Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c17_260 Physcomitrium patens HOM05D000198 ORTHO05D004339 3.3e-29 131.0 63 100.0
Pp3c20_15680 Physcomitrium patens HOM05D000198 ORTHO05D004339 4.1e-11 70.9 46 58.7
vmacro05130 Vaccinium macrocarpon HOM05D000198 ORTHO05D004339 4.1e-11 70.9 50 56.0
Sabra18G0092600 Salix brachista HOM05D000198 ORTHO05D004339 5.3e-11 70.5 46 60.9
THA.LOC104803898 Tarenaya hassleriana HOM05D000198 ORTHO05D004339 5.3e-11 70.5 46 60.9
A09p56370 Brassica napus HOM05D000198 ORTHO05D004339 6.9e-11 70.1 53 52.8
BolC8t51508H Brassica oleracea HOM05D000198 ORTHO05D004339 6.9e-11 70.1 52 53.8
BraA09t41032Z Brassica rapa HOM05D000198 ORTHO05D004339 6.9e-11 70.1 53 52.8
Nn8g39831 Nelumbo nucifera HOM05D000198 ORTHO05D004339 6.9e-11 70.1 46 60.9
Aqoxy7G03450 Aquilegia oxysepala HOM05D000198 ORTHO05D004339 9.1e-11 69.7 50 56.0
CSS0037981 Camellia sinensis var. sinensis HOM05D000198 ORTHO05D004339 9.1e-11 69.7 46 58.7
CSS0043957 Camellia sinensis var. sinensis HOM05D000198 ORTHO05D004339 9.1e-11 69.7 46 58.7
Cpa.g.sc46.131 Carica papaya HOM05D000198 ORTHO05D004339 9.1e-11 69.7 46 60.9
Glyma.02G202500 Glycine max HOM05D000198 ORTHO05D004339 9.1e-11 69.7 48 58.3
Glyma.17G075300 Glycine max HOM05D000198 ORTHO05D004339 9.1e-11 69.7 48 58.3
Potri.018G109700 Populus trichocarpa HOM05D000198 ORTHO05D004339 9.1e-11 69.7 50 54.0
Rhsim07G0163900 Rhododendron simsii HOM05D000198 ORTHO05D004339 9.1e-11 69.7 50 54.0
Rhsim07G0164000 Rhododendron simsii HOM05D000198 ORTHO05D004339 9.1e-11 69.7 50 54.0
Rhsim07G0164200 Rhododendron simsii HOM05D000198 ORTHO05D004339 9.1e-11 69.7 50 54.0
TAR625G1014 Trochodendron aralioides HOM05D000198 ORTHO05D004339 1.2e-10 69.3 46 60.9
Nn2g12327 Nelumbo nucifera HOM05D000198 ORTHO05D004339 1.5e-10 68.9 46 58.7
TWI34G0274 Tripterygium wilfordii HOM05D000198 ORTHO05D004339 1.5e-10 68.9 46 58.7
VMungo1215G1018 Vigna mungo HOM05D000198 ORTHO05D004339 1.5e-10 68.9 48 54.2
Aqoxy7G03449 Aquilegia oxysepala HOM05D000198 ORTHO05D004339 2.0e-10 68.6 46 58.7
CDE05G0647 Ceratophyllum demersum HOM05D000198 ORTHO05D004339 2.0e-10 68.6 46 58.7
MELO3C004430.2 Cucumis melo HOM05D000198 ORTHO05D004339 2.0e-10 68.6 58 50.0
THA.LOC104803567 Tarenaya hassleriana HOM05D000198 ORTHO05D004339 2.0e-10 68.6 46 58.7
Actinidia14125 Actinidia chinensis HOM05D000198 ORTHO05D004339 2.6e-10 68.2 46 58.7
ClCG02G017120 Citrullus lanatus HOM05D000198 ORTHO05D004339 2.6e-10 68.2 53 49.1
SEGI_16293 Sequoiadendron giganteum HOM05D000198 ORTHO05D004339 2.6e-10 68.2 50 58.0
AUR62012469 Chenopodium quinoa HOM05D000198 ORTHO05D004339 3.4e-10 67.8 46 52.2
MBI15_g07759_MAGBIO Magnolia biondii HOM05D000198 ORTHO05D004339 3.4e-10 67.8 46 58.7
Potri.006G186800 Populus trichocarpa HOM05D000198 ORTHO05D004339 3.4e-10 67.8 46 58.7
