Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c17_9080 Physcomitrium patens HOM05D002034 ORTHO05D004251 2.0e-219 765.4 366 100.0
Pp3c22_21020 Physcomitrium patens HOM05D002034 ORTHO05D004251 1.1e-92 344.4 420 46.4
CSS0000627 Camellia sinensis var. sinensis HOM05D002034 ORTHO05D004251 1.2e-46 191.4 427 31.6
CSS0027541 Camellia sinensis var. sinensis HOM05D002034 ORTHO05D004251 1.2e-46 191.4 427 31.6
TAR369G0522 Trochodendron aralioides HOM05D002034 ORTHO05D004251 1.2e-46 191.4 429 32.6
AagrBONN_evm.TU.Sc2ySwM_228.2653 Anthoceros agrestis HOM05D002034 ORTHO05D004251 2.0e-46 190.7 426 32.4
CiPaw.13G072000 Carya illinoinensis HOM05D002034 ORTHO05D004251 2.7e-46 190.3 424 30.4
CsaV3_1G036460 Cucumis sativus L. HOM05D002034 ORTHO05D004251 2.7e-46 190.3 424 30.9
Haze_24388 Corylus avellana HOM05D002034 ORTHO05D004251 3.5e-46 189.9 382 31.7
SEGI_06649 Sequoiadendron giganteum HOM05D002034 ORTHO05D004251 1.3e-45 188.0 425 31.5
SMO141G0130 Selaginella moellendorffii HOM05D002034 ORTHO05D004251 3.0e-45 186.8 421 31.1
ClCG03G000460 Citrullus lanatus HOM05D002034 ORTHO05D004251 3.9e-45 186.4 435 30.6
TAR357G0005 Trochodendron aralioides HOM05D002034 ORTHO05D004251 3.9e-45 186.4 419 32.0
Nn2g10970 Nelumbo nucifera HOM05D002034 ORTHO05D004251 1.1e-44 184.9 427 30.4
Rhsim13G0065900 Rhododendron simsii HOM05D002034 ORTHO05D004251 1.1e-44 184.9 428 31.3
Actinidia23213 Actinidia chinensis HOM05D002034 ORTHO05D004251 1.5e-44 184.5 424 31.4
TWI31G1212 Tripterygium wilfordii HOM05D002034 ORTHO05D004251 3.3e-44 183.3 422 31.3
Aqoxy2G00822 Aquilegia oxysepala HOM05D002034 ORTHO05D004251 4.3e-44 183.0 428 30.1
PSO339G3538 Papaver somniferum HOM05D002034 ORTHO05D004251 5.6e-44 182.6 421 31.1
PSO801G0069 Papaver somniferum HOM05D002034 ORTHO05D004251 5.6e-44 182.6 421 30.2
DCAR_018219 Daucus carota HOM05D002034 ORTHO05D004251 7.3e-44 182.2 426 32.4
Dinv28678 Davidia involucrata HOM05D002034 ORTHO05D004251 1.6e-43 181.0 431 31.1
Duzib150G0116 Durio zibethinus HOM05D002034 ORTHO05D004251 1.6e-43 181.0 426 30.0
Potri.009G076000 Populus trichocarpa HOM05D002034 ORTHO05D004251 1.6e-43 181.0 426 31.5
Psat5g155480 Pisum sativum HOM05D002034 ORTHO05D004251 2.8e-43 180.3 428 31.5
QL01p039781 Quercus lobata HOM05D002034 ORTHO05D004251 2.8e-43 180.3 427 29.5
Thecc.09G354800 Theobroma cacao HOM05D002034 ORTHO05D004251 3.6e-43 179.9 420 30.5
Mapoly0006s0080 Marchantia polymorpha HOM05D002034 ORTHO05D004251 6.2e-43 179.1 428 30.8
Sed0002046 Sechium edule HOM05D002034 ORTHO05D004251 8.0e-43 178.7 424 30.0
Cpa.g.sc2.386 Carica papaya HOM05D002034 ORTHO05D004251 1.0e-42 178.3 427 30.0
CDE08G0674 Ceratophyllum demersum HOM05D002034 ORTHO05D004251 1.0e-42 178.3 417 30.5
Lj6g0001278 Lotus japonicus HOM05D002034 ORTHO05D004251 1.4e-42 177.9 419 31.3
TPR.G32915 Trifolium pratense HOM05D002034 ORTHO05D004251 1.4e-42 177.9 430 31.6
