Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c17_5060 Physcomitrium patens HOM05D006914 ORTHO05D008583 1.7e-58 229.2 117 100.0
Pp3c19_17380 Physcomitrium patens HOM05D006914 ORTHO05D008583 1.6e-24 116.3 100 66.0
AagrBONN_evm.TU.Sc2ySwM_362.2477 Anthoceros agrestis HOM05D006914 ORTHO05D008583 6.2e-21 104.4 99 61.6
SMO304G0019 Selaginella moellendorffii HOM05D006914 ORTHO05D008583 7.5e-19 97.4 77 66.2
Mapoly0004s0198 Marchantia polymorpha HOM05D006914 ORTHO05D008583 9.8e-19 97.1 75 70.7
ATR0763G197 Amborella trichopoda HOM05D006914 ORTHO05D008583 8.3e-18 94.0 98 56.1
TWI63G1652 Tripterygium wilfordii HOM05D006914 ORTHO05D008583 1.4e-17 93.2 98 55.1
SGA_v2.0_scaffold222G42803 Striga asiatica HOM05D006914 ORTHO05D008583 3.2e-17 92.0 85 58.8
Ah.13g066550 Amaranthus hybridus HOM05D006914 ORTHO05D008583 5.4e-17 91.3 98 54.1
AT5G57860 Arabidopsis thaliana HOM05D006914 ORTHO05D008583 5.4e-17 91.3 100 53.0
CBR_g51779 Chara braunii HOM05D006914 ORTHO05D008583 7.0e-17 90.9 100 54.0
Cc06_g14590 Coffea canephora HOM05D006914 ORTHO05D008583 7.0e-17 90.9 99 53.5
TWI34G0278 Tripterygium wilfordii HOM05D006914 ORTHO05D008583 7.0e-17 90.9 100 53.0
GSVIVG01008452001 Vitis vinifera HOM05D006914 ORTHO05D008583 9.2e-17 90.5 98 53.1
FAN23G1758 Fragaria x ananassa HOM05D006914 ORTHO05D008583 1.2e-16 90.1 98 53.1
FAN26G2758 Fragaria x ananassa HOM05D006914 ORTHO05D008583 1.2e-16 90.1 98 53.1
Nn8g40004 Nelumbo nucifera HOM05D006914 ORTHO05D008583 1.2e-16 90.1 98 52.0
Nitab4.5_0009003g0040 Nicotiana tabacum HOM05D006914 ORTHO05D008583 1.2e-16 90.1 100 52.0
Oeu055276.1 Olea europaea HOM05D006914 ORTHO05D008583 1.2e-16 90.1 101 52.5
Hund04582 Selenicereus undatus HOM05D000185 ORTHO05D000105 1.2e-16 90.1 98 54.1
MSTRG.10711 Avicennia marina HOM05D006914 ORTHO05D008583 1.6e-16 89.7 99 55.6
EL10Ac3g05865 Beta vulgaris HOM05D006914 ORTHO05D008583 1.6e-16 89.7 100 53.0
Ciclev10009995m.g Citrus clementina HOM05D006914 ORTHO05D008583 1.6e-16 89.7 98 51.0
AL8G33910 Arabidopsis lyrata HOM05D006914 ORTHO05D008583 2.1e-16 89.4 99 52.5
QL02p093962 Quercus lobata HOM05D006914 ORTHO05D008583 2.1e-16 89.4 98 53.1
Sp6g19550 Schrenkiella parvula HOM05D006914 ORTHO05D008583 2.1e-16 89.4 100 52.0
Aa31LG3G13700 Aethionema arabicum HOM05D006914 ORTHO05D008583 2.7e-16 89.0 105 49.5
Dinv41349 Davidia involucrata HOM05D006914 ORTHO05D008583 2.7e-16 89.0 98 52.0
Nitab4.5_0001448g0020 Nicotiana tabacum HOM05D006914 ORTHO05D008583 2.7e-16 89.0 100 52.0
