Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c17_5110 Physcomitrium patens HOM05D003593 ORTHO05D004064 2.8e-138 495.4 267 100.0
ATR0580G077 Amborella trichopoda HOM05D003593 ORTHO05D004064 7.9e-40 168.3 268 41.8
Cc07_g18270 Coffea canephora HOM05D003593 ORTHO05D004064 3.0e-39 166.4 271 41.0
Lj4g0003900 Lotus japonicus HOM05D003593 ORTHO05D004064 8.8e-39 164.9 271 41.0
Glyma.13G102300 Glycine max HOM05D003593 ORTHO05D004064 1.5e-38 164.1 271 41.0
MBI14_g31143_MAGBIO Magnolia biondii HOM05D003593 ORTHO05D004064 7.4e-38 161.8 272 41.2
Phvul.003G138700 Phaseolus vulgaris HOM05D003593 ORTHO05D004064 7.4e-38 161.8 275 41.1
Phvul.003G138826 Phaseolus vulgaris HOM05D003593 ORTHO05D004064 9.7e-38 161.4 275 41.1
Phvul.003G139226 Phaseolus vulgaris HOM05D003593 ORTHO05D004064 9.7e-38 161.4 275 41.1
SGA_v2.0_scaffold10G05150 Striga asiatica HOM05D003593 ORTHO05D004064 1.7e-37 160.6 286 39.9
arahy.Tifrunner.gnm1.ann1.PB4QPE Arachis hypogaea HOM05D003593 ORTHO05D004064 2.2e-37 160.2 274 40.1
arahy.Tifrunner.gnm1.ann1.HDC0J8 Arachis hypogaea HOM05D003593 ORTHO05D004064 2.8e-37 159.8 274 40.1
VMungo1215G1259 Vigna mungo HOM05D003593 ORTHO05D004064 2.8e-37 159.8 272 40.8
Ca_21268_v3 Cicer arietinum L. HOM05D003593 ORTHO05D004064 3.7e-37 159.5 271 39.9
Glyma.17G056700 Glycine max HOM05D003593 ORTHO05D004064 4.8e-37 159.1 271 41.3
THA.LOC104810053 Tarenaya hassleriana HOM05D003593 ORTHO05D004064 4.8e-37 159.1 267 39.3
Glyma.14G032100 Glycine max HOM05D003593 ORTHO05D004064 6.3e-37 158.7 271 39.5
TPR.G5405 Trifolium pratense HOM05D003593 ORTHO05D004064 1.1e-36 157.9 271 39.9
Medtr8g027710 Medicago truncatula HOM05D003593 ORTHO05D004064 4.1e-36 156.0 271 39.5
CAN.G675.9 Capsicum annuum HOM05D003593 ORTHO05D004064 5.3e-36 155.6 267 39.3
Lj1C63T22 Lonicera japonica HOM05D003593 ORTHO05D004064 5.3e-36 155.6 268 40.7
THA.LOC104810051 Tarenaya hassleriana HOM05D003593 ORTHO05D004064 6.9e-36 155.2 267 39.3
Nn8g40907 Nelumbo nucifera HOM05D003593 ORTHO05D004064 9.1e-36 154.8 270 40.0
SMO288G0003 Selaginella moellendorffii HOM05D003593 ORTHO05D004064 9.1e-36 154.8 267 39.7
AUR62035376 Chenopodium quinoa HOM05D003593 ORTHO05D004064 1.5e-35 154.1 269 39.4
Thhalv10010672m.g Eutrema salsugineum HOM05D003593 ORTHO05D004064 2.0e-35 153.7 267 39.0
PGR142G0083 Punica granatum HOM05D003593 ORTHO05D004064 2.0e-35 153.7 267 41.2
Sp1g35080 Schrenkiella parvula HOM05D003593 ORTHO05D004064 2.6e-35 153.3 267 37.8
Rhsim01G0049400 Rhododendron simsii HOM05D003593 ORTHO05D004064 4.5e-35 152.5 273 38.1
GSVIVG01029263001 Vitis vinifera HOM05D003593 ORTHO05D004064 5.9e-35 152.1 271 37.6
