Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c17_7480 Physcomitrium patens HOM05D006087 ORTHO05D007479 2.7e-74 282.0 145 100.0
Pp3c14_11460 Physcomitrium patens HOM05D006087 ORTHO05D007479 2.4e-38 162.5 98 82.7
Pp3c22_5660 Physcomitrium patens HOM05D006087 ORTHO05D007479 2.0e-29 132.9 98 63.3
Pp3c21_520 Physcomitrium patens HOM05D006087 ORTHO05D007479 3.8e-28 128.6 95 65.3
Pp3c18_21810 Physcomitrium patens HOM05D006087 ORTHO05D007479 6.4e-28 127.9 98 59.2
Mapoly0062s0032 Marchantia polymorpha HOM05D006087 ORTHO05D007479 1.9e-27 126.3 98 60.2
Ciclev10033174m.g Citrus clementina HOM05D006087 ORTHO05D007479 2.9e-20 102.4 97 52.6
Cc11_g16920 Coffea canephora HOM05D006087 ORTHO05D007479 2.9e-20 102.4 98 50.0
Lalb_Chr12g0206161 Lupinus albus HOM05D006087 ORTHO05D007479 1.4e-19 100.1 99 50.5
Solyc05g015470.1 Solanum lycopersicum HOM05D006087 ORTHO05D007479 1.4e-19 100.1 100 51.0
Sopen05g010780 Solanum pennellii HOM05D006087 ORTHO05D007479 1.4e-19 100.1 100 51.0
Atru.chr11.2326 Acer truncatum HOM05D006087 ORTHO05D007479 3.2e-19 99.0 99 51.5
PGSC0003DMG400014051 Solanum tuberosum HOM05D006087 ORTHO05D007479 3.2e-19 99.0 100 51.0
THA.LOC104812595 Tarenaya hassleriana HOM05D006087 ORTHO05D007479 4.2e-19 98.6 98 49.0
EL10Ac6g13503 Beta vulgaris HOM05D006087 ORTHO05D007479 7.1e-19 97.8 98 50.0
COL.COLO4_20404 Corchorus olitorius HOM05D006087 ORTHO05D007479 7.1e-19 97.8 98 52.0
Gohir.D04G182800 Gossypium hirsutum HOM05D006087 ORTHO05D007479 7.1e-19 97.8 95 49.5
Gorai.012G175800 Gossypium raimondii HOM05D006087 ORTHO05D007479 7.1e-19 97.8 95 49.5
Duzib248G0070 Durio zibethinus HOM05D006087 ORTHO05D007479 1.2e-18 97.1 96 51.0
Aa31LG9G13330 Aethionema arabicum HOM05D006087 ORTHO05D007479 1.6e-18 96.7 99 48.5
Oeu036868.1 Olea europaea HOM05D006087 ORTHO05D007479 2.1e-18 96.3 97 50.5
Ca_16458_v3 Cicer arietinum L. HOM05D006087 ORTHO05D007479 2.7e-18 95.9 98 56.1
Eucgr.B03495 Eucalyptus grandis HOM05D006087 ORTHO05D007479 2.7e-18 95.9 99 47.5
Ah.03g136140 Amaranthus hybridus HOM05D006087 ORTHO05D007479 4.6e-18 95.1 98 46.9
Glyma.18G006400 Glycine max HOM05D006087 ORTHO05D007479 4.6e-18 95.1 99 47.5
Phvul.001G262000 Phaseolus vulgaris HOM05D006087 ORTHO05D007479 4.6e-18 95.1 99 47.5
TPR.G17782 Trifolium pratense HOM05D006087 ORTHO05D007479 4.6e-18 95.1 98 55.1
TWI75G0102 Tripterygium wilfordii HOM05D006087 ORTHO05D007479 4.6e-18 95.1 97 47.4
Carub.0008s0544 Capsella rubella HOM05D006087 ORTHO05D007479 6.0e-18 94.7 99 48.5
CAN.G163.9 Capsicum annuum HOM05D006087 ORTHO05D007479 6.0e-18 94.7 103 49.5
