Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c17_23010 Physcomitrium patens HOM05D006528 ORTHO05D008117 1.2e-57 226.5 129 100.0
Mapoly0189s0006 Marchantia polymorpha HOM05D006528 ORTHO05D008117 2.8e-27 125.6 82 74.4
SEGI_09895 Sequoiadendron giganteum HOM05D006528 ORTHO05D008117 3.1e-26 122.1 82 73.2
SMO358G0255 Selaginella moellendorffii HOM05D006528 ORTHO05D008117 4.1e-26 121.7 80 72.5
HPP92_001604 Vanilla planifolia HOM05D006528 ORTHO05D008117 1.2e-25 120.2 79 74.7
Zm00001eb053530 Zea mays HOM05D006528 ORTHO05D008117 4.5e-25 118.2 79 72.2
arahy.Tifrunner.gnm1.ann1.P7ITSZ Arachis hypogaea HOM05D006528 ORTHO05D008117 7.8e-25 117.5 78 70.5
Lsat_1_v5_gn_5_110181 Lactuca sativa HOM05D006528 ORTHO05D008117 7.8e-25 117.5 82 72.0
PGR142G2367 Punica granatum HOM05D006528 ORTHO05D008117 7.8e-25 117.5 81 69.1
ATR0767G170 Amborella trichopoda HOM05D006528 ORTHO05D008117 1.0e-24 117.1 82 69.5
arahy.Tifrunner.gnm1.ann1.AY2SMN Arachis hypogaea HOM05D006528 ORTHO05D008117 1.0e-24 117.1 78 70.5
Ca_00167_v3 Cicer arietinum L. HOM05D006528 ORTHO05D008117 2.3e-24 115.9 86 65.1
Migut.B00544 Erythranthe guttata HOM05D006528 ORTHO05D008117 2.9e-24 115.5 78 70.5
Nn5g29836 Nelumbo nucifera HOM05D006528 ORTHO05D008117 2.9e-24 115.5 89 65.2
Thecc.02G128200 Theobroma cacao HOM05D006528 ORTHO05D008117 2.9e-24 115.5 88 63.6
HanXRQChr08g0227171 Helianthus annuus HOM05D006528 ORTHO05D008117 3.8e-24 115.2 89 62.9
Potri.007G116400 Populus trichocarpa HOM05D006528 ORTHO05D008117 3.8e-24 115.2 78 70.5
CSS0011274 Camellia sinensis var. sinensis HOM05D006528 ORTHO05D008117 6.6e-24 114.4 95 62.1
CAN.G31.4 Capsicum annuum HOM05D006528 ORTHO05D008117 6.6e-24 114.4 79 69.6
Gohir.A13G050500 Gossypium hirsutum HOM05D006528 ORTHO05D008117 6.6e-24 114.4 78 70.5
Gohir.D13G049300 Gossypium hirsutum HOM05D006528 ORTHO05D008117 6.6e-24 114.4 78 70.5
CiPaw.05G028900 Carya illinoinensis HOM05D006528 ORTHO05D008117 8.6e-24 114.0 96 59.4
Medtr2g009660 Medicago truncatula HOM05D006528 ORTHO05D008117 8.6e-24 114.0 79 68.4
Peaxi162Scf00152g00928 Petunia axillaris HOM05D006528 ORTHO05D008117 8.6e-24 114.0 78 69.2
Sabra07G0094700 Salix brachista HOM05D006528 ORTHO05D008117 8.6e-24 114.0 78 69.2
Aa31sc21G60 Aethionema arabicum HOM05D006528 ORTHO05D008117 1.1e-23 113.6 78 71.8
Lj4g0001130 Lotus japonicus HOM05D006528 ORTHO05D008117 1.1e-23 113.6 78 70.5
Os03g0690000 Oryza sativa ssp. japonica HOM05D006528 ORTHO05D008117 1.1e-23 113.6 79 68.4
GSVIVG01012516001 Vitis vinifera HOM05D006528 ORTHO05D008117 1.1e-23 113.6 78 70.5
DCAR_003600 Daucus carota HOM05D006528 ORTHO05D008117 1.5e-23 113.2 78 69.2