TWI39G0804 Tripterygium wilfordii HOM05D003593 ORTHO05D004064 7.7e-35 151.8 267 37.5
QL03p003697 Quercus lobata HOM05D003593 ORTHO05D004064 1.3e-34 151.0 272 40.4
GSVIVG01025934001 Vitis vinifera HOM05D003593 ORTHO05D004064 1.3e-34 151.0 274 36.5
Medtr4g126960 Medicago truncatula HOM05D003593 ORTHO05D004064 1.7e-34 150.6 271 38.7
Migut.D00405 Erythranthe guttata HOM05D003593 ORTHO05D004064 2.2e-34 150.2 272 39.3
SMO352G0089 Selaginella moellendorffii HOM05D003593 ORTHO05D004064 2.2e-34 150.2 272 39.0
TPR.G16420 Trifolium pratense HOM05D003593 ORTHO05D004064 2.2e-34 150.2 272 39.3
MSTRG.21503 Avicennia marina HOM05D003593 ORTHO05D004064 2.9e-34 149.8 271 39.5
Sp5g06880 Schrenkiella parvula HOM05D003593 ORTHO05D004064 5.0e-34 149.1 267 38.2
Actinidia21188 Actinidia chinensis HOM05D003593 ORTHO05D004064 6.5e-34 148.7 267 38.2
CiPaw.08G030900 Carya illinoinensis HOM05D003593 ORTHO05D004064 6.5e-34 148.7 271 38.7
Dinv34117 Davidia involucrata HOM05D003593 ORTHO05D004064 6.5e-34 148.7 275 39.6
C08p30920 Brassica napus HOM05D003593 ORTHO05D004064 8.5e-34 148.3 267 38.6
Eucgr.F03860 Eucalyptus grandis HOM05D003593 ORTHO05D004064 8.5e-34 148.3 272 40.1
Solyc02g069380.3 Solanum lycopersicum HOM05D003593 ORTHO05D004064 8.5e-34 148.3 267 38.6
Aqoxy5G00845 Aquilegia oxysepala HOM05D003593 ORTHO05D004064 1.1e-33 147.9 269 37.5
Cpa.g.sc103.74 Carica papaya HOM05D003593 ORTHO05D004064 1.1e-33 147.9 268 39.2
CiPaw.07G199700 Carya illinoinensis HOM05D003593 ORTHO05D004064 1.1e-33 147.9 271 38.7
Sabra18G0113300 Salix brachista HOM05D003593 ORTHO05D004064 1.1e-33 147.9 271 39.1
GSVIVG01033604001 Vitis vinifera HOM05D003593 ORTHO05D004064 1.1e-33 147.9 271 36.9
Hund02205 Selenicereus undatus HOM05D003593 ORTHO05D004064 1.9e-33 147.1 273 37.0
C08p30910 Brassica napus HOM05D003593 ORTHO05D004064 2.5e-33 146.7 267 38.2
BolC8t50717H Brassica oleracea HOM05D003593 ORTHO05D004064 2.5e-33 146.7 267 38.2
CAN.G1497.5 Capsicum annuum HOM05D003593 ORTHO05D004064 2.5e-33 146.7 276 39.5
AT3G55600 Arabidopsis thaliana HOM05D003593 ORTHO05D004064 3.2e-33 146.4 267 37.5
A09p48590 Brassica napus HOM05D003593 ORTHO05D004064 3.2e-33 146.4 267 37.5
BraA09t40311Z Brassica rapa HOM05D003593 ORTHO05D004064 3.2e-33 146.4 267 37.5
Rhsim01G0266500 Rhododendron simsii HOM05D003593 ORTHO05D004064 3.2e-33 146.4 273 37.0
BcaC07g39887 Brassica carinata HOM05D002600 ORTHO05D003013 4.2e-33 146.0 267 38.2
Carub.0003s3082 Capsella rubella HOM05D003593 ORTHO05D004064 4.2e-33 146.0 267 38.2
MD13G1238800 Malus domestica HOM05D003593 ORTHO05D004064 4.2e-33 146.0 271 39.1