MELO3C011864.2 Cucumis melo HOM05D006087 ORTHO05D007479 6.0e-18 94.7 98 46.9
Lj4g0011842 Lotus japonicus HOM05D006087 ORTHO05D007479 6.0e-18 94.7 98 48.0
Potri.001G056601 Populus trichocarpa HOM05D006087 ORTHO05D007479 6.0e-18 94.7 97 48.5
Medtr3g085300 Medicago truncatula HOM05D006087 ORTHO05D007479 7.9e-18 94.4 98 52.0
Psat5g096360 Pisum sativum HOM05D006087 ORTHO05D007479 7.9e-18 94.4 97 51.5
CsaV3_5G030260 Cucumis sativus L. HOM05D006087 ORTHO05D007479 1.0e-17 94.0 98 46.9
Glyma.11G250700 Glycine max HOM05D006087 ORTHO05D007479 1.0e-17 94.0 99 46.5
TWI18G0911 Tripterygium wilfordii HOM05D006087 ORTHO05D007479 1.0e-17 94.0 97 47.4
A06p47950 Brassica napus HOM05D006087 ORTHO05D007479 1.3e-17 93.6 99 47.5
C07p25860 Brassica napus HOM05D006087 ORTHO05D007479 1.3e-17 93.6 99 47.5
BolC7t43103H Brassica oleracea HOM05D006087 ORTHO05D007479 1.3e-17 93.6 99 47.5
BraA06t27665Z Brassica rapa HOM05D006087 ORTHO05D007479 1.3e-17 93.6 99 47.5
Actinidia20712 Actinidia chinensis HOM05D006087 ORTHO05D007479 1.8e-17 93.2 98 48.0
AT5G43260 Arabidopsis thaliana HOM05D006087 ORTHO05D007479 1.8e-17 93.2 99 47.5
CANSAT01G2640 Cannabis sativa HOM05D006087 ORTHO05D007479 2.3e-17 92.8 98 46.9
FAN07G1634 Fragaria x ananassa HOM05D006087 ORTHO05D007479 2.3e-17 92.8 97 45.4
FAN17G2012 Fragaria x ananassa HOM05D006087 ORTHO05D007479 2.3e-17 92.8 97 45.4
FAN22G0702 Fragaria x ananassa HOM05D006087 ORTHO05D007479 2.3e-17 92.8 97 45.4
BraA09t37633Z Brassica rapa HOM05D006087 ORTHO05D007479 3.0e-17 92.4 97 45.4
Gohir.A04G139600 Gossypium hirsutum HOM05D006087 ORTHO05D007479 3.0e-17 92.4 95 47.4
Manes.12G011100 Manihot esculenta HOM05D006087 ORTHO05D007479 3.0e-17 92.4 99 48.5
Sp2g08050 Schrenkiella parvula HOM05D006087 ORTHO05D007479 3.0e-17 92.4 99 45.5
Thecc.02G208200 Theobroma cacao HOM05D006087 ORTHO05D007479 3.0e-17 92.4 98 49.0
unitig_749.g13305 Utricularia gibba HOM05D006087 ORTHO05D007479 3.0e-17 92.4 99 46.5
PSO017G6027 Papaver somniferum HOM05D006087 ORTHO05D007479 3.9e-17 92.0 99 46.5
PSO478G2574 Papaver somniferum HOM05D006087 ORTHO05D007479 3.9e-17 92.0 99 46.5
RcHm_v2.0_Chr4g0430231 Rosa chinensis HOM05D006087 ORTHO05D007479 3.9e-17 92.0 96 45.8
TAR374G1631 Trochodendron aralioides HOM05D006087 ORTHO05D007479 3.9e-17 92.0 99 46.5
AL8G17230 Arabidopsis lyrata HOM05D006087 ORTHO05D007479 5.1e-17 91.7 99 45.5
Duzib251G0251 Durio zibethinus HOM05D006087 ORTHO05D007479 5.1e-17 91.7 101 48.5
TAR622G0081 Trochodendron aralioides HOM05D006087 ORTHO05D007479 5.1e-17 91.7 98 46.9
A09p20220 Brassica napus HOM05D006087 ORTHO05D007479 6.7e-17 91.3 97 44.3