Sc06g0000390 Simmondsia chinensis HOM05D000198 ORTHO05D004339 3.4e-10 67.8 46 54.3
Mapoly0004s0248 Marchantia polymorpha HOM05D000198 ORTHO05D004339 4.5e-10 67.4 46 58.7
Sp4g03260 Schrenkiella parvula HOM05D000198 ORTHO05D004339 4.5e-10 67.4 46 56.5
MSTRG.6131 Avicennia marina HOM05D000198 ORTHO05D004339 5.9e-10 67.0 46 56.5
BcaC07g40944 Brassica carinata HOM05D000198 ORTHO05D004339 5.9e-10 67.0 46 56.5
C08p39350 Brassica napus HOM05D000198 ORTHO05D004339 5.9e-10 67.0 46 56.5
CiPaw.16G114600 Carya illinoinensis HOM05D000198 ORTHO05D004339 5.9e-10 67.0 46 58.7
Eucgr.C02594 Eucalyptus grandis HOM05D000198 ORTHO05D004339 5.9e-10 67.0 46 58.7
Hma1.2p1_0059F.1_g032620 Hydrangea macrophylla HOM05D000198 ORTHO05D004339 5.9e-10 67.0 45 57.8
Peaxi162Scf00347g01016 Petunia axillaris HOM05D000198 ORTHO05D004339 5.9e-10 67.0 46 56.5
Actinidia38678 Actinidia chinensis HOM05D000198 ORTHO05D004339 7.7e-10 66.6 46 56.5
AUR62031595 Chenopodium quinoa HOM05D000198 ORTHO05D004339 7.7e-10 66.6 46 52.2
Gohir.D05G053300 Gossypium hirsutum HOM05D000198 ORTHO05D004339 7.7e-10 66.6 46 54.3
Gorai.009G055100 Gossypium raimondii HOM05D000198 ORTHO05D004339 7.7e-10 66.6 46 54.3
Lj4g0028164 Lotus japonicus HOM05D000198 ORTHO05D004339 7.7e-10 66.6 46 56.5
Oeu021259.1 Olea europaea HOM05D000198 ORTHO05D004339 7.7e-10 66.6 46 56.5
Pp3c23_8060 Physcomitrium patens HOM05D000198 ORTHO05D004339 7.7e-10 66.6 46 54.3
Pp3c23_8061 Physcomitrium patens HOM05D000198 ORTHO05D004339 7.7e-10 66.6 46 54.3
ATR0739G034 Amborella trichopoda HOM05D000198 ORTHO05D004339 1.0e-09 66.2 46 56.5
BcaC02g08484 Brassica carinata HOM05D000198 ORTHO05D004339 1.0e-09 66.2 46 56.5
A04p18560 Brassica napus HOM05D000198 ORTHO05D004339 1.0e-09 66.2 46 56.5
C04p53810 Brassica napus HOM05D000198 ORTHO05D004339 1.0e-09 66.2 46 56.5
BolC4t26936H Brassica oleracea HOM05D000198 ORTHO05D004339 1.0e-09 66.2 46 56.5
BraA04t17466Z Brassica rapa HOM05D000198 ORTHO05D004339 1.0e-09 66.2 46 56.5
CARHR117830 Cardamine hirsuta HOM05D000198 ORTHO05D004339 1.0e-09 66.2 46 54.3
Thecc.09G033100 Theobroma cacao HOM05D000198 ORTHO05D004339 1.0e-09 66.2 46 54.3
COL.COLO4_18782 Corchorus olitorius HOM05D000198 ORTHO05D004339 1.3e-09 65.9 46 54.3
Duzib168G0515 Durio zibethinus HOM05D000198 ORTHO05D004339 1.3e-09 65.9 46 54.3
Gohir.A07G026600 Gossypium hirsutum HOM05D000198 ORTHO05D004339 1.3e-09 65.9 46 56.5
SalBow1G4943 Salvia bowleyana HOM05D000198 ORTHO05D004339 1.3e-09 65.9 46 52.2
GSVIVG01023590001 Vitis vinifera HOM05D000198 ORTHO05D004339 1.3e-09 65.9 46 54.3
Ah.10g035520 Amaranthus hybridus HOM05D000198 ORTHO05D004339 1.7e-09 65.5 46 50.0
AL4G14600 Arabidopsis lyrata HOM05D000198 ORTHO05D004339 1.7e-09 65.5 46 54.3
AT2G24270 Arabidopsis thaliana HOM05D000198 ORTHO05D004339 1.7e-09 65.5 46 54.3
