Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c17_20320 Physcomitrium patens HOM05D004802 ORTHO05D005591 3.0e-64 248.4 131 100.0
GSVIVG01007807001 Vitis vinifera HOM05D004802 ORTHO05D005591 6.4e-35 151.0 131 56.5
Eucgr.B00348 Eucalyptus grandis HOM05D004802 ORTHO05D005591 1.1e-34 150.2 145 55.9
VMungo1309G2385 Vigna mungo HOM05D004802 ORTHO05D005591 2.4e-34 149.1 141 55.3
Glyma.04G171700 Glycine max HOM05D004802 ORTHO05D005591 5.4e-34 147.9 129 57.4
Lsat_1_v5_gn_5_17000 Lactuca sativa HOM05D004802 ORTHO05D005591 5.4e-34 147.9 123 59.3
HanXRQChr05g0155531 Helianthus annuus HOM05D004802 ORTHO05D005591 7.1e-34 147.5 121 60.3
THA.LOC104818227 Tarenaya hassleriana HOM05D004802 ORTHO05D005591 7.1e-34 147.5 121 62.0
arahy.Tifrunner.gnm1.ann1.J5PS4T Arachis hypogaea HOM05D004802 ORTHO05D005591 9.3e-34 147.1 113 62.8
HPP92_014441 Vanilla planifolia HOM05D004802 ORTHO05D005591 9.3e-34 147.1 120 59.2
Manes.12G158200 Manihot esculenta HOM05D004802 ORTHO05D005591 1.2e-33 146.7 120 60.8
arahy.Tifrunner.gnm1.ann1.H02ACK Arachis hypogaea HOM05D004802 ORTHO05D005591 1.6e-33 146.4 120 60.0
Mapoly0009s0030 Marchantia polymorpha HOM05D004802 ORTHO05D005591 1.6e-33 146.4 127 63.8
THA.LOC104821462 Tarenaya hassleriana HOM05D004802 ORTHO05D005591 1.6e-33 146.4 145 52.4
Thecc.03G006700 Theobroma cacao HOM05D004802 ORTHO05D005591 1.6e-33 146.4 139 56.1
Glyma.06G192200 Glycine max HOM05D004802 ORTHO05D005591 2.1e-33 146.0 141 55.3
CDE01G0824 Ceratophyllum demersum HOM05D004802 ORTHO05D005591 2.7e-33 145.6 108 64.8
ECA232G0284 Erigeron canadensis HOM05D004802 ORTHO05D005591 2.7e-33 145.6 134 55.2
DCAR_016496 Daucus carota HOM05D004802 ORTHO05D005591 3.5e-33 145.2 123 57.7
DCAR_021562 Daucus carota HOM05D004802 ORTHO05D005591 3.5e-33 145.2 120 57.5
Cpa.g.sc110.33 Carica papaya HOM05D004802 ORTHO05D005591 4.6e-33 144.8 142 53.5
Phvul.009G188900 Phaseolus vulgaris HOM05D004802 ORTHO05D005591 6.0e-33 144.4 141 54.6
unitig_27.g24928 Utricularia gibba HOM05D004802 ORTHO05D005591 6.0e-33 144.4 120 59.2
Actinidia34948 Actinidia chinensis HOM05D004802 ORTHO05D005591 7.9e-33 144.1 123 59.3
Cfa019082 Carpinus fangiana HOM05D004802 ORTHO05D005591 1.0e-32 143.7 120 58.3
Hma1.2p1_0483F.1_g162710 Hydrangea macrophylla HOM05D004802 ORTHO05D005591 1.0e-32 143.7 138 54.3
Actinidia19087 Actinidia chinensis HOM05D004802 ORTHO05D005591 1.7e-32 142.9 123 58.5
PGR083G1798 Punica granatum HOM05D004802 ORTHO05D005591 1.7e-32 142.9 123 60.2
ATR0796G060 Amborella trichopoda HOM05D004802 ORTHO05D005591 2.3e-32 142.5 139 53.2
CsaV3_1G001710 Cucumis sativus L. HOM05D004802 ORTHO05D005591 3.0e-32 142.1 123 58.5
RcHm_v2.0_Chr7g0179521 Rosa chinensis HOM05D004802 ORTHO05D005591 3.0e-32 142.1 140 53.6
MBI18_g21823_MAGBIO Magnolia biondii HOM05D004802 ORTHO05D005591 3.9e-32 141.7 142 52.8
Prupe.5G177600 Prunus persica HOM05D004802 ORTHO05D005591 3.9e-32 141.7 140 53.6
QL03p066954 Quercus lobata HOM05D004802 ORTHO05D005591 3.9e-32 141.7 119 58.8
Sc12g0005500 Simmondsia chinensis HOM05D004802 ORTHO05D005591 3.9e-32 141.7 142 55.6
TPR.G6374 Trifolium pratense HOM05D004802 ORTHO05D005591 3.9e-32 141.7 137 54.7
Psat2g170440 Pisum sativum HOM05D004802 ORTHO05D005591 5.1e-32 141.4 120 60.0