ECA234G2655 Erigeron canadensis HOM05D006528 ORTHO05D008117 1.5e-23 113.2 78 70.5
FvH4_2g11550 Fragaria vesca HOM05D006528 ORTHO05D008117 1.5e-23 113.2 78 69.2
FAN15G1663 Fragaria x ananassa HOM05D006528 ORTHO05D008117 1.5e-23 113.2 78 69.2
FAN20G2769 Fragaria x ananassa HOM05D006528 ORTHO05D008117 1.5e-23 113.2 78 69.2
FAN24G2600 Fragaria x ananassa HOM05D006528 ORTHO05D008117 1.5e-23 113.2 78 69.2
FAN27G2089 Fragaria x ananassa HOM05D006528 ORTHO05D008117 1.5e-23 113.2 78 69.2
Hma1.2p1_1093F.1_g256310 Hydrangea macrophylla HOM05D006528 ORTHO05D008117 1.5e-23 113.2 80 68.8
Lalb_Chr16g0382981 Lupinus albus HOM05D006528 ORTHO05D008117 1.5e-23 113.2 78 70.5
Prupe.8G071000 Prunus persica HOM05D006528 ORTHO05D008117 1.5e-23 113.2 95 63.2
ClCG10G009640 Citrullus lanatus HOM05D006528 ORTHO05D008117 1.9e-23 112.8 78 70.5
Cc02_g20840 Coffea canephora HOM05D006528 ORTHO05D008117 1.9e-23 112.8 86 65.1
Lj9A347T51 Lonicera japonica HOM05D006528 ORTHO05D008117 1.9e-23 112.8 78 69.2
MCO12G136 Micromonas commoda HOM05D006528 ORTHO05D008117 1.9e-23 112.8 82 64.6
Nitab4.5_0000001g0270 Nicotiana tabacum HOM05D006528 ORTHO05D008117 1.9e-23 112.8 79 69.6
Nitab4.5_0001093g0020 Nicotiana tabacum HOM05D006528 ORTHO05D008117 1.9e-23 112.8 79 68.4
Oeu027056.1 Olea europaea HOM05D006528 ORTHO05D008117 1.9e-23 112.8 86 64.0
Phvul.002G213700 Phaseolus vulgaris HOM05D006528 ORTHO05D008117 1.9e-23 112.8 78 69.2
Psat1g213920 Pisum sativum HOM05D006528 ORTHO05D008117 1.9e-23 112.8 78 67.9
TWI14G0454 Tripterygium wilfordii HOM05D006528 ORTHO05D008117 1.9e-23 112.8 92 60.9
MELO3C018053.2 Cucumis melo HOM05D006528 ORTHO05D008117 2.5e-23 112.5 78 70.5
Glyma.07G182600 Glycine max HOM05D006528 ORTHO05D008117 2.5e-23 112.5 88 63.6
Glyma.08G067300 Glycine max HOM05D006528 ORTHO05D008117 2.5e-23 112.5 88 63.6
Lsat_1_v5_gn_7_82720 Lactuca sativa HOM05D006528 ORTHO05D008117 2.5e-23 112.5 78 67.9
Atru.chr6.1284 Acer truncatum HOM05D006528 ORTHO05D008117 3.3e-23 112.1 78 70.5
Actinidia02398 Actinidia chinensis HOM05D006528 ORTHO05D008117 3.3e-23 112.1 78 69.2
Sed0017031 Sechium edule HOM05D006528 ORTHO05D008117 3.3e-23 112.1 78 69.2
Sopen11g019700 Solanum pennellii HOM05D006528 ORTHO05D008117 3.3e-23 112.1 78 69.2
PGSC0003DMG400025320 Solanum tuberosum HOM05D006528 ORTHO05D008117 3.3e-23 112.1 78 69.2
PGSC0003DMG400039300 Solanum tuberosum HOM05D006528 ORTHO05D008117 3.3e-23 112.1 78 69.2
AT4G33640 Arabidopsis thaliana HOM05D006528 ORTHO05D008117 4.3e-23 111.7 78 70.5
Aqoxy6G00830 Aquilegia oxysepala HOM05D006528 ORTHO05D008117 5.6e-23 111.3 78 66.7