arahy.Tifrunner.gnm1.ann1.5CRU8P Arachis hypogaea HOM05D000198 ORTHO05D004339 1.7e-09 65.5 46 54.3
arahy.Tifrunner.gnm1.ann1.U9DM18 Arachis hypogaea HOM05D000198 ORTHO05D004339 1.7e-09 65.5 46 54.3
Haze_19229 Corylus avellana HOM05D000198 ORTHO05D004339 1.7e-09 65.5 46 56.5
Hma1.2p1_0059F.1_g032605 Hydrangea macrophylla HOM05D000198 ORTHO05D004339 1.7e-09 65.5 45 55.6
Hma1.2p1_0059F.1_g032610 Hydrangea macrophylla HOM05D000198 ORTHO05D004339 1.7e-09 65.5 45 55.6
Lj6g0004658 Lotus japonicus HOM05D000198 ORTHO05D004339 1.7e-09 65.5 46 58.7
Medtr4g131180 Medicago truncatula HOM05D000198 ORTHO05D004339 1.7e-09 65.5 40 65.0
Rhsim03G0256500 Rhododendron simsii HOM05D000198 ORTHO05D004339 1.7e-09 65.5 46 56.5
TPR.G39225 Trifolium pratense HOM05D000198 ORTHO05D004339 1.7e-09 65.5 40 65.0
Aa31LG7G12540 Aethionema arabicum HOM05D000198 ORTHO05D004339 2.2e-09 65.1 46 54.3
EL10Ac2g04127 Beta vulgaris HOM05D000198 ORTHO05D004339 2.2e-09 65.1 46 50.0
Gohir.A05G051800 Gossypium hirsutum HOM05D000198 ORTHO05D004339 2.2e-09 65.1 46 52.2
MD15G1154800 Malus domestica HOM05D000198 ORTHO05D004339 2.2e-09 65.1 46 56.5
Phvul.003G157200 Phaseolus vulgaris HOM05D000198 ORTHO05D004339 2.2e-09 65.1 48 52.1
CAN.G1424.2 Capsicum annuum HOM05D000198 ORTHO05D004339 2.9e-09 64.7 46 54.3
Haze_21429 Corylus avellana HOM05D000198 ORTHO05D004339 2.9e-09 64.7 46 56.5
Gorai.001G031700 Gossypium raimondii HOM05D000198 ORTHO05D004339 2.9e-09 64.7 46 54.3
Nitab4.5_0003802g0020 Nicotiana tabacum HOM05D000198 ORTHO05D004339 2.9e-09 64.7 51 49.0
Psat4g008600 Pisum sativum HOM05D000198 ORTHO05D004339 2.9e-09 64.7 40 62.5
Solyc07g005390.3 Solanum lycopersicum HOM05D000198 ORTHO05D004339 2.9e-09 64.7 46 54.3
Sopen07g001390 Solanum pennellii HOM05D000198 ORTHO05D004339 2.9e-09 64.7 46 54.3
PGSC0003DMG400011132 Solanum tuberosum HOM05D000198 ORTHO05D004339 2.9e-09 64.7 46 54.3
arahy.Tifrunner.gnm1.ann1.U399DB Arachis hypogaea HOM05D000198 ORTHO05D004339 3.8e-09 64.3 46 54.3
arahy.Tifrunner.gnm1.ann1.UG6CYA Arachis hypogaea HOM05D000198 ORTHO05D004339 3.8e-09 64.3 46 54.3
DCAR_019381 Daucus carota HOM05D000198 ORTHO05D004339 3.8e-09 64.3 46 52.2
Dinv42875 Davidia involucrata HOM05D000198 ORTHO05D004339 3.8e-09 64.3 46 52.2
Dinv43225 Davidia involucrata HOM05D000198 ORTHO05D004339 3.8e-09 64.3 46 52.2
Psat6g027400 Pisum sativum HOM05D000198 ORTHO05D004339 3.8e-09 64.3 46 54.3
SGA_v2.0_scaffold265G46114 Striga asiatica HOM05D000198 ORTHO05D004339 3.8e-09 64.3 46 52.2
Carub.0004s0360 Capsella rubella HOM05D000198 ORTHO05D004339 5.0e-09 63.9 46 52.2
CiPaw.15G174700 Carya illinoinensis HOM05D000198 ORTHO05D004339 5.0e-09 63.9 40 62.5
Ca_21114_v3 Cicer arietinum L. HOM05D000198 ORTHO05D004339 5.0e-09 63.9 40 62.5