unitig_748.g7196 Utricularia gibba HOM05D006914 ORTHO05D008583 2.7e-16 89.0 104 52.9
Actinidia28379 Actinidia chinensis HOM05D006914 ORTHO05D008583 3.5e-16 88.6 101 51.5
Haze_19153 Corylus avellana HOM05D006914 ORTHO05D008583 3.5e-16 88.6 80 57.5
Thhalv10015128m.g Eutrema salsugineum HOM05D006914 ORTHO05D008583 3.5e-16 88.6 100 51.0
Hma1.2p1_2085F.1_g313670 Hydrangea macrophylla HOM05D006914 ORTHO05D008583 3.5e-16 88.6 98 52.0
Os03g0364000 Oryza sativa ssp. japonica HOM05D006914 ORTHO05D008583 3.5e-16 88.6 97 50.5
RcHm_v2.0_Chr2g0085261 Rosa chinensis HOM05D006914 ORTHO05D008583 3.5e-16 88.6 98 52.0
Thecc.09G152600 Theobroma cacao HOM05D006914 ORTHO05D008583 3.5e-16 88.6 98 53.1
TAR626G0439 Trochodendron aralioides HOM05D006914 ORTHO05D008583 3.5e-16 88.6 78 61.5
CARHR271600 Cardamine hirsuta HOM05D006914 ORTHO05D008583 4.6e-16 88.2 100 50.0
DCAR_019414 Daucus carota HOM05D006346 ORTHO05D007910 4.6e-16 88.2 99 50.5
Carub.0008s1839 Capsella rubella HOM05D006914 ORTHO05D008583 6.0e-16 87.8 100 51.0
Cfa020795 Carpinus fangiana HOM05D006914 ORTHO05D008583 6.0e-16 87.8 98 50.0
CiPaw.15G165400 Carya illinoinensis HOM05D006914 ORTHO05D008583 6.0e-16 87.8 98 53.1
Aqoxy5G02159 Aquilegia oxysepala HOM05D006914 ORTHO05D008583 7.8e-16 87.4 98 53.1
CSS0049762 Camellia sinensis var. sinensis HOM05D006914 ORTHO05D008583 7.8e-16 87.4 98 51.0
Oeu021334.1 Olea europaea HOM05D006914 ORTHO05D008583 7.8e-16 87.4 110 49.1
COL.COLO4_23940 Corchorus olitorius HOM05D006914 ORTHO05D008583 1.0e-15 87.0 97 53.6
Migut.K00305 Erythranthe guttata HOM05D006914 ORTHO05D008583 1.0e-15 87.0 96 54.2
FvH4_1g00640 Fragaria vesca HOM05D006914 ORTHO05D008583 1.0e-15 87.0 98 51.0
Peaxi162Scf00156g01316 Petunia axillaris HOM05D006914 ORTHO05D008583 1.0e-15 87.0 106 48.1
AUR62015440 Chenopodium quinoa HOM05D006914 ORTHO05D008583 1.3e-15 86.7 98 52.0
Actinidia23563 Actinidia chinensis HOM05D006914 ORTHO05D008583 1.7e-15 86.3 95 52.6
Glyma.04G155300 Glycine max HOM05D006914 ORTHO05D008583 1.7e-15 86.3 97 52.6
Cpa.g.sc46.184 Carica papaya HOM05D006914 ORTHO05D008583 2.3e-15 85.9 98 51.0
Gohir.D08G256600 Gossypium hirsutum HOM05D006914 ORTHO05D008583 2.3e-15 85.9 98 50.0
Gorai.004G273700 Gossypium raimondii HOM05D006914 ORTHO05D008583 2.3e-15 85.9 98 50.0
TAR383G0505 Trochodendron aralioides HOM05D006914 ORTHO05D008583 2.3e-15 85.9 98 52.0
PSO111G0010 Papaver somniferum HOM05D006914 ORTHO05D008583 3.0e-15 85.5 104 49.0