CiPaw.06G102800 Carya illinoinensis HOM05D006087 ORTHO05D007479 6.7e-17 91.3 99 51.5
FAN12G1341 Fragaria x ananassa HOM05D006087 ORTHO05D007479 6.7e-17 91.3 97 44.3
FAN12G1854 Fragaria x ananassa HOM05D006087 ORTHO05D007479 6.7e-17 91.3 97 44.3
Gohir.D12G152800 Gossypium hirsutum HOM05D006087 ORTHO05D007479 6.7e-17 91.3 95 45.3
Gorai.008G165300 Gossypium raimondii HOM05D006087 ORTHO05D007479 6.7e-17 91.3 95 45.3
Cfa009371 Carpinus fangiana HOM05D006087 ORTHO05D007479 8.7e-17 90.9 99 51.5
CiPaw.05G109600 Carya illinoinensis HOM05D006087 ORTHO05D007479 8.7e-17 90.9 98 44.9
Haze_12421 Corylus avellana HOM05D006087 ORTHO05D007479 8.7e-17 90.9 99 51.5
BcaB07g31021 Brassica carinata HOM05D006087 ORTHO05D007479 1.9e-16 89.7 97 43.3
BcaC04g21941 Brassica carinata HOM05D006087 ORTHO05D007479 1.9e-16 89.7 97 44.3
C09p25630 Brassica napus HOM05D006087 ORTHO05D007479 1.9e-16 89.7 97 44.3
BolC9t55466H Brassica oleracea HOM05D006087 ORTHO05D007479 1.9e-16 89.7 97 44.3
TWI36G1569 Tripterygium wilfordii HOM05D006087 ORTHO05D007479 1.9e-16 89.7 97 46.4
CDE02G3899 Ceratophyllum demersum HOM05D006087 ORTHO05D007479 3.3e-16 89.0 98 44.9
Oeu004448.1 Olea europaea HOM05D006087 ORTHO05D007479 4.3e-16 88.6 96 49.0
Prupe.1G225600 Prunus persica HOM05D006087 ORTHO05D007479 4.3e-16 88.6 97 52.6
Sc04g0010140 Simmondsia chinensis HOM05D006087 ORTHO05D007479 7.4e-16 87.8 98 45.9
CARHR180610 Cardamine hirsuta HOM05D006087 ORTHO05D007479 9.7e-16 87.4 99 44.4
Gohir.A12G148826 Gossypium hirsutum HOM05D006087 ORTHO05D007479 9.7e-16 87.4 95 44.2
MD16G1119600 Malus domestica HOM05D006087 ORTHO05D007479 1.3e-15 87.0 93 44.1
Ah.02g130900 Amaranthus hybridus HOM05D006087 ORTHO05D007479 1.6e-15 86.7 98 42.9
Rhsim12G0025700 Rhododendron simsii HOM05D006087 ORTHO05D007479 1.6e-15 86.7 99 42.4
HanXRQChr10g0310621 Helianthus annuus HOM05D006087 ORTHO05D007479 2.8e-15 85.9 92 45.7
SGA_v2.0_scaffold9G04680 Striga asiatica HOM05D006087 ORTHO05D007479 2.8e-15 85.9 100 46.0
Nitab4.5_0001808g0020 Nicotiana tabacum HOM05D006087 ORTHO05D007479 3.7e-15 85.5 87 49.4
MD13G1119200 Malus domestica HOM05D006087 ORTHO05D007479 4.8e-15 85.1 93 44.1
Duzib268G0474 Durio zibethinus HOM05D006087 ORTHO05D007479 6.3e-15 84.7 91 47.3
Lsat_1_v5_gn_4_3481 Lactuca sativa HOM05D006087 ORTHO05D007479 1.4e-14 83.6 103 44.7
QL03p052667 Quercus lobata HOM05D006087 ORTHO05D007479 1.8e-14 83.2 98 41.8
THA.LOC104825505 Tarenaya hassleriana HOM05D006087 ORTHO05D007479 1.8e-14 83.2 101 51.5
MELO3C010741.2 Cucumis melo HOM05D006087 ORTHO05D007479 3.1e-14 82.4 92 43.5
