Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c17_23530 Physcomitrium patens HOM05D005285 ORTHO05D006829 1.0e-215 753.1 362 100.0
AagrBONN_evm.TU.Sc2ySwM_228.3236 Anthoceros agrestis HOM05D005285 ORTHO05D006829 1.6e-136 490.0 382 63.6
Mapoly0019s0106 Marchantia polymorpha HOM05D005285 ORTHO05D006829 1.5e-129 466.8 385 61.6
CDE04G1667 Ceratophyllum demersum HOM05D005285 ORTHO05D006829 4.7e-128 461.8 386 59.1
Pp3c14_26250 Physcomitrium patens HOM05D005285 ORTHO05D006829 4.7e-128 461.8 302 75.5
SMO364G0792 Selaginella moellendorffii HOM05D005285 ORTHO05D006829 1.4e-127 460.3 384 60.2
SEGI_06931 Sequoiadendron giganteum HOM05D005285 ORTHO05D006829 2.3e-127 459.5 385 59.2
ATR0605G013 Amborella trichopoda HOM05D005285 ORTHO05D006829 7.5e-126 454.5 386 58.0
RcHm_v2.0_Chr1g0314801 Rosa chinensis HOM05D005285 ORTHO05D006829 7.5e-126 454.5 335 63.3
TAR636G1692 Trochodendron aralioides HOM05D005285 ORTHO05D006829 7.5e-126 454.5 385 58.7
THA.LOC104819060 Tarenaya hassleriana HOM05D005285 ORTHO05D006829 9.8e-126 454.1 385 58.4
FAN03G1002 Fragaria x ananassa HOM05D005285 ORTHO05D006829 1.7e-125 453.4 385 57.1
unitig_26.g9596 Utricularia gibba HOM05D005285 ORTHO05D006829 1.7e-125 453.4 386 59.1
MSTRG.20606 Avicennia marina HOM05D005285 ORTHO05D006829 2.2e-125 453.0 385 56.4
Cpa.g.sc234.2 Carica papaya HOM05D005285 ORTHO05D006829 6.4e-125 451.4 385 58.2
Migut.B01343 Erythranthe guttata HOM05D005285 ORTHO05D006829 8.3e-125 451.1 385 56.9
Rhsim01G0131200 Rhododendron simsii HOM05D005285 ORTHO05D006829 1.4e-124 450.3 386 57.5
Actinidia20684 Actinidia chinensis HOM05D005285 ORTHO05D006829 1.8e-124 449.9 385 57.9
Thhalv10004473m.g Eutrema salsugineum HOM05D005285 ORTHO05D006829 1.8e-124 449.9 385 57.1
Lj9A629T99 Lonicera japonica HOM05D005285 ORTHO05D006829 3.2e-124 449.1 384 57.6
QL04p004838 Quercus lobata HOM05D005285 ORTHO05D006829 4.1e-124 448.7 386 57.5
Haze_03242 Corylus avellana HOM05D005285 ORTHO05D006829 5.4e-124 448.4 385 57.4
FvH4_7g00610 Fragaria vesca HOM05D005285 ORTHO05D006829 7.0e-124 448.0 335 62.1
Eucgr.J01257 Eucalyptus grandis HOM05D005285 ORTHO05D006829 9.2e-124 447.6 385 58.7
FAN01G1197 Fragaria x ananassa HOM05D005285 ORTHO05D006829 1.6e-123 446.8 385 56.4
ECA248G0026 Erigeron canadensis HOM05D005285 ORTHO05D006829 2.0e-123 446.4 338 62.7
FAN10G3755 Fragaria x ananassa HOM05D005285 ORTHO05D006829 2.0e-123 446.4 335 61.8
Gohir.A08G026900 Gossypium hirsutum HOM05D005285 ORTHO05D006829 2.0e-123 446.4 385 56.4
Glyma.12G239400 Glycine max HOM05D005285 ORTHO05D006829 2.7e-123 446.0 335 63.6
