Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c17_7410 Physcomitrium patens HOM05D004072 ORTHO05D005933 0.0e+00 3721.4 2028 100.0
Pp3c14_11530 Physcomitrium patens HOM05D004072 ORTHO05D005933 0.0e+00 3153.6 2032 83.1
Mapoly0023s0068 Marchantia polymorpha HOM05D004072 ORTHO05D005933 0.0e+00 1907.9 1637 61.0
SEGI_16447 Sequoiadendron giganteum HOM05D004072 ORTHO05D005933 0.0e+00 1822.8 1622 57.7
SMO271G0077 Selaginella moellendorffii HOM05D004072 ORTHO05D005933 0.0e+00 1796.9 1679 54.8
SMO308G0046 Selaginella moellendorffii HOM05D004072 ORTHO05D005933 0.0e+00 1794.2 1679 56.8
Dinv32181 Davidia involucrata HOM05D004072 ORTHO05D005933 0.0e+00 1776.9 1500 59.7
ATR0165G006 Amborella trichopoda HOM05D004072 ORTHO05D005933 0.0e+00 1769.6 1634 57.2
Nn3g20249 Nelumbo nucifera HOM05D004072 ORTHO05D005933 0.0e+00 1768.4 1620 57.7
TAR627G0650 Trochodendron aralioides HOM05D004072 ORTHO05D005933 0.0e+00 1757.3 1633 56.7
TWI73G0101 Tripterygium wilfordii HOM05D004072 ORTHO05D005933 0.0e+00 1753.4 1475 60.1
Manes.06G055700 Manihot esculenta HOM05D004072 ORTHO05D005933 0.0e+00 1751.5 1640 56.7
CANSAT35G1345 Cannabis sativa HOM05D004072 ORTHO05D005933 0.0e+00 1748.0 1499 58.8
Duzib132G0425 Durio zibethinus HOM05D004072 ORTHO05D005933 0.0e+00 1747.6 1506 58.8
RcHm_v2.0_Chr5g0015701 Rosa chinensis HOM05D004072 ORTHO05D005933 0.0e+00 1745.7 1701 54.5
Thecc.02G012200 Theobroma cacao HOM05D004072 ORTHO05D005933 0.0e+00 1743.4 1476 59.6
MD10G1254200 Malus domestica HOM05D004072 ORTHO05D005933 0.0e+00 1741.5 1639 55.9
Aqoxy1G01646_Aqoxy1G01645 Aquilegia oxysepala HOM05D004072 ORTHO05D005933 0.0e+00 1737.2 1663 55.1
Atru.chr10.895 Acer truncatum HOM05D004072 ORTHO05D005933 0.0e+00 1733.4 1723 53.8
PSO675G3632 Papaver somniferum HOM05D004072 ORTHO05D005933 0.0e+00 1731.1 1643 56.2
PGR031G0553 Punica granatum HOM05D004072 ORTHO05D005933 0.0e+00 1731.1 1638 56.1
Manes.14G122228 Manihot esculenta HOM05D004072 ORTHO05D005933 0.0e+00 1726.5 1658 56.3
FvH4_3g09950 Fragaria vesca HOM05D004072 ORTHO05D005933 0.0e+00 1726.1 1640 55.2
FAN16G0609 Fragaria x ananassa HOM05D004072 ORTHO05D005933 0.0e+00 1726.1 1646 55.8
PSO541G2055 Papaver somniferum HOM05D004072 ORTHO05D005933 0.0e+00 1726.1 1744 54.1
SalBow8G4752 Salvia bowleyana HOM05D004072 ORTHO05D005933 0.0e+00 1722.6 1635 55.3
MELO3C007083.2 Cucumis melo HOM05D004072 ORTHO05D005933 0.0e+00 1719.1 1756 53.2
Gohir.D01G131100 Gossypium hirsutum HOM05D004072 ORTHO05D005933 0.0e+00 1719.1 1475 59.2
