05D000780 ORTHO05D009033 5.2e-41 172.6 250 41.2
EL10Ac4g09771 Beta vulgaris HOM05D000780 ORTHO05D009033 8.9e-41 171.8 234 42.7
CARHR215730 Cardamine hirsuta HOM05D000780 ORTHO05D009033 8.9e-41 171.8 240 40.4
Zm00001eb258750 Zea mays HOM05D000780 ORTHO05D009033 1.2e-40 171.4 264 40.2
Ca_09986_v3 Cicer arietinum L. HOM05D000780 ORTHO05D009033 2.0e-40 170.6 260 40.4
SalBow1G6873 Salvia bowleyana HOM05D000780 ORTHO05D009033 2.6e-40 170.2 257 40.5
VMungo0720G1285 Vigna mungo HOM05D000780 ORTHO05D009033 2.6e-40 170.2 256 41.0
DCAR_030971 Daucus carota HOM05D000780 ORTHO05D009033 3.4e-40 169.9 279 38.4
Lj5g0019051 Lotus japonicus HOM05D000780 ORTHO05D009033 3.4e-40 169.9 302 36.4
Hund07171 Selenicereus undatus HOM05D000780 ORTHO05D009033 4.4e-40 169.5 236 43.2
THA.LOC104821566 Tarenaya hassleriana HOM05D000780 ORTHO05D009033 7.5e-40 168.7 254 39.0
Aa31LG9G18020 Aethionema arabicum HOM05D000780 ORTHO05D009033 1.3e-39 167.9 236 39.4
TAR633G0111 Trochodendron aralioides HOM05D000780 ORTHO05D009033 1.7e-39 167.5 246 41.5
AUR62000636 Chenopodium quinoa HOM05D000780 ORTHO05D008187 2.2e-39 167.2 229 41.9
ECA232G3479 Erigeron canadensis HOM05D000780 ORTHO05D009033 2.2e-39 167.2 257 39.3
Phvul.L002032 Phaseolus vulgaris HOM05D000780 ORTHO05D009033 2.9e-39 166.8 270 38.5
vmacro19978 Vaccinium macrocarpon HOM05D000780 ORTHO05D009033 4.9e-39 166.0 298 35.9
Lsat_1_v5_gn_9_46781 Lactuca sativa HOM05D000780 ORTHO05D009033 8.3e-39 165.2 236 39.8
SMO172G0144 Selaginella moellendorffii HOM05D000780 ORTHO05D009033 8.3e-39 165.2 245 39.6
Medtr1g079763 Medicago truncatula HOM05D000780 ORTHO05D009033 1.4e-38 164.5 267 38.2
unitig_37.g12284 Utricularia gibba HOM05D000780 ORTHO05D009033 2.4e-38 163.7 225 42.7
PSO210G3904 Papaver somniferum HOM05D000780 ORTHO05D009033 3.2e-38 163.3 267 38.2
MBI10_g26046_MAGBIO Magnolia biondii HOM05D000780 ORTHO05D009033 9.2e-38 161.8 233 41.2
Lalb_Chr21g0311301 Lupinus albus HOM05D000780 ORTHO05D009033 1.6e-37 161.0 295 36.6
ClCG03G011490 Citrullus lanatus HOM05D000780 ORTHO05D009033 2.3e-36 157.1 235 42.1
CANSAT54G0520 Cannabis sativa HOM05D000780 ORTHO05D009033 3.9e-36 156.4 328 35.4
Potri.013G050300 Populus trichocarpa HOM05D000780 ORTHO05D009033 1.1e-35 154.8 251 39.4
SGA_v2.0_scaffold329G48830 Striga asiatica HOM05D002740 ORTHO05D003126 2.5e-35 153.7 270 36.7
SalBow1G5981 Salvia bowleyana HOM05D000780 ORTHO05D009033 4.3e-35 152.9 287 36.2
MELO3C010086.2 Cucumis melo HOM05D000780 ORTHO05D009033 7.3e-35 152.1 201 42.3
FAN05G0905 Fragaria x ananassa HOM05D000780 ORTHO05D001132 1.2e-34 151.4 296 36.5
FAN14G3828 Fragaria x ananassa HOM05D000780 ORTHO05D001132 1.2e-34 151.4 298 36.6
Oeu001248.1 Olea europaea HOM05D000780 ORTHO05D008187 1.6e-34 151.0 276 35.9
