Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c17_4700 Physcomitrium patens HOM05D003990 ORTHO05D004925 3.1e-190 668.3 336 100.0
Mapoly0141s0022 Marchantia polymorpha HOM05D003990 ORTHO05D004925 1.7e-84 317.0 304 55.6
AagrBONN_evm.TU.Sc2ySwM_117.985 Anthoceros agrestis HOM05D003990 ORTHO05D004925 4.3e-83 312.4 252 61.5
Eucgr.D01688 Eucalyptus grandis HOM05D003990 ORTHO05D004925 2.9e-79 299.7 270 55.2
CSS0010282 Camellia sinensis var. sinensis HOM05D003990 ORTHO05D004925 3.2e-78 296.2 267 54.7
CSS0021441 Camellia sinensis var. sinensis HOM05D003990 ORTHO05D004925 3.2e-78 296.2 267 54.7
SEGI_30656 Sequoiadendron giganteum HOM05D003990 ORTHO05D004925 6.0e-77 292.0 295 51.2
Ah.12g053140 Amaranthus hybridus HOM05D003990 ORTHO05D004925 1.3e-76 290.8 278 53.6
Rhsim02G0251300 Rhododendron simsii HOM05D003990 ORTHO05D004925 3.0e-76 289.7 259 56.0
Aqoxy7G00029 Aquilegia oxysepala HOM05D003990 ORTHO05D004925 3.9e-76 289.3 257 55.3
CiPaw.11G113600 Carya illinoinensis HOM05D003990 ORTHO05D004925 3.9e-76 289.3 262 54.6
FAN13G1570 Fragaria x ananassa HOM05D003990 ORTHO05D004925 2.5e-75 286.6 268 53.4
Gohir.A02G097800 Gossypium hirsutum HOM05D003990 ORTHO05D004925 4.3e-75 285.8 287 51.6
ATR0620G013 Amborella trichopoda HOM05D003990 ORTHO05D004925 7.3e-75 285.0 286 51.4
Dinv38683 Davidia involucrata HOM05D003990 ORTHO05D001284 7.3e-75 285.0 258 55.8
Gorai.003G075400 Gossypium raimondii HOM05D003990 ORTHO05D004925 7.3e-75 285.0 287 51.9
MBI12_g30966_MAGBIO Magnolia biondii HOM05D003990 ORTHO05D004925 7.3e-75 285.0 249 56.6
QL02p029171 Quercus lobata HOM05D003990 ORTHO05D004925 7.3e-75 285.0 256 53.9
Potri.003G145700 Populus trichocarpa HOM05D003990 ORTHO05D004925 9.5e-75 284.6 252 55.6
Sabra03G0105900 Salix brachista HOM05D003990 ORTHO05D004925 2.1e-74 283.5 252 54.8
DCAR_009092 Daucus carota HOM05D003990 ORTHO05D004925 2.8e-74 283.1 254 54.7
Sc01g0010580 Simmondsia chinensis HOM05D003990 ORTHO05D004925 2.8e-74 283.1 262 55.0
Ciclev10020878m.g Citrus clementina HOM05D003990 ORTHO05D004925 3.6e-74 282.7 269 52.4
Gohir.D03G086700 Gossypium hirsutum HOM05D003990 ORTHO05D004925 3.6e-74 282.7 287 51.2
TAR629G1984 Trochodendron aralioides HOM05D003990 ORTHO05D004925 3.6e-74 282.7 284 50.4
PSO384G4439 Papaver somniferum HOM05D003990 ORTHO05D004925 4.7e-74 282.3 302 48.7
Cc08_g16660 Coffea canephora HOM05D003990 ORTHO05D004925 6.2e-74 282.0 278 52.2
PSO135G0880 Papaver somniferum HOM05D003990 ORTHO05D004925 6.2e-74 282.0 281 50.5
Peaxi162Scf00102g01878 Petunia axillaris HOM05D003990 ORTHO05D000951 6.2e-74 282.0 269 53.5
Nitab4.5_0001962g0040 Nicotiana tabacum HOM05D003990 ORTHO05D004925 8.1e-74 281.6 260 56.5
RcHm_v2.0_Chr7g0186781 Rosa chinensis HOM05D003990 ORTHO05D004925 8.1e-74 281.6 254 54.7
Sc01g0010590 Simmondsia chinensis HOM05D003990 ORTHO05D004925 1.1e-73 281.2 258 54.3