Os09g0272500 Oryza sativa ssp. japonica HOM05D003593 ORTHO05D004064 4.2e-33 146.0 271 38.0
Sc03g0009620 Simmondsia chinensis HOM05D003593 ORTHO05D004064 4.2e-33 146.0 267 39.3
AL5G36800 Arabidopsis lyrata HOM05D003593 ORTHO05D004064 5.5e-33 145.6 267 37.8
Nitab4.5_0010661g0020 Nicotiana tabacum HOM05D003593 ORTHO05D004064 5.5e-33 145.6 271 38.7
Potri.018G133700 Populus trichocarpa HOM05D003593 ORTHO05D004064 5.5e-33 145.6 272 37.1
Prupe.2G148000 Prunus persica HOM05D003593 ORTHO05D004064 5.5e-33 145.6 271 39.5
CSS0033341 Camellia sinensis var. sinensis HOM05D003593 ORTHO05D004064 7.2e-33 145.2 267 39.3
CSS0039493 Camellia sinensis var. sinensis HOM05D003593 ORTHO05D004064 7.2e-33 145.2 267 39.3
Peaxi162Scf00956g00310 Petunia axillaris HOM05D003593 ORTHO05D004064 7.2e-33 145.2 276 38.4
CsaV3_3G012080 Cucumis sativus L. HOM05D003593 ORTHO05D004064 9.4e-33 144.8 271 36.9
Ciclev10032601m.g Citrus clementina HOM05D003593 ORTHO05D004064 1.6e-32 144.1 273 37.4
Duzib068G0242 Durio zibethinus HOM05D003593 ORTHO05D004064 1.6e-32 144.1 271 37.3
SalBow4G0244 Salvia bowleyana HOM05D003593 ORTHO05D004064 1.6e-32 144.1 267 38.2
Zm00001eb252050 Zea mays HOM05D003593 ORTHO05D004064 2.1e-32 143.7 270 37.0
MBI16_g31002_MAGBIO Magnolia biondii HOM05D003593 ORTHO05D004064 2.7e-32 143.3 259 37.5
Os08g0533700 Oryza sativa ssp. japonica HOM05D003593 ORTHO05D004064 3.6e-32 142.9 271 38.4
Ciclev10021956m.g Citrus clementina HOM05D003593 ORTHO05D004064 4.7e-32 142.5 273 37.4
CARHR165650 Cardamine hirsuta HOM05D003593 ORTHO05D004064 6.1e-32 142.1 270 37.4
ECA236G3417 Erigeron canadensis HOM05D003593 ORTHO05D004064 6.1e-32 142.1 274 36.5
Prupe.1G071200 Prunus persica HOM05D003593 ORTHO05D004064 6.1e-32 142.1 267 39.3
Cfa013477 Carpinus fangiana HOM05D003593 ORTHO05D004064 1.4e-31 141.0 267 37.5
Peaxi162Scf00195g00123 Petunia axillaris HOM05D003593 ORTHO05D004064 1.4e-31 141.0 271 38.7
EL10Ac5g11509 Beta vulgaris HOM05D003593 ORTHO05D004064 1.8e-31 140.6 267 37.1
FAN20G0230 Fragaria x ananassa HOM05D003593 ORTHO05D004064 1.8e-31 140.6 271 38.0
Nitab4.5_0000630g0070 Nicotiana tabacum HOM05D003593 ORTHO05D004064 2.3e-31 140.2 271 38.4
CANSAT01G0027 Cannabis sativa HOM05D003593 ORTHO05D004064 3.0e-31 139.8 267 36.7
FvH4_2g10880 Fragaria vesca HOM05D003593 ORTHO05D004064 3.0e-31 139.8 271 36.5
PSO063G1703 Papaver somniferum HOM05D003593 ORTHO05D004064 3.0e-31 139.8 267 36.3
ClCG06G013760 Citrullus lanatus HOM05D003593 ORTHO05D004064 5.1e-31 139.0 279 37.3
RcHm_v2.0_Chr6g0268981 Rosa chinensis HOM05D003593 ORTHO05D004064 5.1e-31 139.0 271 36.5