arahy.Tifrunner.gnm1.ann1.UT9VTR Arachis hypogaea HOM05D006528 ORTHO05D008117 5.6e-23 111.3 78 67.9
Ca_18387_v3 Cicer arietinum L. HOM05D006528 ORTHO05D008117 5.6e-23 111.3 78 67.9
COL.COLO4_32404 Corchorus olitorius HOM05D006528 ORTHO05D008117 5.6e-23 111.3 78 70.5
Dinv16007 Davidia involucrata HOM05D006528 ORTHO05D008117 5.6e-23 111.3 78 69.2
HanXRQChr10g0297761 Helianthus annuus HOM05D006528 ORTHO05D008117 7.3e-23 110.9 78 67.9
Nn1g05616 Nelumbo nucifera HOM05D006528 ORTHO05D008117 7.3e-23 110.9 78 67.9
RcHm_v2.0_Chr6g0270691 Rosa chinensis HOM05D006528 ORTHO05D008117 7.3e-23 110.9 78 67.9
unitig_0.g617 Utricularia gibba HOM05D006528 ORTHO05D008117 7.3e-23 110.9 78 69.2
Ah.01g007370 Amaranthus hybridus HOM05D006528 ORTHO05D008117 9.5e-23 110.5 78 69.2
CANSAT21G1972 Cannabis sativa HOM05D006528 ORTHO05D008117 9.5e-23 110.5 95 56.8
Haze_10502 Corylus avellana HOM05D006528 ORTHO05D008117 9.5e-23 110.5 96 62.5
Eucgr.I02615 Eucalyptus grandis HOM05D006528 ORTHO05D008117 9.5e-23 110.5 78 67.9
PSO541G2139 Papaver somniferum HOM05D006528 ORTHO05D008117 9.5e-23 110.5 88 62.5
PSO675G1859 Papaver somniferum HOM05D006528 ORTHO05D008117 9.5e-23 110.5 88 62.5
Sc05g0005550 Simmondsia chinensis HOM05D006528 ORTHO05D008117 9.5e-23 110.5 87 64.4
Carub.0007s0679 Capsella rubella HOM05D006528 ORTHO05D008117 1.2e-22 110.2 78 69.2
CARHR241740 Cardamine hirsuta HOM05D006528 ORTHO05D008117 1.2e-22 110.2 88 64.8
MD05G1048500 Malus domestica HOM05D006528 ORTHO05D008117 1.2e-22 110.2 78 67.9
Duzib248G1107 Durio zibethinus HOM05D006528 ORTHO05D008117 1.6e-22 109.8 78 67.9
Medtr4g093660 Medicago truncatula HOM05D006528 ORTHO05D008117 1.6e-22 109.8 78 66.7
arahy.Tifrunner.gnm1.ann1.QJC347 Arachis hypogaea HOM05D006528 ORTHO05D008117 2.1e-22 109.4 78 67.9
Lalb_Chr09g0326921 Lupinus albus HOM05D006528 ORTHO05D008117 2.1e-22 109.4 78 66.7
MD10G1054900 Malus domestica HOM05D006528 ORTHO05D008117 2.1e-22 109.4 78 66.7
Manes.07G041500 Manihot esculenta HOM05D006528 ORTHO05D008117 2.1e-22 109.4 78 67.9
Rhsim11G0141900 Rhododendron simsii HOM05D006528 ORTHO05D008117 2.1e-22 109.4 78 67.9
TAR628G0148 Trochodendron aralioides HOM05D006528 ORTHO05D008117 2.1e-22 109.4 78 67.9
Hund06469 Selenicereus undatus HOM05D006528 ORTHO05D008117 2.8e-22 109.0 78 69.2
THA.LOC104819510 Tarenaya hassleriana HOM05D006528 ORTHO05D008117 2.8e-22 109.0 78 67.9
AL7G17860 Arabidopsis lyrata HOM05D006528 ORTHO05D008117 3.6e-22 108.6 78 69.2
AUR62027098 Chenopodium quinoa HOM05D006528 ORTHO05D008117 3.6e-22 108.6 94 58.5
Ciclev10029672m.g Citrus clementina HOM05D006528 ORTHO05D008117 3.6e-22 108.6 78 67.9
