Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c17_8360 Physcomitrium patens HOM05D007571 ORTHO05D009439 1.2e-75 286.6 154 100.0
SEGI_38446 Sequoiadendron giganteum HOM05D007571 ORTHO05D009439 1.2e-16 90.5 75 61.3
AagrBONN_evm.TU.Sc2ySwM_228.3762 Anthoceros agrestis HOM05D007571 ORTHO05D009439 1.3e-15 87.0 109 48.6
Sed0007395 Sechium edule HOM05D007571 ORTHO05D009439 2.5e-14 82.8 108 45.4
CBR_g6736 Chara braunii HOM05D007571 ORTHO05D009439 7.3e-14 81.3 68 52.9
MELO3C018528.2 Cucumis melo HOM05D007571 ORTHO05D009439 1.3e-13 80.5 109 46.8
CsaV3_7G007730 Cucumis sativus L. HOM05D007571 ORTHO05D009439 4.8e-13 78.6 114 43.9
ClCG02G007100 Citrullus lanatus HOM05D007571 ORTHO05D009439 1.4e-12 77.0 90 48.9
Migut.F01585 Erythranthe guttata HOM05D007571 ORTHO05D009439 2.4e-12 76.3 62 54.8
MBI16_g39621_MAGBIO Magnolia biondii HOM05D007571 ORTHO05D009439 2.4e-12 76.3 76 51.3
MBI16_g43666_MAGBIO Magnolia biondii HOM05D007571 ORTHO05D009439 2.4e-12 76.3 76 51.3
THA.LOC104825387 Tarenaya hassleriana HOM05D007571 ORTHO05D009439 2.4e-12 76.3 68 54.4
HanXRQChr02g0053531 Helianthus annuus HOM05D007571 ORTHO05D009439 5.3e-12 75.1 92 46.7
PSO675G4064 Papaver somniferum HOM05D007571 ORTHO05D009439 6.9e-12 74.7 87 47.1
Actinidia27996 Actinidia chinensis HOM05D007571 ORTHO05D009439 9.0e-12 74.3 119 39.5
Eucgr.G01203 Eucalyptus grandis HOM05D007571 ORTHO05D009439 1.5e-11 73.6 63 54.0
Rhsim05G0092500 Rhododendron simsii HOM05D007571 ORTHO05D009439 1.5e-11 73.6 64 54.7
Haze_10272 Corylus avellana HOM05D007571 ORTHO05D009439 2.0e-11 73.2 94 46.8
Nn6g34507 Nelumbo nucifera HOM05D007571 ORTHO05D009439 2.0e-11 73.2 128 38.3
Sc05g0005590 Simmondsia chinensis HOM05D007571 ORTHO05D009439 2.0e-11 73.2 64 54.7
Actinidia04391 Actinidia chinensis HOM05D007571 ORTHO05D009439 2.6e-11 72.8 120 38.3
Ah.01g007010 Amaranthus hybridus HOM05D007571 ORTHO05D009439 3.4e-11 72.4 101 43.6
CSS0048413 Camellia sinensis var. sinensis HOM05D007571 ORTHO05D009439 4.5e-11 72.0 63 55.6
CANSAT25G0272 Cannabis sativa HOM05D007571 ORTHO05D009439 4.5e-11 72.0 63 54.0
CANSAT25G2750 Cannabis sativa HOM05D007571 ORTHO05D009439 4.5e-11 72.0 63 54.0
Carub.0001s3916 Capsella rubella HOM05D007571 ORTHO05D009439 5.8e-11 71.6 67 52.2
Duzib052G0547 Durio zibethinus HOM05D007571 ORTHO05D009439 5.8e-11 71.6 64 54.7
PSO541G4064 Papaver somniferum HOM05D007571 ORTHO05D009439 5.8e-11 71.6 87 48.3
AL1G57530 Arabidopsis lyrata HOM05D007571 ORTHO05D009439 7.6e-11 71.2 68 50.0
AT1G49975 Arabidopsis thaliana HOM05D007571 ORTHO05D009439 7.6e-11 71.2 68 50.0
COL.COLO4_32496 Corchorus olitorius HOM05D007571 ORTHO05D009439 7.6e-11 71.2 83 45.8