Peaxi162Scf00042g00510 Petunia axillaris HOM05D005285 ORTHO05D006829 2.7e-123 446.0 385 57.1
CSS0013341 Camellia sinensis var. sinensis HOM05D005285 ORTHO05D006829 3.5e-123 445.7 385 57.7
MD07G1005600 Malus domestica HOM05D005285 ORTHO05D006829 3.5e-123 445.7 339 61.4
PGR044G0372 Punica granatum HOM05D005285 ORTHO05D006829 3.5e-123 445.7 385 56.9
Dinv09380 Davidia involucrata HOM05D005285 ORTHO05D006829 4.6e-123 445.3 386 57.0
FAN06G0391 Fragaria x ananassa HOM05D005285 ORTHO05D006829 4.6e-123 445.3 335 61.5
Sp2g18470 Schrenkiella parvula HOM05D005285 ORTHO05D006829 4.6e-123 445.3 382 57.6
Nn7g36086 Nelumbo nucifera HOM05D005285 ORTHO05D006829 5.9e-123 444.9 385 56.9
SalBow5G3096 Salvia bowleyana HOM05D005285 ORTHO05D006829 5.9e-123 444.9 385 56.4
MBI04_g14265_MAGBIO Magnolia biondii HOM05D005285 ORTHO05D006829 1.0e-122 444.1 385 56.9
MD02G1316300 Malus domestica HOM05D005285 ORTHO05D006829 1.0e-122 444.1 339 61.4
GSVIVG01032048001 Vitis vinifera HOM05D005285 ORTHO05D006829 1.0e-122 444.1 385 56.1
BcaC06g30830 Brassica carinata HOM05D005285 ORTHO05D006829 1.3e-122 443.7 385 57.7
A06p39410 Brassica napus HOM05D005285 ORTHO05D006829 1.3e-122 443.7 385 57.7
BraA06t26856Z Brassica rapa HOM05D005285 ORTHO05D006829 1.3e-122 443.7 385 57.7
Ciclev10031943m.g Citrus clementina HOM05D005285 ORTHO05D006829 1.3e-122 443.7 338 62.1
Aqoxy2G00109 Aquilegia oxysepala HOM05D005285 ORTHO05D006829 1.7e-122 443.4 335 61.5
Cfa010729 Carpinus fangiana HOM05D005285 ORTHO05D006829 1.7e-122 443.4 385 56.9
Ca_23856_v3 Cicer arietinum L. HOM05D005285 ORTHO05D006829 2.3e-122 443.0 333 63.7
SalBow5G3836 Salvia bowleyana HOM05D005285 ORTHO05D006829 2.3e-122 443.0 385 56.1
Zm00001eb189240 Zea mays HOM05D005285 ORTHO05D006829 2.3e-122 443.0 382 57.9
Oeu064272.1 Olea europaea HOM05D005285 ORTHO05D006829 3.9e-122 442.2 384 56.0
PSO339G1127 Papaver somniferum HOM05D005285 ORTHO05D006829 3.9e-122 442.2 382 58.1
Aa31LG11G7560 Aethionema arabicum HOM05D005285 ORTHO05D006829 5.0e-122 441.8 382 58.1
AL8G20280 Arabidopsis lyrata HOM05D005285 ORTHO05D006829 6.6e-122 441.4 336 62.5
Gorai.004G035700 Gossypium raimondii HOM05D005285 ORTHO05D006829 8.6e-122 441.0 385 55.8
Manes.10G147800 Manihot esculenta HOM05D005285 ORTHO05D006829 8.6e-122 441.0 385 57.4
SGA_v2.0_scaffold646G53323 Striga asiatica HOM05D005285 ORTHO05D006829 1.1e-121 440.7 384 56.0
Gohir.D08G037700 Gossypium hirsutum HOM05D005285 ORTHO05D006829 1.9e-121 439.9 385 55.8
Thecc.01G414500 Theobroma cacao HOM05D005285 ORTHO05D006829 1.9e-121 439.9 385 56.1
TWI09G0675 Tripterygium wilfordii HOM05D005285 ORTHO05D006829 2.5e-121 439.5 385 56.6