MD05G1274500 Malus domestica HOM05D004072 ORTHO05D005933 0.0e+00 1718.7 1650 55.2
Potri.001G357700 Populus trichocarpa HOM05D004072 ORTHO05D005933 0.0e+00 1718.7 1616 55.9
GSVIVG01021613001 Vitis vinifera HOM05D004072 ORTHO05D005933 0.0e+00 1718.4 1735 53.2
CSS0029738 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 0.0e+00 1715.3 1627 56.4
Cc09_g08230 Coffea canephora HOM05D004072 ORTHO05D005933 0.0e+00 1714.9 1535 57.5
FAN11G0415 Fragaria x ananassa HOM05D004072 ORTHO05D005933 0.0e+00 1714.1 1640 54.9
CsaV3_6G052280 Cucumis sativus L. HOM05D004072 ORTHO05D005933 0.0e+00 1713.7 1747 53.6
Eucgr.E02482 Eucalyptus grandis HOM05D004072 ORTHO05D005933 0.0e+00 1712.2 1537 57.5
Sed0022754 Sechium edule HOM05D004072 ORTHO05D005933 0.0e+00 1711.8 1499 58.0
CiPaw.10G086200 Carya illinoinensis HOM05D004072 ORTHO05D005933 0.0e+00 1710.7 1620 55.8
FAN25G0515 Fragaria x ananassa HOM05D004072 ORTHO05D005933 0.0e+00 1707.2 1594 56.6
CAN.G660.42 Capsicum annuum HOM05D004072 ORTHO05D005933 0.0e+00 1706.4 1622 55.6
Actinidia07470 Actinidia chinensis HOM05D004072 ORTHO05D005933 0.0e+00 1705.3 1624 55.7
Sopen02g019350 Solanum pennellii HOM05D004072 ORTHO05D005933 0.0e+00 1702.2 1632 54.8
Lsat_1_v5_gn_7_29400 Lactuca sativa HOM05D004072 ORTHO05D005933 0.0e+00 1700.3 1498 56.2
FAN21G2972 Fragaria x ananassa HOM05D004072 ORTHO05D005933 0.0e+00 1699.5 1642 54.6
Gohir.A01G139400 Gossypium hirsutum HOM05D004072 ORTHO05D005933 0.0e+00 1698.7 1652 55.2
Sabra16G0235400 Salix brachista HOM05D004072 ORTHO05D005933 0.0e+00 1698.7 1656 54.6
MSTRG.16285 Avicennia marina HOM05D004072 ORTHO05D005933 0.0e+00 1697.9 1620 55.5
Solyc02g070260.4 Solanum lycopersicum HOM05D004072 ORTHO05D005933 0.0e+00 1695.6 1630 55.3
Gorai.002G162800 Gossypium raimondii HOM05D004072 ORTHO05D005933 0.0e+00 1691.8 1653 54.8
CiPaw.09G116100 Carya illinoinensis HOM05D004072 ORTHO05D005933 0.0e+00 1684.8 1621 55.3
Duzib052G1035 Durio zibethinus HOM05D004072 ORTHO05D005933 0.0e+00 1680.6 1579 55.5
HanXRQChr04g0119071 Helianthus annuus HOM05D004072 ORTHO05D005933 0.0e+00 1672.5 1656 54.2
Thhalv10016130m.g Eutrema salsugineum HOM05D004072 ORTHO05D005933 0.0e+00 1667.1 1648 53.9
Lj6g0006190 Lotus japonicus HOM05D004072 ORTHO05D005933 0.0e+00 1666.0 1645 53.2
Phvul.009G217700 Phaseolus vulgaris HOM05D004072 ORTHO05D005933 0.0e+00 1665.6 1478 56.6
Nitab4.5_0008398g0020 Nicotiana tabacum HOM05D004072 ORTHO05D005933 0.0e+00 1663.3 1761 52.2