Hma1.2p1_0065F.1_g035460 Hydrangea macrophylla HOM05D006087 ORTHO05D007479 3.1e-14 82.4 99 42.4
Nitab4.5_0000039g0180 Nicotiana tabacum HOM05D006087 ORTHO05D007479 4.1e-14 82.0 87 47.1
AUR62028927 Chenopodium quinoa HOM05D006087 ORTHO05D007479 5.3e-14 81.6 98 42.9
AUR62005621 Chenopodium quinoa HOM05D006087 ORTHO05D007479 9.0e-14 80.9 98 40.8
THA.LOC104807129 Tarenaya hassleriana HOM05D006087 ORTHO05D007479 9.0e-14 80.9 100 48.0
Aqoxy5G03370 Aquilegia oxysepala HOM05D006087 ORTHO05D007479 2.6e-13 79.3 93 41.9
ECA234G0111 Erigeron canadensis HOM05D006087 ORTHO05D007479 3.4e-13 79.0 86 43.0
Migut.K00735 Erythranthe guttata HOM05D006087 ORTHO05D007479 3.4e-13 79.0 95 41.1
THA.LOC104820522 Tarenaya hassleriana HOM05D006087 ORTHO05D007479 3.4e-13 79.0 98 41.8
ATR0561G204 Amborella trichopoda HOM05D006087 ORTHO05D007479 4.5e-13 78.6 98 40.8
ECA233G2512 Erigeron canadensis HOM05D006443 ORTHO05D007797 1.7e-12 76.6 80 46.2
Potri.003G171800 Populus trichocarpa HOM05D006087 ORTHO05D007479 1.7e-12 76.6 99 41.4
Sed0007875 Sechium edule HOM05D006087 ORTHO05D007479 1.7e-12 76.6 97 40.2
Cpa.g.sc43.59 Carica papaya HOM05D006087 ORTHO05D007479 8.5e-12 74.3 98 39.8
CSS0016505 Camellia sinensis var. sinensis HOM05D006087 ORTHO05D007479 1.1e-11 73.9 85 42.4
CSS0027394 Camellia sinensis var. sinensis HOM05D006087 ORTHO05D007479 1.1e-11 73.9 85 42.4
Migut.E00016 Erythranthe guttata HOM05D006087 ORTHO05D007479 1.4e-11 73.6 98 40.8
MSTRG.8005 Avicennia marina HOM05D006087 ORTHO05D007479 1.9e-11 73.2 100 43.0
Lalb_Chr23g0278081 Lupinus albus HOM05D006087 ORTHO05D007479 5.5e-11 71.6 97 39.2
MBI11_g05327_MAGBIO Magnolia biondii HOM05D006087 ORTHO05D007479 7.2e-11 71.2 66 50.0
ClCG08G017160 Citrullus lanatus HOM05D006087 ORTHO05D007479 9.4e-11 70.9 90 40.0
MD05G1114700 Malus domestica HOM05D006087 ORTHO05D007479 2.7e-10 69.3 69 49.3
PGR102G3303 Punica granatum HOM05D006087 ORTHO05D007479 2.7e-10 69.3 97 40.2
arahy.Tifrunner.gnm1.ann1.1Z01XL Arachis hypogaea HOM05D006087 ORTHO05D007479 1.0e-09 67.4 110 35.5
CsaV3_2G025430 Cucumis sativus L. HOM05D006087 ORTHO05D007479 1.0e-09 67.4 64 45.3
HPP92_024307 Vanilla planifolia HOM05D006087 ORTHO05D007479 6.7e-09 64.7 90 41.1
HPP92_024290 Vanilla planifolia HOM05D006087 ORTHO05D007479 8.8e-09 64.3 58 51.7
MBI11_g44422_MAGBIO Magnolia biondii HOM05D006087 ORTHO05D007479 1.5e-08 63.5 86 38.4
Cre10.g432100 Chlamydomonas reinhardtii HOM05D006087 ORTHO05D007479 4.8e-07 58.5 90 37.8
Zm00001eb421040 Zea mays HOM05D006087 ORTHO05D007479 6.9e-06 54.7 35 62.9


User provided reference genes

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