Duzib084G0313 Durio zibethinus HOM05D003990 ORTHO05D004925 1.4e-73 280.8 255 53.3
ECA246G0738 Erigeron canadensis HOM05D003273 ORTHO05D004023 1.4e-73 280.8 261 52.9
MSTRG.13719 Avicennia marina HOM05D003990 ORTHO05D004925 1.8e-73 280.4 257 54.1
Cfa011937 Carpinus fangiana HOM05D003990 ORTHO05D004925 2.4e-73 280.0 269 52.4
Hma1.2p1_0212F.1_g090230 Hydrangea macrophylla HOM05D003990 ORTHO05D004925 3.1e-73 279.6 262 54.2
Cfa011935 Carpinus fangiana HOM05D003990 ORTHO05D004925 8.9e-73 278.1 251 55.4
CiPaw.12G078400 Carya illinoinensis HOM05D003990 ORTHO05D004925 8.9e-73 278.1 256 52.0
Atru.chr9.1910 Acer truncatum HOM05D003990 ORTHO05D004925 1.2e-72 277.7 268 52.2
Oeu022039.1 Olea europaea HOM05D003990 ORTHO05D004925 1.2e-72 277.7 266 52.6
VMungo1215G2928 Vigna mungo HOM05D003990 ORTHO05D004925 1.2e-72 277.7 281 52.7
Haze_14077 Corylus avellana HOM05D003990 ORTHO05D004925 1.5e-72 277.3 251 55.0
MELO3C013779.2 Cucumis melo HOM05D003990 ORTHO05D004925 2.0e-72 276.9 280 50.4
Carub.0006s2953 Capsella rubella HOM05D003990 ORTHO05D004925 2.6e-72 276.6 277 50.9
Lsat_1_v5_gn_3_13681 Lactuca sativa HOM05D003990 ORTHO05D004925 2.6e-72 276.6 282 48.9
Lj2g0026928 Lotus japonicus HOM05D003990 ORTHO05D004925 2.6e-72 276.6 267 52.8
Sed0016376 Sechium edule HOM05D003990 ORTHO05D004925 2.6e-72 276.6 274 50.7
MD06G1117400 Malus domestica HOM05D003990 ORTHO05D004925 3.4e-72 276.2 254 54.7
Prupe.5G128500 Prunus persica HOM05D003990 ORTHO05D004925 4.4e-72 275.8 252 54.4
HanXRQChr06g0166861 Helianthus annuus HOM05D003990 ORTHO05D004925 5.8e-72 275.4 257 52.1
TWI60G1311 Tripterygium wilfordii HOM05D003990 ORTHO05D004925 7.6e-72 275.0 332 47.0
Duzib205G1059 Durio zibethinus HOM05D003990 ORTHO05D004925 9.9e-72 274.6 277 50.9
Lalb_Chr17g0338551 Lupinus albus HOM05D003990 ORTHO05D004925 9.9e-72 274.6 261 53.3
COL.COLO4_10784 Corchorus olitorius HOM05D003990 ORTHO05D004925 1.3e-71 274.2 255 52.5
CsaV3_3G000920 Cucumis sativus L. HOM05D003990 ORTHO05D004925 1.3e-71 274.2 280 50.0
Nitab4.5_0000673g0130 Nicotiana tabacum HOM05D003990 ORTHO05D004925 1.3e-71 274.2 268 53.4
Solyc08g008530.1 Solanum lycopersicum HOM05D003990 ORTHO05D004925 1.3e-71 274.2 252 55.6
Sopen08g004380 Solanum pennellii HOM05D003990 ORTHO05D004925 2.2e-71 273.5 252 55.2
PGSC0003DMG400005851 Solanum tuberosum HOM05D003990 ORTHO05D004925 2.2e-71 273.5 273 52.4
Oeu022040.1 Olea europaea HOM05D003990 ORTHO05D004925 2.9e-71 273.1 261 51.3
COL.COLO4_10785 Corchorus olitorius HOM05D003990 ORTHO05D004925 3.8e-71 272.7 269 52.8
Manes.11G125600 Manihot esculenta HOM05D003990 ORTHO05D004925 3.8e-71 272.7 255 52.9
CAN.G792.28 Capsicum annuum HOM05D003990 ORTHO05D004925 4.9e-71 272.3 260 51.9
HPP92_008886 Vanilla planifolia HOM05D003990 ORTHO05D004925 4.9e-71 272.3 315 47.6
Thecc.03G222400 Theobroma cacao HOM05D003990 ORTHO05D004925 6.4e-71 271.9 250 55.6