Zm00001eb036800 Zea mays HOM05D003593 ORTHO05D004064 5.1e-31 139.0 270 37.4
AT1G54110 Arabidopsis thaliana HOM05D003593 ORTHO05D004064 6.7e-31 138.7 267 36.3
QL02p059634 Quercus lobata HOM05D003593 ORTHO05D004064 6.7e-31 138.7 282 37.9
RcHm_v2.0_Chr5g0056791 Rosa chinensis HOM05D003593 ORTHO05D004064 6.7e-31 138.7 271 36.5
FAN15G1423 Fragaria x ananassa HOM05D003593 ORTHO05D004064 8.8e-31 138.3 271 36.5
PSO782G1623 Papaver somniferum HOM05D003593 ORTHO05D004064 1.1e-30 137.9 267 36.0
HanXRQChr04g0113781 Helianthus annuus HOM05D003593 ORTHO05D004064 2.0e-30 137.1 272 36.8
Thhalv10011761m.g Eutrema salsugineum HOM05D003593 ORTHO05D004064 2.6e-30 136.7 252 36.5
unitig_22.g5286 Utricularia gibba HOM05D003593 ORTHO05D004064 3.3e-30 136.3 275 37.5
Lsat_1_v5_gn_8_91320 Lactuca sativa HOM05D003593 ORTHO05D004064 5.7e-30 135.6 269 36.4
Thecc.09G252700 Theobroma cacao HOM05D003593 ORTHO05D004064 5.7e-30 135.6 272 38.6
Atru.chr1.1670 Acer truncatum HOM05D003593 ORTHO05D004064 7.4e-30 135.2 298 34.6
Gohir.A10G111600 Gossypium hirsutum HOM05D003593 ORTHO05D004064 9.7e-30 134.8 272 36.4
Gohir.D10G156600 Gossypium hirsutum HOM05D003593 ORTHO05D004064 1.7e-29 134.0 272 36.4
Gorai.011G174800 Gossypium raimondii HOM05D003593 ORTHO05D004064 1.7e-29 134.0 272 36.4
Peaxi162Scf00074g00739 Petunia axillaris HOM05D003593 ORTHO05D004064 4.8e-29 132.5 267 39.3
FAN24G3005 Fragaria x ananassa HOM05D003593 ORTHO05D004064 6.3e-29 132.1 270 35.2
Lsat_1_v5_gn_9_9120 Lactuca sativa HOM05D003593 ORTHO05D004064 6.3e-29 132.1 286 35.7
Lalb_Chr12g0199721 Lupinus albus HOM05D003593 ORTHO05D004064 6.3e-29 132.1 271 36.2
COL.COLO4_13717 Corchorus olitorius HOM05D003593 ORTHO05D004064 1.1e-28 131.3 271 36.5
CBR_g26495 Chara braunii HOM05D003593 ORTHO05D004064 5.3e-28 129.0 281 36.7
Oeu035605.1 Olea europaea HOM05D003593 ORTHO05D004064 5.3e-28 129.0 255 35.7
Sopen02g013070 Solanum pennellii HOM05D003593 ORTHO05D004064 2.0e-27 127.1 252 34.9
MD08G1104600 Malus domestica HOM05D003593 ORTHO05D004064 2.6e-27 126.7 286 37.8
MSTRG.18306 Avicennia marina HOM05D003593 ORTHO05D004064 1.0e-26 124.8 271 35.4
PSO170G4544 Papaver somniferum HOM05D003593 ORTHO05D004064 1.7e-26 124.0 279 33.7
Manes.15G093801 Manihot esculenta HOM05D003593 ORTHO05D004064 2.2e-26 123.6 274 34.7
AUR62029320 Chenopodium quinoa HOM05D003593 ORTHO05D004064 5.0e-26 122.5 241 37.3
QL03p003406 Quercus lobata HOM05D003593 ORTHO05D004064 5.0e-26 122.5 335 32.8
Sed0017744 Sechium edule HOM05D003593 ORTHO05D004064 6.5e-26 122.1 271 36.9