Carub.0008s1910 Capsella rubella HOM05D002034 ORTHO05D004251 3.1e-42 176.8 431 29.9
Glyma.18G058700 Glycine max HOM05D002034 ORTHO05D004251 3.1e-42 176.8 418 30.9
Manes.02G215950 Manihot esculenta HOM05D002034 ORTHO05D004251 3.1e-42 176.8 430 30.0
Phvul.006G072400 Phaseolus vulgaris HOM05D002034 ORTHO05D004251 3.1e-42 176.8 427 31.1
Hma1.2p1_0841F.1_g226850 Hydrangea macrophylla HOM05D002034 ORTHO05D004251 5.2e-42 176.0 435 29.7
Glyma.11G165900 Glycine max HOM05D002034 ORTHO05D004251 8.9e-42 175.3 419 30.8
AL8G34750 Arabidopsis lyrata HOM05D002034 ORTHO05D004251 1.2e-41 174.9 431 29.5
arahy.Tifrunner.gnm1.ann1.H18R60 Arachis hypogaea HOM05D002034 ORTHO05D004251 1.2e-41 174.9 424 30.4
arahy.Tifrunner.gnm1.ann1.Z7E5WK Arachis hypogaea HOM05D002034 ORTHO05D004251 1.2e-41 174.9 425 30.1
COL.COLO4_11121 Corchorus olitorius HOM05D002034 ORTHO05D004251 1.2e-41 174.9 423 30.5
Lalb_Chr04g0252081 Lupinus albus HOM05D002034 ORTHO05D004251 2.0e-41 174.1 424 30.2
MELO3C020522.2 Cucumis melo HOM05D002034 ORTHO05D004251 3.4e-41 173.3 453 28.9
Thhalv10012586m.g Eutrema salsugineum HOM05D002034 ORTHO05D004251 3.4e-41 173.3 430 29.3
Medtr3g465600 Medicago truncatula HOM05D002034 ORTHO05D004251 3.4e-41 173.3 421 30.9
Aa31LG11G290 Aethionema arabicum HOM05D002034 ORTHO05D004251 4.4e-41 172.9 431 29.0
Duzib168G1938 Durio zibethinus HOM05D002034 ORTHO05D004251 4.4e-41 172.9 436 29.1
HanXRQChr08g0229181 Helianthus annuus HOM05D002034 ORTHO05D004251 4.4e-41 172.9 446 28.5
Os03g0295700 Oryza sativa ssp. japonica HOM05D002034 ORTHO05D004251 4.4e-41 172.9 423 30.3
ATR0174G009 Amborella trichopoda HOM05D002034 ORTHO05D004251 5.8e-41 172.6 424 30.4
Zm00001eb396860 Zea mays HOM05D002034 ORTHO05D004251 5.8e-41 172.6 419 28.9
arahy.Tifrunner.gnm1.ann1.RZ6BDN Arachis hypogaea HOM05D002034 ORTHO05D004251 7.5e-41 172.2 424 29.5
AT5G58510 Arabidopsis thaliana HOM05D002034 ORTHO05D004251 9.8e-41 171.8 431 29.5
Lsat_1_v5_gn_9_18521 Lactuca sativa HOM05D002034 ORTHO05D004251 1.3e-40 171.4 429 28.7
PGR102G2830 Punica granatum HOM05D002034 ORTHO05D004251 1.7e-40 171.0 420 29.8
arahy.Tifrunner.gnm1.ann1.WA30K5 Arachis hypogaea HOM05D002034 ORTHO05D004251 2.2e-40 170.6 425 29.4
THA.LOC104799388 Tarenaya hassleriana HOM05D002034 ORTHO05D004251 2.2e-40 170.6 431 28.8
Cfa011748 Carpinus fangiana HOM05D002034 ORTHO05D004251 2.9e-40 170.2 414 28.5
Cc01_g14670 Coffea canephora HOM05D002034 ORTHO05D004251 2.9e-40 170.2 427 29.3
Prupe.6G051700 Prunus persica HOM05D002034 ORTHO05D004251 2.9e-40 170.2 421 29.5
Gorai.003G148700 Gossypium raimondii HOM05D002034 ORTHO05D004251 6.4e-40 169.1 429 29.4
Peaxi162Scf00808g00111 Petunia axillaris HOM05D002034 ORTHO05D004251 6.4e-40 169.1 424 30.7
Ca_14990_v3 Cicer arietinum L. HOM05D002034 ORTHO05D004251 8.3e-40 168.7 401 30.7
Ca_30101_v3 Cicer arietinum L. HOM05D002034 ORTHO05D004251 8.3e-40 168.7 401 30.7