ECA238G3778 Erigeron canadensis HOM05D007571 ORTHO05D009439 7.6e-11 71.2 92 46.7
CARHR040010 Cardamine hirsuta HOM05D007571 ORTHO05D009439 9.9e-11 70.9 70 47.1
AUR62030860 Chenopodium quinoa HOM05D007571 ORTHO05D009439 9.9e-11 70.9 62 51.6
Prupe.8G147200 Prunus persica HOM05D007571 ORTHO05D009439 9.9e-11 70.9 63 52.4
vmacro19538 Vaccinium macrocarpon HOM05D007571 ORTHO05D009439 9.9e-11 70.9 106 42.5
Atru.chr5.2324 Acer truncatum HOM05D007571 ORTHO05D009439 1.3e-10 70.5 68 48.5
DCAR_028375 Daucus carota HOM05D007571 ORTHO05D009439 1.3e-10 70.5 62 51.6
Gohir.A12G018900 Gossypium hirsutum HOM05D007571 ORTHO05D009439 1.7e-10 70.1 64 51.6
Gohir.D12G019350 Gossypium hirsutum HOM05D007571 ORTHO05D009439 1.7e-10 70.1 64 51.6
Potri.001G292000 Populus trichocarpa HOM05D007571 ORTHO05D009439 1.7e-10 70.1 64 50.0
TWI59G0511 Tripterygium wilfordii HOM05D007571 ORTHO05D009439 1.7e-10 70.1 64 50.0
BcaC08g43171 Brassica carinata HOM05D007571 ORTHO05D009439 2.2e-10 69.7 64 53.1
A06p03470 Brassica napus HOM05D007571 ORTHO05D009439 2.2e-10 69.7 64 53.1
C06p04720 Brassica napus HOM05D007571 ORTHO05D009439 2.2e-10 69.7 64 53.1
BraA06t23555Z Brassica rapa HOM05D007571 ORTHO05D009439 2.2e-10 69.7 64 53.1
Lsat_1_v5_gn_2_105800 Lactuca sativa HOM05D007571 ORTHO05D009439 2.2e-10 69.7 116 38.8
RcHm_v2.0_Chr6g0252541 Rosa chinensis HOM05D007571 ORTHO05D009439 2.2e-10 69.7 63 54.0
GSVIVG01037807001 Vitis vinifera HOM05D007571 ORTHO05D009439 2.2e-10 69.7 100 39.0
CAN.G1433.5 Capsicum annuum HOM05D007571 ORTHO05D009439 2.9e-10 69.3 68 47.1
MD10G1108300 Malus domestica HOM05D007571 ORTHO05D009439 2.9e-10 69.3 63 50.8
BcaB07g33447 Brassica carinata HOM05D007571 ORTHO05D009439 4.9e-10 68.6 64 51.6
Nitab4.5_0017347g0020 Nicotiana tabacum HOM05D007571 ORTHO05D009439 4.9e-10 68.6 63 52.4
CiPaw.05G019300 Carya illinoinensis HOM05D000470 ORTHO05D000348 6.4e-10 68.2 60 51.7
CDE04G1832 Ceratophyllum demersum HOM05D007571 ORTHO05D009439 6.4e-10 68.2 80 46.2
Oeu024805.1 Olea europaea HOM05D007571 ORTHO05D009439 6.4e-10 68.2 62 48.4
Cc02_g09420 Coffea canephora HOM05D007571 ORTHO05D009439 8.4e-10 67.8 63 50.8
Os03g0731100 Oryza sativa ssp. japonica HOM05D007571 ORTHO05D009439 1.1e-09 67.4 96 45.8
PGR042G0328 Punica granatum HOM05D007571 ORTHO05D009439 1.1e-09 67.4 64 48.4
Ciclev10029547m.g Citrus clementina HOM05D007571 ORTHO05D009439 1.4e-09 67.0 95 41.1
Solyc05g150152.1 Solanum lycopersicum HOM05D007571 ORTHO05D009439 1.4e-09 67.0 63 47.6
Sopen05g033610 Solanum pennellii HOM05D007571 ORTHO05D009439 1.4e-09 67.0 63 47.6
Sp1g36830 Schrenkiella parvula HOM05D007571 ORTHO05D009439 1.9e-09 66.6 67 47.8
EL10Ac9g22184 Beta vulgaris HOM05D007571 ORTHO05D009439 2.4e-09 66.2 89 40.4