AUR62015608 Chenopodium quinoa HOM05D003593 ORTHO05D004064 3.2e-25 119.8 233 35.6
SEGI_30783 Sequoiadendron giganteum HOM05D003593 ORTHO05D004064 4.2e-25 119.4 235 39.1
Mapoly0001s0213 Marchantia polymorpha HOM05D003593 ORTHO05D004064 5.5e-25 119.0 272 34.6
Manes.03G101800 Manihot esculenta HOM05D003593 ORTHO05D004064 2.7e-24 116.7 242 35.1
AUR62029138 Chenopodium quinoa HOM05D003593 ORTHO05D004064 6.1e-24 115.5 235 35.7
HanXRQChr10g0281101 Helianthus annuus HOM05D003593 ORTHO05D004064 6.1e-24 115.5 245 34.7
BcaB01g00076 Brassica carinata HOM05D003593 ORTHO05D004064 8.0e-24 115.2 243 34.6
Aa31LG5G19840 Aethionema arabicum HOM05D003593 ORTHO05D004064 1.4e-23 114.4 244 34.8
Sopen02g018530 Solanum pennellii HOM05D003593 ORTHO05D004064 1.4e-23 114.4 239 35.1
FvH4_6g47540 Fragaria vesca HOM05D003593 ORTHO05D004064 3.0e-23 113.2 271 32.1
Manes.16G049600 Manihot esculenta HOM05D003593 ORTHO05D004064 6.7e-23 112.1 272 34.2
SEGI_34697 Sequoiadendron giganteum HOM05D003593 ORTHO05D004064 1.3e-21 107.8 106 55.7
FAN09G1792 Fragaria x ananassa HOM05D003593 ORTHO05D004064 1.4e-20 104.4 271 31.4
FAN09G2125 Fragaria x ananassa HOM05D003593 ORTHO05D004064 1.4e-20 104.4 271 31.4
Sed0025908 Sechium edule HOM05D003593 ORTHO05D004064 1.4e-20 104.4 155 43.9
Nitab4.5_0005797g0010 Nicotiana tabacum HOM05D003593 ORTHO05D004064 2.4e-20 103.6 275 32.0
vmacro03823 Vaccinium macrocarpon HOM05D003593 ORTHO05D004064 3.1e-20 103.2 327 29.7
CSS0014982 Camellia sinensis var. sinensis HOM05D003593 ORTHO05D004064 4.1e-20 102.8 136 47.8
HPP92_006993 Vanilla planifolia HOM05D003593 ORTHO05D004064 4.1e-20 102.8 271 32.1
Hma1.2p1_1219F.1_g267880 Hydrangea macrophylla HOM05D003593 ORTHO05D004064 1.2e-19 101.3 263 34.2
CDE06G1796 Ceratophyllum demersum HOM05D003593 ORTHO05D004064 1.6e-19 100.9 234 33.3
FAN02G4054 Fragaria x ananassa HOM05D003593 ORTHO05D004064 3.5e-19 99.8 259 30.9
FAN05G2468 Fragaria x ananassa HOM05D003593 ORTHO05D004064 4.5e-19 99.4 259 30.5
Hma1.2p1_0571F.1_g180780 Hydrangea macrophylla HOM05D003593 ORTHO05D004064 4.5e-19 99.4 267 31.8
CSS0019003 Camellia sinensis var. sinensis HOM05D003593 ORTHO05D004064 5.9e-19 99.0 203 34.5
AL6G40520 Arabidopsis lyrata HOM05D003593 ORTHO05D004064 1.0e-18 98.2 226 35.4
CDE02G1962 Ceratophyllum demersum HOM05D003593 ORTHO05D004064 1.7e-18 97.4 217 33.6
Ah.04g164950 Amaranthus hybridus HOM05D003593 ORTHO05D004064 2.2e-18 97.1 93 55.9
Psat1g089640 Pisum sativum HOM05D003593 ORTHO05D004064 2.2e-18 97.1 213 34.3
AagrBONN_evm.TU.Sc2ySwM_368.144 Anthoceros agrestis HOM05D003593 ORTHO05D004064 5.0e-18 95.9 220 34.1