ECA236G2867 Erigeron canadensis HOM05D004072 ORTHO05D005933 0.0e+00 1661.7 1630 54.7
AT2G34680 Arabidopsis thaliana HOM05D004072 ORTHO05D005933 0.0e+00 1659.0 1629 54.4
Lalb_Chr08g0233191 Lupinus albus HOM05D004072 ORTHO05D005933 0.0e+00 1654.0 1648 51.9
AL4G30670 Arabidopsis lyrata HOM05D004072 ORTHO05D005933 0.0e+00 1651.3 1631 54.3
Aa31LG10G6650 Aethionema arabicum HOM05D004072 ORTHO05D005933 0.0e+00 1650.6 1645 53.1
Ca_02513_v3 Cicer arietinum L. HOM05D004072 ORTHO05D005933 0.0e+00 1649.8 1631 54.0
Carub.0004s1637 Capsella rubella HOM05D004072 ORTHO05D005933 0.0e+00 1646.7 1624 54.9
SGA_v2.0_scaffold223G42858 Striga asiatica HOM05D004072 ORTHO05D005933 0.0e+00 1646.3 1520 55.8
A03p19230 Brassica napus HOM05D004072 ORTHO05D005933 0.0e+00 1643.6 1629 53.6
THA.LOC104798608 Tarenaya hassleriana HOM05D004072 ORTHO05D005933 0.0e+00 1642.5 1648 54.2
Nitab4.5_0001181g0040 Nicotiana tabacum HOM05D004072 ORTHO05D005933 0.0e+00 1637.1 1764 51.6
Sp4g16960 Schrenkiella parvula HOM05D004072 ORTHO05D005933 0.0e+00 1635.9 1642 53.5
BraA03t11178Z Brassica rapa HOM05D004072 ORTHO05D005933 0.0e+00 1631.7 1639 53.1
Medtr2g048210 Medicago truncatula HOM05D004072 ORTHO05D005933 0.0e+00 1630.9 1606 53.6
C03p22430 Brassica napus HOM05D004072 ORTHO05D005933 0.0e+00 1630.2 1644 53.0
Migut.M01885 Erythranthe guttata HOM05D004072 ORTHO05D005933 0.0e+00 1629.4 1608 54.0
BolC3t14626H Brassica oleracea HOM05D004072 ORTHO05D005933 0.0e+00 1621.3 1632 52.9
Psat1g019120 Pisum sativum HOM05D004072 ORTHO05D005933 0.0e+00 1612.4 1414 57.9
Prupe.4G089200 Prunus persica HOM05D004072 ORTHO05D005933 0.0e+00 1611.7 1535 55.0
EL10Ac8g19581 Beta vulgaris HOM05D004072 ORTHO05D005933 0.0e+00 1608.6 1503 55.5
Ah.14g086190 Amaranthus hybridus HOM05D004072 ORTHO05D005933 0.0e+00 1602.4 1609 53.1
Sc24g0001460 Simmondsia chinensis HOM05D004072 ORTHO05D005933 0.0e+00 1592.4 1422 56.9
AUR62038603 Chenopodium quinoa HOM05D004072 ORTHO05D005933 0.0e+00 1592.0 1654 52.0
ClCG01G025080 Citrullus lanatus HOM05D004072 ORTHO05D005933 0.0e+00 1586.2 1897 48.0
Zm00001eb299970 Zea mays HOM05D004072 ORTHO05D005933 0.0e+00 1576.6 1648 51.3
AUR62042015 Chenopodium quinoa HOM05D004072 ORTHO05D005933 0.0e+00 1569.7 1479 54.6
arahy.Tifrunner.gnm1.ann1.39P5NE Arachis hypogaea HOM05D004072 ORTHO05D005933 0.0e+00 1559.3 1754 50.2
QL05p053312 Quercus lobata HOM05D004072 ORTHO05D005933 0.0e+00 1555.4 1327 58.8
CARHR128800 Cardamine hirsuta HOM05D004072 ORTHO05D005933 0.0e+00 1552.7 1503 52.0