FvH4_2g03581 Fragaria vesca HOM05D007571 ORTHO05D009439 2.4e-09 66.2 124 39.5
FAN20G2923 Fragaria x ananassa HOM05D007571 ORTHO05D009439 2.4e-09 66.2 124 39.5
Aqoxy6G02559 Aquilegia oxysepala HOM05D007571 ORTHO05D009439 3.2e-09 65.9 116 41.4
arahy.Tifrunner.gnm1.ann1.A1M8SQ Arachis hypogaea HOM05D007571 ORTHO05D009439 3.2e-09 65.9 64 48.4
arahy.Tifrunner.gnm1.ann1.I40GDJ Arachis hypogaea HOM05D007571 ORTHO05D009439 3.2e-09 65.9 64 48.4
Hund06510 Selenicereus undatus HOM05D007571 ORTHO05D009439 3.2e-09 65.9 127 37.0
Peaxi162Scf00519g00423 Petunia axillaris HOM05D007571 ORTHO05D009439 4.2e-09 65.5 62 45.2
Nitab4.5_0000687g0180 Nicotiana tabacum HOM05D007571 ORTHO05D009439 5.5e-09 65.1 63 47.6
SalBow6G2573 Salvia bowleyana HOM05D007571 ORTHO05D009439 5.5e-09 65.1 64 48.4
Dinv15820 Davidia involucrata HOM05D007571 ORTHO05D009439 7.1e-09 64.7 58 51.7
Thhalv10011862m.g Eutrema salsugineum HOM05D007571 ORTHO05D009439 7.1e-09 64.7 116 37.9
TAR628G1270 Trochodendron aralioides HOM05D007571 ORTHO05D009439 9.3e-09 64.3 88 42.0
QL11p029955 Quercus lobata HOM05D007571 ORTHO05D009439 1.2e-08 63.9 108 39.8
PGSC0003DMG400023397 Solanum tuberosum HOM05D007571 ORTHO05D009439 1.2e-08 63.9 58 50.0
SGA_v2.0_scaffold62G21311 Striga asiatica HOM05D007002 ORTHO05D008602 1.2e-08 63.9 56 48.2
ATR0739G046 Amborella trichopoda HOM05D007571 ORTHO05D009439 2.7e-08 62.8 76 44.7
Thecc.02G118900 Theobroma cacao HOM05D007571 ORTHO05D009439 2.7e-08 62.8 114 37.7
Medtr1g106075 Medicago truncatula HOM05D007571 ORTHO05D009439 3.5e-08 62.4 122 36.1
TPR.G21146 Trifolium pratense HOM05D007571 ORTHO05D009439 3.5e-08 62.4 118 36.4
MSTRG.417 Avicennia marina HOM05D007571 ORTHO05D009439 6.0e-08 61.6 108 36.1
Zm00001eb056210 Zea mays HOM05D007571 ORTHO05D009439 1.3e-07 60.5 119 37.8
Phvul.007G046800 Phaseolus vulgaris HOM05D007571 ORTHO05D009439 2.3e-07 59.7 108 36.1
Gohir.D12G019400 Gossypium hirsutum HOM05D005832 ORTHO05D007117 3.0e-07 59.3 54 51.9
Lj5g0013426 Lotus japonicus HOM05D007571 ORTHO05D009439 3.0e-07 59.3 63 44.4
Gorai.008G019700 Gossypium raimondii HOM05D005832 ORTHO05D007117 6.7e-07 58.2 63 44.4
Medtr3g008630 Medicago truncatula HOM05D007571 ORTHO05D009439 6.7e-07 58.2 102 35.3
Sabra16G0182000 Salix brachista HOM05D007571 ORTHO05D009439 1.1e-06 57.4 45 55.6
Glyma.10G256000 Glycine max HOM05D007571 ORTHO05D009439 1.5e-06 57.0 101 35.6
Cre02.g086100 Chlamydomonas reinhardtii HOM05D007571 ORTHO05D009439 2.5e-06 56.2 109 38.5
BolC6t35600H Brassica oleracea HOM05D007571 ORTHO05D009439 3.3e-06 55.8 96 36.5
Lalb_Chr21g0308001 Lupinus albus HOM05D007571 ORTHO05D009439 4.3e-06 55.5 116 32.8


User provided reference genes

Program Settings