MELO3C006423.2 Cucumis melo HOM05D003593 ORTHO05D004064 1.1e-17 94.7 213 31.9
DCAR_007335 Daucus carota HOM05D003593 ORTHO05D002993 1.1e-17 94.7 228 34.2
FAN09G2587 Fragaria x ananassa HOM05D003593 ORTHO05D004064 1.5e-17 94.4 259 29.7
AL1G48760 Arabidopsis lyrata HOM05D003593 ORTHO05D004064 1.9e-17 94.0 226 34.5
Rhsim08G0153900 Rhododendron simsii HOM05D003593 ORTHO05D004064 2.5e-17 93.6 101 54.5
Psat2g189400 Pisum sativum HOM05D003593 ORTHO05D004064 4.2e-17 92.8 216 33.8
AL1G62820 Arabidopsis lyrata HOM05D003593 ORTHO05D004064 2.7e-16 90.1 208 33.7
MBI16_g09339_MAGBIO Magnolia biondii HOM05D003593 ORTHO05D004064 6.1e-16 89.0 94 54.3
Atru.chr10.1467 Acer truncatum HOM05D003593 ORTHO05D004064 8.0e-16 88.6 106 50.0
FAN14G2581 Fragaria x ananassa HOM05D003593 ORTHO05D004064 1.4e-15 87.8 212 31.1
CSS0006561 Camellia sinensis var. sinensis HOM05D003593 ORTHO05D004064 5.2e-15 85.9 296 30.7
MBI16_g41745_MAGBIO Magnolia biondii HOM05D003593 ORTHO05D004064 1.5e-14 84.3 83 56.6
CSS0041369 Camellia sinensis var. sinensis HOM05D003593 ORTHO05D004064 5.7e-14 82.4 213 30.0
Mapoly0058s0071 Marchantia polymorpha HOM05D003593 ORTHO05D004064 8.3e-13 78.6 362 26.8
Oeu048106.1 Olea europaea HOM05D003593 ORTHO05D004064 1.1e-12 78.2 82 54.9
Aqoxy5G03192 Aquilegia oxysepala HOM05D003593 ORTHO05D004064 4.1e-12 76.3 89 55.1
PSO170G1127 Papaver somniferum HOM05D003593 ORTHO05D004064 4.1e-12 76.3 196 31.1
MD16G1244100 Malus domestica HOM05D003593 ORTHO05D004064 9.1e-12 75.1 104 47.1
C04p36780 Brassica napus HOM05D003593 ORTHO05D004064 2.9e-10 70.1 85 45.9
BcaC07g39889 Brassica carinata HOM05D003593 ORTHO05D004064 3.2e-09 66.6 71 49.3
CSS0030751 Camellia sinensis var. sinensis HOM05D003593 ORTHO05D004064 1.2e-08 64.7 186 30.1
Thhalv10002036m.g Eutrema salsugineum HOM05D004561 ORTHO05D005315 1.6e-08 64.3 71 46.5
Solyc02g062120.3 Solanum lycopersicum HOM05D003593 ORTHO05D004064 2.7e-08 63.5 75 52.0
Lj2g0027873 Lotus japonicus HOM05D003593 ORTHO05D004064 3.6e-08 63.2 71 49.3
Os02g0306100 Oryza sativa ssp. japonica HOM05D003593 ORTHO05D004064 1.2e-06 58.2 71 43.7
Os08g0534350 Oryza sativa ssp. japonica HOM05D003593 ORTHO05D004064 1.2e-06 58.2 71 43.7
Os08g0535000 Oryza sativa ssp. japonica HOM05D003593 ORTHO05D004064 1.2e-06 58.2 71 43.7
Haze_22054 Corylus avellana HOM05D003593 ORTHO05D004064 2.0e-06 57.4 60 51.7
MD16G1244000 Malus domestica HOM05D003593 ORTHO05D004064 5.7e-06 55.8 71 42.3
Thecc.10G141700 Theobroma cacao HOM05D003593 ORTHO05D004064 5.7e-06 55.8 177 30.5


User provided reference genes

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