AT4G10750 Arabidopsis thaliana HOM05D003990 ORTHO05D004925 1.1e-70 271.2 277 50.5
CDE04G2232 Ceratophyllum demersum HOM05D003990 ORTHO05D004925 1.9e-70 270.4 267 49.1
Thhalv10029450m.g Eutrema salsugineum HOM05D003990 ORTHO05D004925 1.9e-70 270.4 280 49.6
CARHR255860 Cardamine hirsuta HOM05D003990 ORTHO05D004925 2.4e-70 270.0 280 50.0
Zm00001eb103220 Zea mays HOM05D003990 ORTHO05D004925 3.2e-70 269.6 276 50.7
QL02p029158 Quercus lobata HOM05D003990 ORTHO05D004925 4.2e-70 269.2 257 52.1
QL02p029212 Quercus lobata HOM05D003990 ORTHO05D004925 4.2e-70 269.2 259 50.6
THA.LOC104813054 Tarenaya hassleriana HOM05D003990 ORTHO05D004925 4.2e-70 269.2 257 51.0
CANSAT21G0847 Cannabis sativa HOM05D003990 ORTHO05D004925 5.4e-70 268.9 263 51.7
AL6G44800 Arabidopsis lyrata HOM05D003990 ORTHO05D004925 7.1e-70 268.5 277 50.2
Cpa.g.sc175.15 Carica papaya HOM05D003990 ORTHO05D004925 7.1e-70 268.5 274 49.3
Phvul.003G021600 Phaseolus vulgaris HOM05D003990 ORTHO05D004925 9.2e-70 268.1 272 50.7
A09p28480 Brassica napus HOM05D003990 ORTHO05D004925 2.1e-69 266.9 270 48.9
Aa31LG9G11320 Aethionema arabicum HOM05D003990 ORTHO05D004925 2.7e-69 266.5 273 49.5
BcaC04g21069 Brassica carinata HOM05D003990 ORTHO05D004925 3.5e-69 266.2 345 42.3
C09p36050 Brassica napus HOM05D003990 ORTHO05D004925 3.5e-69 266.2 345 42.3
BolC9t56444H Brassica oleracea HOM05D003990 ORTHO05D004925 3.5e-69 266.2 345 42.3
Os09g0529900 Oryza sativa ssp. japonica HOM05D003990 ORTHO05D004925 4.6e-69 265.8 290 47.9
BcaB01g01511 Brassica carinata HOM05D003990 ORTHO05D004925 6.0e-69 265.4 270 48.9
BraA09t38413Z Brassica rapa HOM05D003990 ORTHO05D004925 6.0e-69 265.4 270 49.3
AUR62019906 Chenopodium quinoa HOM05D003990 ORTHO05D004925 1.3e-68 264.2 259 49.8
AUR62007042 Chenopodium quinoa HOM05D003990 ORTHO05D004925 1.7e-68 263.8 262 49.6
Sp6g06750 Schrenkiella parvula HOM05D003990 ORTHO05D004925 3.0e-68 263.1 338 42.6
TPR.G36963 Trifolium pratense HOM05D003990 ORTHO05D004925 3.0e-68 263.1 260 51.2
Ah.12g053130 Amaranthus hybridus HOM05D003990 ORTHO05D004925 3.9e-68 262.7 262 49.6
Medtr1g031790 Medicago truncatula HOM05D003990 ORTHO05D004925 2.5e-67 260.0 254 51.2
EL10Ac5g12452 Beta vulgaris HOM05D003990 ORTHO05D004925 1.1e-65 254.6 263 47.9
Lj8A201T86 Lonicera japonica HOM05D003990 ORTHO05D004925 3.1e-65 253.1 232 52.6
A01p15340 Brassica napus HOM05D003990 ORTHO05D004925 5.3e-65 252.3 280 46.4
BolC1t01855H Brassica oleracea HOM05D003990 ORTHO05D004925 6.9e-65 251.9 280 46.4
Thhalv10026820m.g Eutrema salsugineum HOM05D003990 ORTHO05D004925 2.6e-64 250.0 253 47.8
Nn1g00366 Nelumbo nucifera HOM05D003990 ORTHO05D004925 7.6e-64 248.4 257 49.0
BraA01t01479Z Brassica rapa HOM05D003990 ORTHO05D004925 2.9e-63 246.5 261 45.2
COL.COLO4_10783 Corchorus olitorius HOM05D003990 ORTHO05D004925 8.4e-63 245.0 225 52.0