FAN14G4937 Fragaria x ananassa HOM05D000780 ORTHO05D001132 3.6e-34 149.8 297 36.4
COL.COLO4_15539 Corchorus olitorius HOM05D000780 ORTHO05D008187 6.2e-34 149.1 221 40.7
FAN02G1432 Fragaria x ananassa HOM05D000780 ORTHO05D009033 8.0e-34 148.7 282 36.9
Glyma.10G167600 Glycine max HOM05D000780 ORTHO05D009033 3.1e-33 146.7 255 38.0
Dinv01155 Davidia involucrata HOM05D000780 ORTHO05D009033 5.2e-33 146.0 208 39.9
Sabra13G0046100 Salix brachista HOM05D000780 ORTHO05D008187 2.0e-32 144.1 225 39.6
CBR_g11120 Chara braunii HOM05D000780 ORTHO05D009033 5.8e-32 142.5 253 39.9
Peaxi162Scf00077g00138 Petunia axillaris HOM05D000780 ORTHO05D009033 7.5e-32 142.1 223 38.1
TPR.G10273 Trifolium pratense HOM05D000780 ORTHO05D009033 3.2e-30 136.7 326 34.0
HanXRQChr05g0145151 Helianthus annuus HOM05D000780 ORTHO05D009033 4.1e-30 136.3 266 34.6
Cpa.g.c33516 Carica papaya HOM05D000780 ORTHO05D009033 2.3e-28 130.6 188 42.0
Eucgr.H04100 Eucalyptus grandis HOM05D000780 ORTHO05D009033 6.6e-28 129.0 216 38.0
Sabra19G0033700 Salix brachista HOM05D000780 ORTHO05D009033 2.5e-27 127.1 281 35.2
SEGI_21696 Sequoiadendron giganteum HOM05D000780 ORTHO05D009033 5.2e-25 119.4 147 44.2
CSS0024577 Camellia sinensis var. sinensis HOM05D000780 ORTHO05D009033 1.2e-24 118.2 259 34.7
Haze_04472 Corylus avellana HOM05D000780 ORTHO05D009033 1.2e-24 118.2 255 35.7
CiPaw.07G074400 Carya illinoinensis HOM05D000780 ORTHO05D009033 3.7e-23 113.2 198 34.8
Sed0013634 Sechium edule HOM05D000780 ORTHO05D009033 6.4e-23 112.5 234 35.5
HPP92_009056 Vanilla planifolia HOM05D001254 ORTHO05D001386 1.2e-21 108.2 112 49.1
MD12G1251000 Malus domestica HOM05D000072 ORTHO05D009033 2.7e-21 107.1 106 50.9
Lj2A46G68 Lonicera japonica HOM05D000780 ORTHO05D009033 1.2e-18 98.2 144 40.3
Cc09_g03040 Coffea canephora HOM05D000780 ORTHO05D009033 2.8e-18 97.1 88 50.0
FAN09G0636 Fragaria x ananassa HOM05D000780 ORTHO05D001132 8.9e-17 92.0 77 63.6
MD12G1250900 Malus domestica HOM05D000780 ORTHO05D009033 8.9e-17 92.0 161 36.6
HPP92_009057 Vanilla planifolia HOM05D000780 ORTHO05D009033 1.5e-16 91.3 84 53.6
Cc09_g03030 Coffea canephora HOM05D000780 ORTHO05D009033 3.4e-16 90.1 87 54.0
SEGI_05244 Sequoiadendron giganteum HOM05D000780 ORTHO05D009033 4.4e-16 89.7 87 50.6
PGSC0003DMG402028709 Solanum tuberosum HOM05D000780 ORTHO05D009033 4.9e-15 86.3 87 50.6
Sopen04g021250 Solanum pennellii HOM05D000780 ORTHO05D009033 8.4e-15 85.5 87 50.6
FAN11G0130 Fragaria x ananassa HOM05D000780 ORTHO05D009033 2.4e-09 67.4 184 29.3
Eucgr.H04102 Eucalyptus grandis HOM05D000780 ORTHO05D009033 3.4e-08 63.5 209 28.2
FvH4_3g18300 Fragaria vesca HOM05D000780 ORTHO05D196851 1.4e-06 58.2 47 57.4


User provided reference genes

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