Nitab4.5_0004155g0040 Nicotiana tabacum HOM05D002034 ORTHO05D004251 8.3e-40 168.7 423 30.0
BolC3t13874H Brassica oleracea HOM05D002034 ORTHO05D004251 1.1e-39 168.3 431 28.5
Gohir.D03G141700 Gossypium hirsutum HOM05D002034 ORTHO05D004251 1.1e-39 168.3 429 29.4
A10p15750 Brassica napus HOM05D002034 ORTHO05D004251 1.4e-39 167.9 431 28.8
Nitab4.5_0006148g0070 Nicotiana tabacum HOM05D002034 ORTHO05D004251 1.4e-39 167.9 423 30.0
Pp3c20_20280 Physcomitrium patens HOM05D002034 ORTHO05D004251 1.4e-39 167.9 415 30.4
Pp3c20_20284 Physcomitrium patens HOM05D002034 ORTHO05D004251 1.4e-39 167.9 415 30.4
Sp6g20200 Schrenkiella parvula HOM05D002034 ORTHO05D004251 1.4e-39 167.9 431 29.0
Sopen06g033580 Solanum pennellii HOM05D002034 ORTHO05D004251 1.4e-39 167.9 428 29.4
GSVIVG01024678001 Vitis vinifera HOM05D002034 ORTHO05D004251 1.9e-39 167.5 427 29.7
MD11G1065500 Malus domestica HOM05D002034 ORTHO05D004251 2.4e-39 167.2 421 29.5
RcHm_v2.0_Chr5g0070931 Rosa chinensis HOM05D002034 ORTHO05D004251 2.4e-39 167.2 422 29.4
BolC9t57903H Brassica oleracea HOM05D002034 ORTHO05D004251 3.2e-39 166.8 431 28.5
BraA10t43651Z Brassica rapa HOM05D002034 ORTHO05D004251 4.1e-39 166.4 431 28.5
Gohir.A13G234000 Gossypium hirsutum HOM05D002034 ORTHO05D004251 4.1e-39 166.4 425 28.5
C09p50470 Brassica napus HOM05D002034 ORTHO05D004251 5.4e-39 166.0 430 28.6
CAN.G1095.17 Capsicum annuum HOM05D002034 ORTHO05D004251 5.4e-39 166.0 429 30.3
ECA247G1661 Erigeron canadensis HOM05D002034 ORTHO05D004251 5.4e-39 166.0 452 28.3
CANSAT54G3012 Cannabis sativa HOM05D002034 ORTHO05D004251 7.0e-39 165.6 427 28.1
Gorai.013G270500 Gossypium raimondii HOM05D002034 ORTHO05D004251 9.2e-39 165.2 425 28.5
MSTRG.8115 Avicennia marina HOM05D002034 ORTHO05D004251 1.2e-38 164.9 427 28.8
Gohir.D13G239600 Gossypium hirsutum HOM05D002034 ORTHO05D004251 1.2e-38 164.9 425 28.5
Ciclev10027766m.g Citrus clementina HOM05D002034 ORTHO05D004251 1.6e-38 164.5 428 29.4
FvH4_3g39400 Fragaria vesca HOM05D002034 ORTHO05D004251 1.6e-38 164.5 422 28.9
FAN11G3897 Fragaria x ananassa HOM05D002034 ORTHO05D004251 1.6e-38 164.5 422 28.9
Peaxi162Scf00390g00823 Petunia axillaris HOM05D002034 ORTHO05D004251 1.6e-38 164.5 435 29.2
Solyc06g082200.4 Solanum lycopersicum HOM05D002034 ORTHO05D004251 2.7e-38 163.7 428 29.0
Eucgr.B02225 Eucalyptus grandis HOM05D002034 ORTHO05D004251 4.6e-38 162.9 425 27.3
FAN25G3060 Fragaria x ananassa HOM05D002034 ORTHO05D004251 7.8e-38 162.2 422 28.9
BcaB08g36187 Brassica carinata HOM05D002034 ORTHO05D004251 1.0e-37 161.8 391 28.6
EL10Ac7g15893 Beta vulgaris HOM05D002034 ORTHO05D004251 3.0e-37 160.2 440 27.5
A03p12200 Brassica napus HOM05D002034 ORTHO05D004251 3.0e-37 160.2 431 28.3
BraA03t10531Z Brassica rapa HOM05D002034 ORTHO05D004251 3.0e-37 160.2 431 28.3
Atru.chr3.4154 Acer truncatum HOM05D002034 ORTHO05D004251 3.9e-37 159.8 449 28.1
VMungo0540G1016 Vigna mungo HOM05D002034 ORTHO05D004251 5.0e-37 159.5 359 32.3