THA.LOC104815209 Tarenaya hassleriana HOM05D003990 ORTHO05D004925 1.9e-62 243.8 265 44.9
BcaNung01112 Brassica carinata HOM05D003990 ORTHO05D004925 3.2e-62 243.0 261 44.4
C01p19290 Brassica napus HOM05D003990 ORTHO05D004925 3.2e-62 243.0 253 47.4
arahy.Tifrunner.gnm1.ann1.LQZ0GD Arachis hypogaea HOM05D003990 ORTHO05D004925 7.1e-62 241.9 253 44.7
arahy.Tifrunner.gnm1.ann1.ZCAA4H Arachis hypogaea HOM05D003990 ORTHO05D004925 7.1e-62 241.9 253 44.7
EL10Ac5g12450 Beta vulgaris HOM05D003990 ORTHO05D004925 1.0e-60 238.0 214 56.1
Aa31LG6G7280 Aethionema arabicum HOM05D003990 ORTHO05D004925 1.7e-60 237.3 264 44.7
BolC1t01856H Brassica oleracea HOM05D003990 ORTHO05D004925 2.3e-60 236.9 263 43.0
BcaC09g50914 Brassica carinata HOM05D003990 ORTHO05D004925 3.9e-60 236.1 261 43.3
FvH4_5g11021 Fragaria vesca HOM05D003990 ORTHO05D004925 3.9e-60 236.1 258 48.8
A01p15350 Brassica napus HOM05D003990 ORTHO05D004925 1.5e-59 234.2 261 43.7
AUR62019907 Chenopodium quinoa HOM05D003990 ORTHO05D004925 1.9e-59 233.8 215 54.4
C01p19300 Brassica napus HOM05D003990 ORTHO05D004925 5.6e-59 232.3 251 43.8
BraA01t01478Z Brassica rapa HOM05D003990 ORTHO05D004925 6.2e-58 228.8 280 45.0
AL7G29210 Arabidopsis lyrata HOM05D003990 ORTHO05D004925 2.4e-57 226.9 252 43.3
AUR62007043 Chenopodium quinoa HOM05D003990 ORTHO05D004925 5.3e-57 225.7 216 52.3
Ca_12579_v3 Cicer arietinum L. HOM05D003990 ORTHO05D004925 1.2e-56 224.6 210 53.3
Carub.0007s1702 Capsella rubella HOM05D003990 ORTHO05D004925 5.8e-56 222.2 252 44.0
vmacro11510 Vaccinium macrocarpon HOM05D003990 ORTHO05D004925 7.6e-56 221.9 282 45.0
arahy.Tifrunner.gnm1.ann1.IT3SMZ Arachis hypogaea HOM05D003990 ORTHO05D004925 9.9e-56 221.5 269 39.8
arahy.Tifrunner.gnm1.ann1.Y0R09G Arachis hypogaea HOM05D003990 ORTHO05D004925 9.9e-56 221.5 254 41.3
BcaC09g50915 Brassica carinata HOM05D003990 ORTHO05D004925 1.7e-55 220.7 227 47.1
Migut.O00797 Erythranthe guttata HOM05D003990 ORTHO05D004925 2.9e-55 219.9 183 57.4
arahy.Tifrunner.gnm1.ann1.3SR05H Arachis hypogaea HOM05D003990 ORTHO05D004925 4.9e-55 219.2 253 41.1
arahy.Tifrunner.gnm1.ann1.UPJ447 Arachis hypogaea HOM05D003990 ORTHO05D004925 4.9e-55 219.2 253 41.1
CARHR006280 Cardamine hirsuta HOM05D003990 ORTHO05D004925 6.4e-55 218.8 227 47.6
Glyma.07G166800 Glycine max HOM05D003990 ORTHO05D004925 8.4e-55 218.4 172 60.5
arahy.Tifrunner.gnm1.ann1.UE00R2 Arachis hypogaea HOM05D003990 ORTHO05D004925 1.4e-54 217.6 235 46.8
Sc16g0011220 Simmondsia chinensis HOM05D003990 ORTHO05D004925 2.4e-54 216.9 242 47.1
Thecc.03G222500 Theobroma cacao HOM05D003990 ORTHO05D004925 1.6e-53 214.2 170 60.0
Psat6g044760 Pisum sativum HOM05D003990 ORTHO05D004925 2.1e-53 213.8 210 51.9
arahy.Tifrunner.gnm1.ann1.VJUY72 Arachis hypogaea HOM05D003990 ORTHO05D004925 1.4e-49 201.1 251 42.6
arahy.Tifrunner.gnm1.ann1.E0UK9T Arachis hypogaea HOM05D003990 ORTHO05D004925 1.8e-49 200.7 251 42.2