arahy.Tifrunner.gnm1.ann1.WCP5HM Arachis hypogaea HOM05D004072 ORTHO05D005933 0.0e+00 1549.3 1523 52.5
Hund21569 Selenicereus undatus HOM05D004072 ORTHO05D005933 0.0e+00 1526.9 1467 53.1
Peaxi162Scf00670g00114 Petunia axillaris HOM05D004072 ORTHO05D005933 0.0e+00 1523.8 1712 50.5
VMungo1309G2749 Vigna mungo HOM05D004072 ORTHO05D005933 0.0e+00 1500.3 1296 55.7
Glyma.09G084300 Glycine max HOM05D004072 ORTHO05D005933 0.0e+00 1488.0 1290 55.6
BcaC01g05784 Brassica carinata HOM05D004072 ORTHO05D005933 0.0e+00 1450.3 1455 52.6
vmacro03398 Vaccinium macrocarpon HOM05D004072 ORTHO05D005933 0.0e+00 1430.2 2044 43.0
Ciclev10014084m.g Citrus clementina HOM05D004072 ORTHO05D005933 0.0e+00 1413.7 1158 58.9
COL.COLO4_17682 Corchorus olitorius HOM05D004072 ORTHO05D005933 0.0e+00 1399.0 1617 47.9
DCAR_003864 Daucus carota HOM05D004072 ORTHO05D005933 0.0e+00 1392.5 1613 48.7
Oeu040089.1 Olea europaea HOM05D004072 ORTHO05D005933 0.0e+00 1344.7 1826 44.7
HPP92_001000 Vanilla planifolia HOM05D004072 ORTHO05D005933 0.0e+00 1235.3 1085 56.1
Glyma.15G192700 Glycine max HOM05D004072 ORTHO05D005933 0.0e+00 1206.4 1045 56.3
Rhsim13G0119900 Rhododendron simsii HOM05D004072 ORTHO05D005933 0.0e+00 1191.8 1215 51.8
Haze_05771 Corylus avellana HOM05D004072 ORTHO05D005933 0.0e+00 1156.7 1598 44.5
Lj1C1164T5 Lonicera japonica HOM05D004072 ORTHO05D005933 0.0e+00 1117.8 937 58.3
HPP92_000967 Vanilla planifolia HOM05D004072 ORTHO05D005933 0.0e+00 1091.6 1143 50.8
THA.LOC104813323 Tarenaya hassleriana HOM05D004072 ORTHO05D005933 6.8e-285 985.3 960 55.0
Potri.011G090200 Populus trichocarpa HOM05D004072 ORTHO05D005933 1.3e-283 981.1 1060 51.6
TPR.G28615 Trifolium pratense HOM05D004072 ORTHO05D005933 6.6e-272 942.2 1027 51.8
TAR626G0996 Trochodendron aralioides HOM05D004072 ORTHO05D005933 4.1e-253 879.8 911 49.7
TAR626G0585 Trochodendron aralioides HOM05D004072 ORTHO05D005933 1.8e-232 811.2 865 53.4
EL10Ac9g22637 Beta vulgaris HOM05D004072 ORTHO05D005933 6.3e-222 776.2 742 53.8
Hma1.2p1_1600F.1_g293150 Hydrangea macrophylla HOM05D004072 ORTHO05D005933 2.0e-215 754.6 616 61.0
CDE02G3068 Ceratophyllum demersum HOM05D004072 ORTHO05D005933 7.0e-213 746.1 673 54.1
TPR.G28617 Trifolium pratense HOM05D004072 ORTHO05D005933 1.3e-198 698.7 600 56.7
CBR_g51063 Chara braunii HOM05D004072 ORTHO05D005933 2.4e-197 694.5 847 42.1
Potri.011G090150 Populus trichocarpa HOM05D004072 ORTHO05D005933 2.1e-193 681.4 550 61.8