FAN16G1479 Fragaria x ananassa HOM05D002034 ORTHO05D004251 1.1e-36 158.3 422 28.7
Sc12g0000270 Simmondsia chinensis HOM05D002034 ORTHO05D004251 1.9e-36 157.5 427 28.8
AUR62009695 Chenopodium quinoa HOM05D002034 ORTHO05D004251 3.6e-35 153.3 448 27.2
unitig_736.g22533 Utricularia gibba HOM05D002034 ORTHO05D004251 4.7e-35 152.9 447 26.4
HPP92_012023 Vanilla planifolia HOM05D002034 ORTHO05D004251 2.3e-34 150.6 404 28.0
BcaB01g04520 Brassica carinata HOM05D002034 ORTHO05D004251 3.1e-34 150.2 379 29.0
AUR62036251 Chenopodium quinoa HOM05D002034 ORTHO05D004251 4.0e-34 149.8 399 29.6
CARHR272340 Cardamine hirsuta HOM05D002034 ORTHO05D004251 9.8e-33 145.2 355 30.1
MSTRG.9115 Avicennia marina HOM05D002034 ORTHO05D004251 2.8e-27 127.1 351 30.2
Sabra09G0057900 Salix brachista HOM05D002034 ORTHO05D004251 6.2e-27 125.9 476 25.8
Migut.F01663 Erythranthe guttata HOM05D002034 ORTHO05D004251 3.1e-26 123.6 325 28.3
Hund18961 Selenicereus undatus HOM05D002034 ORTHO05D004251 2.0e-25 120.9 431 25.8
CBR_g32390 Chara braunii HOM05D002034 ORTHO05D004251 1.3e-24 118.2 449 27.2
Nitab4.5_0001115g0080 Nicotiana tabacum HOM05D002034 ORTHO05D004251 2.9e-24 117.1 413 26.6
Gohir.A03G026800 Gossypium hirsutum HOM05D002034 ORTHO05D004251 4.1e-23 113.2 248 30.6
vmacro02935 Vaccinium macrocarpon HOM05D002034 ORTHO05D004251 2.1e-22 110.9 247 30.8
CSS0020954 Camellia sinensis var. sinensis HOM05D002034 ORTHO05D004251 1.7e-21 107.8 106 53.8
SGA_v2.0_scaffold62G21324 Striga asiatica HOM05D002034 ORTHO05D004251 3.0e-21 107.1 109 51.4
AUR62036252 Chenopodium quinoa HOM05D002034 ORTHO05D004251 8.6e-21 105.5 360 27.2
Lalb_Chr15g0083131 Lupinus albus HOM05D002034 ORTHO05D004251 2.5e-20 104.0 125 48.8
Oeu023980.1 Olea europaea HOM05D002034 ORTHO05D004251 2.5e-20 104.0 167 39.5
Ah.15g096260 Amaranthus hybridus HOM05D002034 ORTHO05D004251 3.3e-20 103.6 251 29.9
PGSC0003DMG400030372 Solanum tuberosum HOM05D002034 ORTHO05D004251 4.3e-20 103.2 106 49.1
Lalb_Chr15g0083121 Lupinus albus HOM05D002034 ORTHO05D004251 6.9e-18 95.9 170 37.6
HPP92_012001 Vanilla planifolia HOM05D002034 ORTHO05D004251 2.0e-17 94.4 82 48.8
vmacro02934 Vaccinium macrocarpon HOM05D002034 ORTHO05D004251 5.8e-17 92.8 63 65.1
Ah.15g096250 Amaranthus hybridus HOM05D002034 ORTHO05D004251 1.3e-13 81.6 75 48.0
C03p14280 Brassica napus HOM05D002034 ORTHO05D004251 6.6e-13 79.3 119 38.7
Nitab4.5_0001469g0010 Nicotiana tabacum HOM05D002034 ORTHO05D004251 4.3e-12 76.6 84 48.8
SHI19193 Sapria himalayana HOM05D002034 ORTHO05D004251 9.6e-12 75.5 81 48.1
Lj1A128G36 Lonicera japonica HOM05D002034 ORTHO05D004251 4.8e-11 73.2 156 34.0
VMungo0647G1991 Vigna mungo HOM05D002034 ORTHO05D004251 1.8e-10 71.2 99 38.4
arahy.Tifrunner.gnm1.ann1.A2LLI3 Arachis hypogaea HOM05D000315 ORTHO05D004251 7.1e-07 59.3 93 39.8


User provided reference genes

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