Thhalv10027122m.g Eutrema salsugineum HOM05D003990 ORTHO05D004925 3.1e-49 199.9 253 42.3
Haze_09152 Corylus avellana HOM05D003990 ORTHO05D004925 5.3e-49 199.1 188 51.1
CARHR006270 Cardamine hirsuta HOM05D003990 ORTHO05D004925 9.0e-49 198.4 226 44.2
Sp7g22040 Schrenkiella parvula HOM05D003990 ORTHO05D004925 3.0e-44 183.3 189 49.2
unitig_52.g17196 Utricularia gibba HOM05D003990 ORTHO05D004925 1.1e-41 174.9 160 53.8
Zm00001eb207470 Zea mays HOM05D003990 ORTHO05D004925 1.0e-39 168.3 238 41.6
arahy.Tifrunner.gnm1.ann1.QV8INP Arachis hypogaea HOM05D003990 ORTHO05D004925 1.9e-38 164.1 238 38.2
CARHR231480 Cardamine hirsuta HOM05D003990 ORTHO05D004925 1.2e-37 161.4 181 43.6
Aa31LG6G7290 Aethionema arabicum HOM05D003990 ORTHO05D004925 5.1e-36 156.0 146 48.6
PRCOL_00003301 Prasinoderma coloniale HOM05D003990 ORTHO05D004925 1.6e-34 151.0 231 36.8
QL02p029191 Quercus lobata HOM05D003990 ORTHO05D004925 3.7e-34 149.8 401 29.2
CDE07G1159 Ceratophyllum demersum HOM05D003990 ORTHO05D004925 1.8e-33 147.5 252 36.9
AT4G24080 Arabidopsis thaliana HOM05D003990 ORTHO05D004925 1.9e-30 137.5 162 40.7
AagrBONN_evm.TU.Sc2ySwM_228.2729 Anthoceros agrestis HOM05D003990 ORTHO05D004925 7.2e-30 135.6 204 38.7
Potri.001G084900 Populus trichocarpa HOM05D003990 ORTHO05D004925 1.0e-28 131.7 188 38.3
Zm00001eb366680 Zea mays HOM05D003990 ORTHO05D004925 1.3e-23 114.8 238 34.5
Cfa021766 Carpinus fangiana HOM05D003990 ORTHO05D004925 2.7e-21 107.1 257 28.8
FAN18G2679 Fragaria x ananassa HOM05D003990 ORTHO05D004925 5.1e-20 102.8 110 48.2
Hma1.2p1_0440F.1_g153760 Hydrangea macrophylla HOM05D003990 ORTHO05D004925 1.5e-19 101.3 101 44.6
CAN.G479.14 Capsicum annuum HOM05D003990 ORTHO05D004925 2.8e-18 97.1 111 50.5
Haze_16436 Corylus avellana HOM05D003990 ORTHO05D004925 2.4e-17 94.0 203 34.5
arahy.Tifrunner.gnm1.ann1.R8SYM2 Arachis hypogaea HOM05D003990 ORTHO05D004925 2.0e-16 90.9 114 40.4
FAN18G2309 Fragaria x ananassa HOM05D003990 ORTHO05D004925 7.7e-16 89.0 72 59.7
AagrBONN_evm.TU.Sc2ySwM_344.3329 Anthoceros agrestis HOM05D003990 ORTHO05D071624 1.9e-14 84.3 266 28.9
Cre01.g015550 Chlamydomonas reinhardtii HOM05D003990 ORTHO05D004925 2.5e-14 84.0 187 31.6
Zm00001eb314200 Zea mays HOM05D003990 ORTHO05D004925 3.6e-13 80.1 206 28.2
Thhalv10027505m.g Eutrema salsugineum HOM05D003990 ORTHO05D004925 8.0e-13 79.0 106 37.7
arahy.Tifrunner.gnm1.ann1.S5BUNY Arachis hypogaea HOM05D003990 ORTHO05D004925 4.4e-11 73.2 63 55.6
unitig_52.g17197 Utricularia gibba HOM05D003990 ORTHO05D004925 1.2e-08 65.1 56 58.9
Prupe.2G052300 Prunus persica HOM05D003990 ORTHO05D004925 5.9e-08 62.8 56 50.0
arahy.Tifrunner.gnm1.ann1.228U7D Arachis hypogaea HOM05D003990 ORTHO05D004925 1.7e-07 61.2 70 47.1


User provided reference genes

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