Rhsim03G0258700 Rhododendron simsii HOM05D000079 ORTHO05D000211 3.9e-15 85.1 75 62.7
Sopen05g034470 Solanum pennellii HOM05D006914 ORTHO05D008583 3.9e-15 85.1 97 51.5
vmacro06059 Vaccinium macrocarpon HOM05D000079 ORTHO05D000211 3.9e-15 85.1 75 61.3
Potri.006G181400 Populus trichocarpa HOM05D006914 ORTHO05D008583 5.1e-15 84.7 98 51.0
CDE05G0490 Ceratophyllum demersum HOM05D006914 ORTHO05D008583 6.6e-15 84.3 100 51.0
AUR62002229 Chenopodium quinoa HOM05D006914 ORTHO05D008583 6.6e-15 84.3 97 51.5
Lsat_1_v5_gn_7_49520 Lactuca sativa HOM05D006914 ORTHO05D008583 6.6e-15 84.3 98 51.0
Manes.14G142700 Manihot esculenta HOM05D006914 ORTHO05D008583 6.6e-15 84.3 98 49.0
HanXRQChr03g0066101 Helianthus annuus HOM05D006914 ORTHO05D008583 8.6e-15 84.0 98 52.0
A02p08150 Brassica napus HOM05D006914 ORTHO05D008583 1.1e-14 83.6 100 49.0
CANSAT56G0295 Cannabis sativa HOM05D006914 ORTHO05D008583 1.1e-14 83.6 99 48.5
ECA240G0809 Erigeron canadensis HOM05D006914 ORTHO05D008583 1.1e-14 83.6 97 51.5
HPP92_020604 Vanilla planifolia HOM05D006914 ORTHO05D008583 1.1e-14 83.6 75 60.0
Atru.chr7.325 Acer truncatum HOM05D006914 ORTHO05D008583 1.5e-14 83.2 98 46.9
BolC3t13912H Brassica oleracea HOM05D006914 ORTHO05D008583 1.5e-14 83.2 99 49.5
MELO3C004120.2 Cucumis melo HOM05D006914 ORTHO05D008583 1.5e-14 83.2 98 51.0
A03p12500 Brassica napus HOM05D006914 ORTHO05D008583 1.9e-14 82.8 100 48.0
Ca_02367_v3 Cicer arietinum L. HOM05D006914 ORTHO05D008583 1.9e-14 82.8 97 51.5
MD15G1149500 Malus domestica HOM05D006914 ORTHO05D008583 1.9e-14 82.8 98 50.0
PGSC0003DMG400023462 Solanum tuberosum HOM05D006914 ORTHO05D008583 1.9e-14 82.8 75 58.7
C02p13800 Brassica napus HOM05D006914 ORTHO05D008583 3.3e-14 82.0 99 48.5
BolC2t07499H Brassica oleracea HOM05D006914 ORTHO05D008583 3.3e-14 82.0 99 48.5
CAN.G694.81 Capsicum annuum HOM05D006914 ORTHO05D008583 3.3e-14 82.0 77 55.8
CsaV3_2G007660 Cucumis sativus L. HOM05D006914 ORTHO05D008583 3.3e-14 82.0 98 50.0
ClCG02G014340 Citrullus lanatus HOM05D006914 ORTHO05D008583 4.3e-14 81.6 98 50.0
Duzib150G1072 Durio zibethinus HOM05D006914 ORTHO05D008583 4.3e-14 81.6 99 48.5
Duzib187G0910 Durio zibethinus HOM05D006914 ORTHO05D008583 4.3e-14 81.6 97 50.5
C09p49750 Brassica napus HOM05D006914 ORTHO05D008583 5.6e-14 81.3 100 48.0
Nitab4.5_0000233g0040 Nicotiana tabacum HOM05D006914 ORTHO05D008583 5.6e-14 81.3 98 49.0
BraA03t10565Z Brassica rapa HOM05D006914 ORTHO05D008583 7.3e-14 80.9 99 47.5