Cc06_g15190 Coffea canephora HOM05D000198 ORTHO05D004339 5.0e-09 63.9 46 56.5
Phvul.001G045700 Phaseolus vulgaris HOM05D000198 ORTHO05D004339 5.0e-09 63.9 46 54.3
Sed0026764 Sechium edule HOM05D000198 ORTHO05D004339 5.0e-09 63.9 46 52.2
GSVIVG01035891001 Vitis vinifera HOM05D000198 ORTHO05D004339 5.0e-09 63.9 46 54.3
Migut.J01334 Erythranthe guttata HOM05D000198 ORTHO05D004339 6.5e-09 63.5 46 52.2
FAN19G1357 Fragaria x ananassa HOM05D000198 ORTHO05D004339 6.5e-09 63.5 46 54.3
FAN23G1908 Fragaria x ananassa HOM05D000198 ORTHO05D004339 6.5e-09 63.5 46 54.3
FAN26G2631 Fragaria x ananassa HOM05D000198 ORTHO05D004339 6.5e-09 63.5 46 54.3
FAN28G0506 Fragaria x ananassa HOM05D000198 ORTHO05D004339 6.5e-09 63.5 46 54.3
Hma1.2p1_0222F.1_g093350 Hydrangea macrophylla HOM05D000198 ORTHO05D004339 6.5e-09 63.5 46 52.2
Nitab4.5_0009510g0020 Nicotiana tabacum HOM05D000198 ORTHO05D004339 6.5e-09 63.5 46 52.2
RcHm_v2.0_Chr2g0085921 Rosa chinensis HOM05D000198 ORTHO05D004339 6.5e-09 63.5 46 54.3
TAR636G3682 Trochodendron aralioides HOM05D000198 ORTHO05D004339 6.5e-09 63.5 40 62.5
vmacro06088 Vaccinium macrocarpon HOM05D000198 ORTHO05D004339 6.5e-09 63.5 46 54.3
HPP92_027319 Vanilla planifolia HOM05D000198 ORTHO05D004339 6.5e-09 63.5 46 52.2
Cfa020844 Carpinus fangiana HOM05D000198 ORTHO05D004339 8.5e-09 63.2 46 54.3
Os08g0440800 Oryza sativa ssp. japonica HOM05D000198 ORTHO05D004339 8.5e-09 63.2 50 46.0
PGR102G2988 Punica granatum HOM05D000198 ORTHO05D004339 8.5e-09 63.2 48 58.3
SMO358G0131 Selaginella moellendorffii HOM05D000198 ORTHO05D004339 8.5e-09 63.2 48 50.0
Hund19593 Selenicereus undatus HOM05D000198 ORTHO05D004339 8.5e-09 63.2 46 50.0
TPR.G38833 Trifolium pratense HOM05D000198 ORTHO05D004339 8.5e-09 63.2 46 52.2
Glyma.14G109150 Glycine max HOM05D000198 ORTHO05D004339 1.1e-08 62.8 46 52.2
Glyma.17G218200 Glycine max HOM05D000198 ORTHO05D004339 1.1e-08 62.8 46 54.3
Gohir.D07G030500 Gossypium hirsutum HOM05D000198 ORTHO05D004339 1.1e-08 62.8 46 52.2
HanXRQChr03g0084911 Helianthus annuus HOM05D000198 ORTHO05D004339 1.1e-08 62.8 43 62.8
Lsat_1_v5_gn_6_77661 Lactuca sativa HOM05D000198 ORTHO05D004339 1.1e-08 62.8 42 59.5
Lsat_1_v5_gn_7_48761 Lactuca sativa HOM05D000198 ORTHO05D004339 1.1e-08 62.8 46 50.0
Lalb_Chr13g0300931 Lupinus albus HOM05D000198 ORTHO05D004339 1.1e-08 62.8 46 52.2
Potri.018G020600 Populus trichocarpa HOM05D000198 ORTHO05D004339 1.1e-08 62.8 48 58.3
MD02G1009300 Malus domestica HOM05D000198 ORTHO05D004339 1.4e-08 62.4 46 52.2
QL02p092772 Quercus lobata HOM05D000198 ORTHO05D004339 1.4e-08 62.4 47 55.3
QL04p047283 Quercus lobata HOM05D000198 ORTHO05D004339 1.4e-08 62.4 47 55.3
Ciclev10008091m.g Citrus clementina HOM05D000198 ORTHO05D004339 1.9e-08 62.0 46 52.2
ECA240G1143 Erigeron canadensis HOM05D000198 ORTHO05D004339 2.5e-08 61.6 46 47.8