AT5G48020 Arabidopsis thaliana HOM05D005285 ORTHO05D006829 3.3e-121 439.1 336 62.2
arahy.Tifrunner.gnm1.ann1.DICK3U Arachis hypogaea HOM05D005285 ORTHO05D006829 4.3e-121 438.7 326 63.5
Nitab4.5_0002012g0040 Nicotiana tabacum HOM05D005285 ORTHO05D006829 4.3e-121 438.7 382 56.5
CANSAT21G0587 Cannabis sativa HOM05D005285 ORTHO05D006829 5.6e-121 438.3 335 62.4
DCAR_029637 Daucus carota HOM05D005285 ORTHO05D006829 7.3e-121 438.0 385 57.9
Phvul.011G213800 Phaseolus vulgaris HOM05D005285 ORTHO05D006829 7.3e-121 438.0 326 63.5
Potri.001G271100 Populus trichocarpa HOM05D005285 ORTHO05D006829 7.3e-121 438.0 385 56.4
MELO3C023957.2 Cucumis melo HOM05D005285 ORTHO05D006829 9.5e-121 437.6 386 55.7
VMungo1127G2059 Vigna mungo HOM05D005285 ORTHO05D006829 9.5e-121 437.6 326 63.8
BolC7t44405H Brassica oleracea HOM05D005285 ORTHO05D006829 1.2e-120 437.2 385 56.9
Lsat_1_v5_gn_1_109141 Lactuca sativa HOM05D005285 ORTHO05D006829 1.2e-120 437.2 385 54.3
Medtr8g036165 Medicago truncatula HOM05D005285 ORTHO05D006829 1.2e-120 437.2 336 61.9
CsaV3_3G032330 Cucumis sativus L. HOM05D005285 ORTHO05D006829 1.6e-120 436.8 385 55.8
Lj3g0011351 Lotus japonicus HOM05D005285 ORTHO05D006829 1.6e-120 436.8 335 62.4
Carub.0008s0757 Capsella rubella HOM05D005285 ORTHO05D006829 2.1e-120 436.4 333 62.5
CARHR184290 Cardamine hirsuta HOM05D005285 ORTHO05D006829 2.1e-120 436.4 327 63.9
PSO384G1382 Papaver somniferum HOM05D005285 ORTHO05D006829 2.1e-120 436.4 382 57.3
C07p38860 Brassica napus HOM05D005285 ORTHO05D006829 4.7e-120 435.3 385 56.9
AUR62023050 Chenopodium quinoa HOM05D005285 ORTHO05D006829 4.7e-120 435.3 385 55.8
ClCG10G012540 Citrullus lanatus HOM05D005285 ORTHO05D006829 4.7e-120 435.3 382 55.8
EL10Ac2g04308 Beta vulgaris HOM05D005285 ORTHO05D006829 6.2e-120 434.9 382 57.3
Nitab4.5_0000050g0030 Nicotiana tabacum HOM05D005285 ORTHO05D006829 8.0e-120 434.5 382 56.5
Oeu039102.1 Olea europaea HOM05D005285 ORTHO05D006829 1.0e-119 434.1 386 54.9
Psat4g195080 Pisum sativum HOM05D005285 ORTHO05D006829 1.0e-119 434.1 333 61.9
Hund03676 Selenicereus undatus HOM05D005285 ORTHO05D006829 1.0e-119 434.1 337 61.1
Eucgr.J01254 Eucalyptus grandis HOM05D005285 ORTHO05D006829 1.4e-119 433.7 385 55.8
Sed0014745 Sechium edule HOM05D005285 ORTHO05D006829 1.4e-119 433.7 385 55.8
Cc02_g27470 Coffea canephora HOM05D005285 ORTHO05D006829 1.8e-119 433.3 385 55.6
COL.COLO4_23903 Corchorus olitorius HOM05D005285 ORTHO05D006829 1.8e-119 433.3 379 56.7
Eucgr.J01253 Eucalyptus grandis HOM05D005285 ORTHO05D006829 1.8e-119 433.3 385 55.6