Eucgr.C02509 Eucalyptus grandis HOM05D006914 ORTHO05D008583 7.3e-14 80.9 75 57.3
Glyma.06G225000 Glycine max HOM05D006914 ORTHO05D008583 7.3e-14 80.9 97 50.5
Lj6g0027463 Lotus japonicus HOM05D006914 ORTHO05D008583 7.3e-14 80.9 99 49.5
Prupe.7G265800 Prunus persica HOM05D006914 ORTHO05D008583 7.3e-14 80.9 95 51.6
TPR.G25932 Trifolium pratense HOM05D006914 ORTHO05D008583 1.2e-13 80.1 97 48.5
Lalb_Chr11g0072501 Lupinus albus HOM05D006914 ORTHO05D008583 1.6e-13 79.7 97 51.5
PGR102G2895 Punica granatum HOM05D006914 ORTHO05D008583 1.6e-13 79.7 98 46.9
BraA02t05889Z Brassica rapa HOM05D006914 ORTHO05D008583 2.1e-13 79.3 74 58.1
MD02G1005200 Malus domestica HOM05D006914 ORTHO05D008583 2.1e-13 79.3 98 49.0
arahy.Tifrunner.gnm1.ann1.S2MTQV Arachis hypogaea HOM05D006914 ORTHO05D008583 2.8e-13 79.0 74 56.8
Psat1g017920 Pisum sativum HOM05D006914 ORTHO05D008583 3.6e-13 78.6 97 52.6
VMungo0720G1978 Vigna mungo HOM05D006914 ORTHO05D008583 3.6e-13 78.6 97 49.5
Sed0012601 Sechium edule HOM05D006914 ORTHO05D008583 4.7e-13 78.2 98 50.0
arahy.Tifrunner.gnm1.ann1.6E7PQ4 Arachis hypogaea HOM05D006914 ORTHO05D008583 6.2e-13 77.8 74 55.4
Phvul.007G242700 Phaseolus vulgaris HOM05D006914 ORTHO05D008583 6.2e-13 77.8 97 48.5
AagrBONN_evm.TU.Sc2ySwM_228.3148 Anthoceros agrestis HOM05D006914 ORTHO05D008583 1.4e-12 76.6 81 50.6
Medtr2g046160 Medicago truncatula HOM05D006914 ORTHO05D008583 3.1e-12 75.5 97 47.4
Sed0026010 Sechium edule HOM05D006914 ORTHO05D008583 4.0e-12 75.1 98 48.0
Sc13g0007320 Simmondsia chinensis HOM05D006914 ORTHO05D008583 2.6e-11 72.4 66 62.1
Zm00001eb329210 Zea mays HOM05D006914 ORTHO05D008583 4.4e-11 71.6 97 45.4
BcaB05g22379 Brassica carinata HOM05D006914 ORTHO05D008583 9.9e-11 70.5 99 45.5
PSO782G4630 Papaver somniferum HOM05D006914 ORTHO05D008583 1.3e-10 70.1 104 41.3
MCO12G243 Micromonas commoda HOM05D006914 ORTHO05D008583 2.2e-10 69.3 109 43.1
Gohir.A08G236100 Gossypium hirsutum HOM05D006914 ORTHO05D008583 6.4e-10 67.8 68 51.5
Haze_19154 Corylus avellana HOM05D002983 ORTHO05D003451 1.9e-09 66.2 62 54.8
PRCOL_00002080 Prasinoderma coloniale HOM05D006914 ORTHO05D008583 4.6e-08 61.6 95 45.3
Cre12.g554750 Chlamydomonas reinhardtii HOM05D006914 ORTHO05D008583 6.0e-08 61.2 72 47.2
Aa31LG1G14450 Aethionema arabicum HOM05D006914 ORTHO05D008583 1.1e-06 57.0 54 51.9
SHI02838 Sapria himalayana HOM05D006914 ORTHO05D008583 9.5e-06 53.9 62 46.8


User provided reference genes

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