TPR.G20968 Trifolium pratense HOM05D004802 ORTHO05D005591 5.1e-32 141.4 137 54.7
Migut.D01783 Erythranthe guttata HOM05D004802 ORTHO05D005591 6.6e-32 141.0 121 58.7
Hma1.2p1_2640F.1_g325880 Hydrangea macrophylla HOM05D004802 ORTHO05D005591 6.6e-32 141.0 111 63.1
LjContig00081g0027263 Lotus japonicus HOM05D004802 ORTHO05D005591 6.6e-32 141.0 118 58.5
Gohir.A12G276300 Gossypium hirsutum HOM05D004802 ORTHO05D005591 8.7e-32 140.6 108 63.9
Gorai.008G297400 Gossypium raimondii HOM05D004802 ORTHO05D005591 8.7e-32 140.6 108 63.9
SGA_v2.0_scaffold114G31844 Striga asiatica HOM05D004802 ORTHO05D005591 8.7e-32 140.6 108 62.0
Lalb_Chr23g0265291 Lupinus albus HOM05D004802 ORTHO05D005591 1.1e-31 140.2 120 55.8
Potri.002G185800 Populus trichocarpa HOM05D004802 ORTHO05D005591 1.1e-31 140.2 108 63.0
Medtr5g015850 Medicago truncatula HOM05D004802 ORTHO05D005591 1.5e-31 139.8 138 55.1
PSO782G1633 Papaver somniferum HOM05D004802 ORTHO05D005591 1.5e-31 139.8 120 57.5
SEGI_23384 Sequoiadendron giganteum HOM05D004802 ORTHO05D005591 1.5e-31 139.8 138 55.8
TAR362G1012 Trochodendron aralioides HOM05D004802 ORTHO05D005591 1.5e-31 139.8 120 55.0
CANSAT80G2080 Cannabis sativa HOM05D004802 ORTHO05D005591 1.9e-31 139.4 108 61.1
MBI19_g12136_MAGBIO Magnolia biondii HOM05D004802 ORTHO05D005591 1.9e-31 139.4 108 62.0
PSO170G0191 Papaver somniferum HOM05D004802 ORTHO05D005591 1.9e-31 139.4 120 57.5
Rhsim12G0162600 Rhododendron simsii HOM05D004802 ORTHO05D005591 1.9e-31 139.4 108 61.1
MSTRG.23103 Avicennia marina HOM05D004802 ORTHO05D005591 2.5e-31 139.0 120 57.5
Sed0010100 Sechium edule HOM05D004802 ORTHO05D005591 2.5e-31 139.0 120 56.7
vmacro16596 Vaccinium macrocarpon HOM05D004802 ORTHO05D005591 2.5e-31 139.0 142 52.1
Aa31LG3G15940 Aethionema arabicum HOM05D004802 ORTHO05D005591 3.3e-31 138.7 115 56.5
Duzib068G0850 Durio zibethinus HOM05D004802 ORTHO05D005591 3.3e-31 138.7 108 63.0
Gohir.D12G276900 Gossypium hirsutum HOM05D004802 ORTHO05D005591 3.3e-31 138.7 108 63.0
Potri.014G111100 Populus trichocarpa HOM05D004802 ORTHO05D005591 3.3e-31 138.7 120 58.3
MD06G1178500 Malus domestica HOM05D004802 ORTHO05D005591 4.3e-31 138.3 108 60.2
CSS0033619 Camellia sinensis var. sinensis HOM05D004802 ORTHO05D005591 5.6e-31 137.9 108 60.2
Ah.08g213760 Amaranthus hybridus HOM05D004802 ORTHO05D005591 7.4e-31 137.5 118 57.6
AL1G18110 Arabidopsis lyrata HOM05D004802 ORTHO05D005591 7.4e-31 137.5 120 53.3
Hund18328 Selenicereus undatus HOM05D004802 ORTHO05D005591 7.4e-31 137.5 116 56.9
Solyc03g114050.3 Solanum lycopersicum HOM05D004802 ORTHO05D005591 7.4e-31 137.5 120 56.7
Sopen03g033100 Solanum pennellii HOM05D004802 ORTHO05D005591 7.4e-31 137.5 120 56.7
Cpa.g.sc170.28 Carica papaya HOM05D004802 ORTHO05D005591 9.6e-31 137.1 130 53.8
MD14G1184900 Malus domestica HOM05D004802 ORTHO05D005591 9.6e-31 137.1 139 51.1
PGSC0003DMG400024483 Solanum tuberosum HOM05D004802 ORTHO05D005591 9.6e-31 137.1 113 59.3
TWI32G0003 Tripterygium wilfordii HOM05D004802 ORTHO05D005591 9.6e-31 137.1 120 58.3
BolC5t29353H Brassica oleracea HOM05D000129 ORTHO05D005591 1.3e-30 136.7 120 54.2
BraA06t23701Z Brassica rapa HOM05D004802 ORTHO05D005591 1.3e-30 136.7 120 54.2
AUR62025410 Chenopodium quinoa HOM05D004802 ORTHO05D005591 1.3e-30 136.7 142 50.0