Zm00001eb179810 Zea mays HOM05D000198 ORTHO05D004339 2.5e-08 61.6 46 50.0
Cfa013071 Carpinus fangiana HOM05D000198 ORTHO05D004339 3.2e-08 61.2 46 52.2
CsaV3_2G003650 Cucumis sativus L. HOM05D000198 ORTHO05D004339 3.2e-08 61.2 44 50.0
FvH4_1g01130 Fragaria vesca HOM05D000198 ORTHO05D004339 3.2e-08 61.2 44 54.5
CANSAT11G0600 Cannabis sativa HOM05D000198 ORTHO05D004339 4.2e-08 60.8 46 50.0
Duzib168G0913 Durio zibethinus HOM05D000198 ORTHO05D004339 4.2e-08 60.8 47 57.4
Atru.chr7.65 Acer truncatum HOM05D000198 ORTHO05D004339 5.5e-08 60.5 47 53.2
Lj7A456G16 Lonicera japonica HOM05D000198 ORTHO05D004339 5.5e-08 60.5 46 52.2
Medtr1g014320 Medicago truncatula HOM05D000198 ORTHO05D004339 5.5e-08 60.5 46 50.0
Thecc.09G017000 Theobroma cacao HOM05D000198 ORTHO05D004339 5.5e-08 60.5 52 51.9
Lalb_Chr07g0179771 Lupinus albus HOM05D000198 ORTHO05D004339 7.2e-08 60.1 46 50.0
Manes.16G128400 Manihot esculenta HOM05D000198 ORTHO05D004339 7.2e-08 60.1 47 55.3
Pp3c24_10620 Physcomitrium patens HOM05D000198 ORTHO05D004339 7.2e-08 60.1 46 50.0
AagrBONN_evm.TU.Sc2ySwM_117.1579 Anthoceros agrestis HOM05D000198 ORTHO05D004339 9.4e-08 59.7 46 50.0
HanXRQChr03g0064801 Helianthus annuus HOM05D000198 ORTHO05D004339 9.4e-08 59.7 46 50.0
Gorai.009G061700 Gossypium raimondii HOM05D000198 ORTHO05D004339 1.2e-07 59.3 47 55.3
Manes.14G112200 Manihot esculenta HOM05D000198 ORTHO05D004339 1.2e-07 59.3 47 53.2
Prupe.7G260700 Prunus persica HOM05D000198 ORTHO05D004339 1.6e-07 58.9 40 55.0
SMO141G0018 Selaginella moellendorffii HOM05D000198 ORTHO05D004339 1.6e-07 58.9 45 53.3
SMO364G0858 Selaginella moellendorffii HOM05D000198 ORTHO05D004339 2.1e-07 58.5 45 53.3
Eucgr.C01646 Eucalyptus grandis HOM05D000198 ORTHO05D004339 2.7e-07 58.2 47 53.2
Eucgr.C01947 Eucalyptus grandis HOM05D000198 ORTHO05D004339 2.7e-07 58.2 47 53.2
Gohir.D05G060600 Gossypium hirsutum HOM05D000198 ORTHO05D004339 3.6e-07 57.8 47 53.2
PSO170G1981 Papaver somniferum HOM05D000198 ORTHO05D004339 3.6e-07 57.8 48 52.1
Pp3c24_6780 Physcomitrium patens HOM05D000198 ORTHO05D004339 3.6e-07 57.8 46 54.3
Gohir.A05G058500 Gossypium hirsutum HOM05D000198 ORTHO05D004339 4.6e-07 57.4 43 58.1
Sabra18G0023000 Salix brachista HOM05D000198 ORTHO05D004339 6.1e-07 57.0 48 52.1
unitig_748.g7190 Utricularia gibba HOM05D000198 ORTHO05D004339 6.1e-07 57.0 46 43.5
Dinv41393 Davidia involucrata HOM05D000198 ORTHO05D004339 7.9e-07 56.6 49 51.0
PSO017G3016 Papaver somniferum HOM05D000198 ORTHO05D004339 1.8e-06 55.5 48 52.1
SHI21055 Sapria himalayana HOM05D000198 ORTHO05D004339 2.3e-06 55.1 47 48.9
Lj5g0008535 Lotus japonicus HOM05D000198 ORTHO05D004339 3.9e-06 54.3 49 51.0


User provided reference genes

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