EL10Ac9g22060 Beta vulgaris HOM05D006528 ORTHO05D008117 4.7e-22 108.2 78 66.7
Thhalv10026671m.g Eutrema salsugineum HOM05D006528 ORTHO05D008117 4.7e-22 108.2 78 69.2
Sp7g31370 Schrenkiella parvula HOM05D006528 ORTHO05D008117 4.7e-22 108.2 78 69.2
BcaC09g52175 Brassica carinata HOM05D006528 ORTHO05D008117 6.1e-22 107.8 78 69.2
C01p05070 Brassica napus HOM05D006528 ORTHO05D008117 6.1e-22 107.8 78 69.2
BolC1t00489H Brassica oleracea HOM05D006528 ORTHO05D008117 6.1e-22 107.8 78 69.2
Cfa004847 Carpinus fangiana HOM05D006528 ORTHO05D008117 6.1e-22 107.8 90 61.1
AUR62030940 Chenopodium quinoa HOM05D006528 ORTHO05D008117 6.1e-22 107.8 80 67.5
vmacro01866 Vaccinium macrocarpon HOM05D006528 ORTHO05D008117 6.1e-22 107.8 78 66.7
A01p04680 Brassica napus HOM05D006528 ORTHO05D008117 8.0e-22 107.5 78 69.2
BraA01t00451Z Brassica rapa HOM05D006528 ORTHO05D008117 8.0e-22 107.5 78 69.2
Dinv24144 Davidia involucrata HOM05D006528 ORTHO05D008117 1.0e-21 107.1 78 66.7
Psat7g101760 Pisum sativum HOM05D006528 ORTHO05D008117 1.0e-21 107.1 78 66.7
CDE07G0501 Ceratophyllum demersum HOM05D006528 ORTHO05D008117 1.4e-21 106.7 80 67.5
Ah.01g023880 Amaranthus hybridus HOM05D006528 ORTHO05D008117 1.8e-21 106.3 78 66.7
Sed0022924 Sechium edule HOM05D006528 ORTHO05D008117 4.0e-21 105.1 89 61.8
VMungo0251G1582 Vigna mungo HOM05D006528 ORTHO05D008117 2.6e-20 102.4 92 56.5
MBI16_g06019_MAGBIO Magnolia biondii HOM05D006528 ORTHO05D008117 4.4e-20 101.7 98 56.1
QL11p025380 Quercus lobata HOM05D006528 ORTHO05D008117 6.4e-19 97.8 106 50.9
ECA236G0856 Erigeron canadensis HOM05D006528 ORTHO05D008117 8.3e-19 97.4 68 67.6
PRCOL_00002361 Prasinoderma coloniale HOM05D006528 ORTHO05D008117 3.5e-17 92.0 91 54.9
Potri.017G042432 Populus trichocarpa HOM05D006528 ORTHO05D008117 5.9e-17 91.3 78 59.0
SalBow6G1122 Salvia bowleyana HOM05D006528 ORTHO05D008117 1.0e-16 90.5 129 44.2
SalBow6G4989 Salvia bowleyana HOM05D006528 ORTHO05D008117 1.0e-16 90.5 129 44.2
Solyc11g044230.3 Solanum lycopersicum HOM05D006528 ORTHO05D008117 1.7e-16 89.7 62 71.0
CsaV3_4G014760 Cucumis sativus L. HOM05D006528 ORTHO05D008117 4.3e-15 85.1 51 76.5
Hma1.2p1_0160F.1_g070933 Hydrangea macrophylla HOM05D006528 ORTHO05D008117 8.9e-13 77.4 49 71.4
Hma1.2p1_1174F.1_g263935 Hydrangea macrophylla HOM05D006528 ORTHO05D008117 8.9e-13 77.4 49 71.4
Hma1.2p1_1518F.1_g288560 Hydrangea macrophylla HOM05D006528 ORTHO05D008117 8.9e-13 77.4 49 71.4
Actinidia00310 Actinidia chinensis HOM05D006528 ORTHO05D008117 2.5e-07 59.3 49 61.2


User provided reference genes

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