Eucgr.J01256 Eucalyptus grandis HOM05D005285 ORTHO05D006829 1.8e-119 433.3 385 55.6
Os02g0717500 Oryza sativa ssp. japonica HOM05D005285 ORTHO05D006829 3.1e-119 432.6 382 55.8
Hma1.2p1_1011F.1_g247500 Hydrangea macrophylla HOM05D005285 ORTHO05D006829 1.2e-118 430.6 358 58.4
Lalb_Chr03g0033921 Lupinus albus HOM05D005285 ORTHO05D006829 1.2e-118 430.6 326 62.0
Duzib268G1126 Durio zibethinus HOM05D005285 ORTHO05D006829 2.6e-118 429.5 343 59.2
Sopen10g011740 Solanum pennellii HOM05D005285 ORTHO05D006829 4.4e-118 428.7 385 55.6
TWI53G0546 Tripterygium wilfordii HOM05D005285 ORTHO05D006829 9.8e-118 427.6 330 60.9
Hund03675 Selenicereus undatus HOM05D005285 ORTHO05D006829 1.7e-117 426.8 369 56.4
ECA248G2079 Erigeron canadensis HOM05D005285 ORTHO05D006829 3.0e-114 416.0 382 52.9
Lj9C629T1 Lonicera japonica HOM05D005285 ORTHO05D006829 6.6e-114 414.8 379 55.7
HanXRQChr11g0330581 Helianthus annuus HOM05D005285 ORTHO05D006829 1.1e-113 414.1 383 52.5
FAN01G1198 Fragaria x ananassa HOM05D005285 ORTHO05D006829 9.5e-113 411.0 477 45.9
Lsat_1_v5_gn_1_111020 Lactuca sativa HOM05D005285 ORTHO05D006829 1.2e-112 410.6 327 57.5
vmacro21170 Vaccinium macrocarpon HOM05D005285 ORTHO05D006829 1.6e-112 410.2 438 50.5
AUR62009369 Chenopodium quinoa HOM05D005285 ORTHO05D006829 5.2e-111 405.2 306 62.7
Sabra16G0166500 Salix brachista HOM05D005285 ORTHO05D006829 2.0e-110 403.3 456 47.4
QL04p004868 Quercus lobata HOM05D005285 ORTHO05D006829 2.6e-110 402.9 327 57.5
QL04p004878 Quercus lobata HOM05D005285 ORTHO05D006829 2.6e-110 402.9 327 57.2
ECA248G2524 Erigeron canadensis HOM05D005285 ORTHO05D006829 1.3e-109 400.6 384 50.3
QL04p004849 Quercus lobata HOM05D005285 ORTHO05D006829 3.7e-109 399.1 332 56.0
HanXRQChr11g0330561 Helianthus annuus HOM05D005285 ORTHO05D006829 4.6e-107 392.1 382 48.7
SGA_v2.0_scaffold646G53324 Striga asiatica HOM05D005285 ORTHO05D006829 7.8e-107 391.3 475 44.2
Atru.chr11.2010 Acer truncatum HOM05D005285 ORTHO05D006829 1.6e-104 383.6 379 51.5
Prupe.2G008000 Prunus persica HOM05D005285 ORTHO05D006829 1.9e-100 370.2 246 69.1
Prupe.2G008200 Prunus persica HOM05D005285 ORTHO05D006829 2.4e-100 369.8 246 68.3
Atru.chr11.2632 Acer truncatum HOM05D005285 ORTHO05D006829 3.5e-99 365.9 411 49.4
SHI04065 Sapria himalayana HOM05D000259 ORTHO05D000155 9.0e-95 351.3 510 38.0
Cre13.g586400 Chlamydomonas reinhardtii HOM05D005285 ORTHO05D006829 1.9e-92 343.6 349 50.1
Sed0008744 Sechium edule HOM05D005285 ORTHO05D006829 4.3e-89 332.4 356 50.3
Sc11g0009350 Simmondsia chinensis HOM05D005285 ORTHO05D006829 5.3e-87 325.5 253 61.3