CDE02G4494 Ceratophyllum demersum HOM05D004072 ORTHO05D005933 5.8e-191 673.3 818 49.0
CAN.G660.43 Capsicum annuum HOM05D004072 ORTHO05D005933 1.3e-142 512.7 637 41.8
Cpa.g.sc17.88 Carica papaya HOM05D004072 ORTHO05D005933 3.2e-141 508.1 422 59.2
Os07g0148800 Oryza sativa ssp. japonica HOM05D004072 ORTHO05D005933 7.9e-132 476.9 376 62.2
RcHm_v2.0_Chr1g0313161 Rosa chinensis HOM05D004072 ORTHO05D005933 4.8e-129 467.6 330 68.8
CBR_g58028 Chara braunii HOM05D004072 ORTHO05D005933 5.3e-112 411.0 440 48.2
Glyma.15G192800 Glycine max HOM05D004072 ORTHO05D005933 1.1e-104 386.7 410 57.1
Medtr8g464200 Medicago truncatula HOM05D004072 ORTHO05D005933 1.1e-101 376.7 887 30.7
RcHm_v2.0_Chr5g0015771 Rosa chinensis HOM05D004072 ORTHO05D005933 7.8e-87 327.4 337 53.7
Lj1A1163T36 Lonicera japonica HOM05D004072 ORTHO05D005933 7.3e-85 320.9 404 51.7
HPP92_000970 Vanilla planifolia HOM05D004072 ORTHO05D005933 9.8e-82 310.5 308 59.7
Cpa.g.sc17.85 Carica papaya HOM05D004072 ORTHO05D005933 8.9e-75 287.3 241 58.1
CSS0006934 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 9.5e-69 267.3 216 55.6
Cpa.g.sc17.87 Carica papaya HOM05D004072 ORTHO05D005933 2.3e-67 262.7 245 50.2
Rhsim07G0133800 Rhododendron simsii HOM05D004072 ORTHO05D005933 4.6e-63 248.4 683 30.0
Pp3c11_6080 Physcomitrium patens HOM05D004072 ORTHO05D310412 1.9e-61 243.0 596 39.1
CSS0027246 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 6.9e-51 208.0 190 53.7
CBR_g34929 Chara braunii HOM05D004072 ORTHO05D005933 6.9e-51 208.0 203 50.2
CSS0044654 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 8.7e-46 191.0 193 51.3
Glyma.09G084500 Glycine max HOM05D004072 ORTHO05D005933 8.1e-44 184.5 304 42.1
Lj1A1163T37 Lonicera japonica HOM05D004072 ORTHO05D019491 4.0e-43 182.2 150 57.3
Ca_19908_v3 Cicer arietinum L. HOM05D004072 ORTHO05D005933 2.4e-40 172.9 174 47.7
PGSC0003DMG400021174 Solanum tuberosum HOM05D004072 ORTHO05D005933 2.1e-36 159.8 115 67.8
QL05p053334 Quercus lobata HOM05D004072 ORTHO05D005933 2.8e-36 159.5 97 78.4
CBR_g34931 Chara braunii HOM05D000019 ORTHO05D001702 4.2e-32 145.6 126 55.6
Cpa.g.sc17.83 Carica papaya HOM05D004072 ORTHO05D005933 3.7e-28 132.5 115 49.6
Atru.chr2.7 Acer truncatum HOM05D004072 ORTHO05D005933 1.4e-27 130.6 200 41.5
VMungo1309G0832 Vigna mungo HOM05D004072 ORTHO05D005933 1.5e-26 127.1 192 40.6
MELO3C003358.2 Cucumis melo HOM05D004072 ORTHO05D005933 4.5e-26 125.6 170 41.2
Lsat_1_v5_gn_1_88400 Lactuca sativa HOM05D004072 ORTHO05D005933 4.8e-20 105.5 107 45.8
Cc09_g08270 Coffea canephora HOM05D004072 ORTHO05D005933 8.2e-20 104.8 69 71.0
Hma1.2p1_1600F.1_g293130 Hydrangea macrophylla HOM05D004072 ORTHO05D005933 8.2e-20 104.8 63 81.0
Cc09_g08260 Coffea canephora HOM05D004072 ORTHO05D005933 1.1e-16 94.4 72 66.7
vmacro01040 Vaccinium macrocarpon HOM05D000902 ORTHO05D000832 1.1e-16 94.4 208 34.1
HanXRQChr09g0247891 Helianthus annuus HOM05D004072 ORTHO05D005933 4.2e-16 92.4 108 47.2
Medtr3g010273 Medicago truncatula HOM05D004072 ORTHO05D005933 4.2e-16 92.4 93 49.5
CSS0009414 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 1.6e-15 90.5 64 67.2
RcHm_v2.0_Chr1g0313151 Rosa chinensis HOM05D004072 ORTHO05D005933 2.3e-14 86.7 56 71.4
Actinidia04621 Actinidia chinensis HOM05D004072 ORTHO05D005933 6.7e-14 85.1 106 38.7
Cpa.g.sc17.84 Carica papaya HOM05D004072 ORTHO05D019491 9.7e-13 81.3 68 54.4
SalBow5G3729 Salvia bowleyana HOM05D004072 ORTHO05D007163 8.2e-12 78.2 99 43.4
SEGI_36323 Sequoiadendron giganteum HOM05D004072 ORTHO05D385563 2.2e-09 70.1 73 47.9
PGSC0003DMG400002279 Solanum tuberosum HOM05D004072 ORTHO05D005933 5.0e-09 68.9 47 68.1
SalBow5G4417 Salvia bowleyana HOM05D004072 ORTHO05D007163 6.5e-09 68.6 99 38.4
Oeu032760.3 Olea europaea HOM05D001950 ORTHO05D001926 9.4e-08 64.7 113 34.5
Duzib248G0219 Durio zibethinus HOM05D004072 ORTHO05D019491 1.2e-07 64.3 94 40.4
CAN.G23816.1 Capsicum annuum HOM05D004072 ORTHO05D038051 1.6e-07 63.9 71 39.4
PGSC0003DMG400006210 Solanum tuberosum HOM05D007022 ORTHO05D008868 1.6e-07 63.9 51 58.8
Nn1g03421 Nelumbo nucifera HOM05D004072 ORTHO05D019491 2.1e-07 63.5 46 60.9
Oeu024965.1 Olea europaea HOM05D001950 ORTHO05D001926 2.7e-07 63.2 157 30.6
Lsat_1_v5_gn_6_117121 Lactuca sativa HOM05D004072 ORTHO05D001686 4.7e-07 62.4 61 47.5
CARHR128810 Cardamine hirsuta HOM05D004072 ORTHO05D019491 6.1e-07 62.0 44 63.6
Actinidia36004 Actinidia chinensis HOM05D004072 ORTHO05D038051 7.9e-07 61.6 54 44.4
Ciclev10032200m.g Citrus clementina HOM05D001950 ORTHO05D001926 2.3e-06 60.1 89 39.3
Lsat_1_v5_gn_9_121081 Lactuca sativa HOM05D004072 ORTHO05D001686 3.9e-06 59.3 52 50.0
Thecc.05G230900 Theobroma cacao HOM05D001950 ORTHO05D001926 3.9e-06 59.3 96 37.5
Dinv43987 Davidia involucrata HOM05D001950 ORTHO05D001926 5.1e-06 58.9 117 30.8
COL.COLO4_08535 Corchorus olitorius HOM05D001950 ORTHO05D001926 6.7e-06 58.5 96 36.5


User provided reference genes

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