Ca_24082_v3 Cicer arietinum L. HOM05D005285 ORTHO05D006829 2.2e-85 320.1 297 51.9
HPP92_022786 Vanilla planifolia HOM05D005285 ORTHO05D006829 3.2e-84 316.2 300 55.0
Lsat_1_v5_gn_1_72821 Lactuca sativa HOM05D005285 ORTHO05D006829 1.1e-73 281.2 372 40.6
HanXRQChr01g0017351 Helianthus annuus HOM05D005285 ORTHO05D006829 3.7e-64 249.6 175 64.6
TPR.G21737 Trifolium pratense HOM05D005285 ORTHO05D006829 4.5e-62 242.7 164 69.5
Eucgr.L03705 Eucalyptus grandis HOM05D005285 ORTHO05D006829 5.1e-58 229.2 178 62.9
Solyc10g037960.3 Solanum lycopersicum HOM05D005285 ORTHO05D006829 5.1e-58 229.2 194 58.2
arahy.Tifrunner.gnm1.ann1.A7HRCY Arachis hypogaea HOM05D005285 ORTHO05D006829 1.7e-56 224.2 256 46.1
HanXRQChr11g0330591 Helianthus annuus HOM05D005285 ORTHO05D006829 2.2e-56 223.8 195 52.8
Ca_24079_v3 Cicer arietinum L. HOM05D005285 ORTHO05D006829 2.5e-52 210.3 349 37.0
Solyc10g037950.2 Solanum lycopersicum HOM05D005285 ORTHO05D006829 9.4e-52 208.4 226 47.3
TPR.G21746 Trifolium pratense HOM05D005285 ORTHO05D006829 9.4e-44 181.8 160 54.4
HanXRQChr11g0330601 Helianthus annuus HOM05D005285 ORTHO05D006829 8.5e-37 158.7 106 66.0
Peaxi162Scf00451g00621 Petunia axillaris HOM05D005285 ORTHO05D006829 2.5e-36 157.1 168 51.2
Cpa.g.sc2760.1 Carica papaya HOM05D005285 ORTHO05D006829 1.2e-35 154.8 201 40.3
Rhsim06G0016300 Rhododendron simsii HOM05D005285 ORTHO05D006829 4.4e-33 146.4 97 64.9
Oeu039103.1 Olea europaea HOM05D005285 ORTHO05D008854 4.0e-26 123.2 92 62.0
Actinidia21565 Actinidia chinensis HOM05D005285 ORTHO05D006829 8.3e-24 115.5 105 55.2
Atru.ctg794.7 Acer truncatum HOM05D005285 ORTHO05D037890 3.3e-20 103.6 136 42.6
vmacro21176 Vaccinium macrocarpon HOM05D005285 ORTHO05D006829 1.4e-15 88.2 57 71.9
Atru.chr13.2215 Acer truncatum HOM05D005285 ORTHO05D037890 1.6e-14 84.7 55 67.3
Oeu039101.1 Olea europaea HOM05D000288 ORTHO05D000173 4.5e-14 83.2 114 40.4
TPR.G13313 Trifolium pratense HOM05D005285 ORTHO05D413460 1.1e-12 78.6 77 53.2
arahy.Tifrunner.gnm1.ann1.J91U4H Arachis hypogaea HOM05D000001 ORTHO05D004533 4.3e-12 76.6 62 54.8
VMungo1127G1344 Vigna mungo HOM05D000839 ORTHO05D000664 1.8e-10 71.2 48 64.6
Lsat_1_v5_gn_0_6420 Lactuca sativa HOM05D002112 ORTHO05D007960 8.9e-10 68.9 81 44.4
arahy.Tifrunner.gnm1.ann1.43BKZS Arachis hypogaea HOM05D000001 ORTHO05D000003 1.2e-09 68.6 52 59.6
TPR.G1074 Trifolium pratense HOM05D005285 ORTHO05D411165 9.2e-07 58.9 74 43.2
VMungo1309G1919 Vigna mungo HOM05D000206 ORTHO05D000232 9.2e-07 58.9 146 28.1
CDE07G0090 Ceratophyllum demersum HOM05D000288 ORTHO05D000173 2.0e-06 57.8 35 68.6


User provided reference genes

Program Settings