COL.COLO4_24762 Corchorus olitorius HOM05D004802 ORTHO05D005591 1.3e-30 136.7 142 52.1
Peaxi162Scf00017g02344 Petunia axillaris HOM05D004802 ORTHO05D005591 1.3e-30 136.7 113 59.3
Manes.15G185900 Manihot esculenta HOM05D004802 ORTHO05D005591 1.6e-30 136.3 120 58.3
Nitab4.5_0000499g0020 Nicotiana tabacum HOM05D004802 ORTHO05D005591 1.6e-30 136.3 118 55.9
Nitab4.5_0001422g0100 Nicotiana tabacum HOM05D004802 ORTHO05D005591 1.6e-30 136.3 113 58.4
Sp1g06517 Schrenkiella parvula HOM05D004802 ORTHO05D005591 1.6e-30 136.3 120 54.2
Carub.0005s0629 Capsella rubella HOM05D004802 ORTHO05D005591 2.1e-30 136.0 118 53.4
AUR62008830 Chenopodium quinoa HOM05D004802 ORTHO05D005591 2.1e-30 136.0 129 51.9
Oeu026523.1 Olea europaea HOM05D004802 ORTHO05D005591 2.8e-30 135.6 108 60.2
BcaB02g06722 Brassica carinata HOM05D004802 ORTHO05D005591 3.6e-30 135.2 118 54.2
BcaC07g41973 Brassica carinata HOM05D004802 ORTHO05D005591 3.6e-30 135.2 120 53.3
A09p66160 Brassica napus HOM05D004802 ORTHO05D005591 3.6e-30 135.2 142 49.3
C08p50320 Brassica napus HOM05D004802 ORTHO05D005591 3.6e-30 135.2 120 53.3
BolC8t52561H Brassica oleracea HOM05D004802 ORTHO05D005591 3.6e-30 135.2 120 53.3
BraA09t41954Z Brassica rapa HOM05D004802 ORTHO05D005591 3.6e-30 135.2 142 49.3
Thhalv10009035m.g Eutrema salsugineum HOM05D004802 ORTHO05D005591 3.6e-30 135.2 115 54.8
Sc16g0001640 Simmondsia chinensis HOM05D004802 ORTHO05D005591 3.6e-30 135.2 108 59.3
TWI75G1644 Tripterygium wilfordii HOM05D004802 ORTHO05D005591 3.6e-30 135.2 120 57.5
CARHR007640 Cardamine hirsuta HOM05D004802 ORTHO05D005591 4.8e-30 134.8 120 52.5
HanXRQChr05g0163301 Helianthus annuus HOM05D004802 ORTHO05D005591 4.8e-30 134.8 122 57.4
HanXRQChr05g0163571 Helianthus annuus HOM05D004802 ORTHO05D005591 4.8e-30 134.8 122 57.4
Aqoxy5G00387 Aquilegia oxysepala HOM05D004802 ORTHO05D005591 6.2e-30 134.4 120 56.7
Ca_06425_v3 Cicer arietinum L. HOM05D000308 ORTHO05D000194 6.2e-30 134.4 108 59.3
SalBow2G1273 Salvia bowleyana HOM05D004802 ORTHO05D005591 6.2e-30 134.4 122 54.9
Aqoxy3G01788 Aquilegia oxysepala HOM05D004802 ORTHO05D005591 8.1e-30 134.0 108 60.2
Dinv41117 Davidia involucrata HOM05D001600 ORTHO05D001502 8.1e-30 134.0 125 58.4
BcaC07g42500 Brassica carinata HOM05D004802 ORTHO05D005591 1.1e-29 133.7 145 48.3
AT1G07830 Arabidopsis thaliana HOM05D004802 ORTHO05D005591 1.4e-29 133.3 119 55.5
EL10Ac7g17734 Beta vulgaris HOM05D004802 ORTHO05D005591 1.4e-29 133.3 120 55.0
Cc00_g03600 Coffea canephora HOM05D004802 ORTHO05D005591 1.4e-29 133.3 108 59.3
Thhalv10014955m.g Eutrema salsugineum HOM05D004802 ORTHO05D005591 1.4e-29 133.3 117 53.0
Ciclev10022742m.g Citrus clementina HOM05D004802 ORTHO05D005591 1.8e-29 132.9 143 51.0
Atru.chr9.2421 Acer truncatum HOM05D004802 ORTHO05D005591 2.4e-29 132.5 119 57.1
C05p05910 Brassica napus HOM05D005594 ORTHO05D006403 2.4e-29 132.5 115 54.8
arahy.Tifrunner.gnm1.ann1.RYE93B Arachis hypogaea HOM05D004802 ORTHO05D005591 5.3e-29 131.3 137 51.1
FvH4_5g16620 Fragaria vesca HOM05D004802 ORTHO05D005591 5.3e-29 131.3 140 52.1
Aqoxy3G02494 Aquilegia oxysepala HOM05D004802 ORTHO05D005591 6.9e-29 131.0 141 51.1
Dinv25814 Davidia involucrata HOM05D004802 ORTHO05D005591 9.0e-29 130.6 96 62.5
FAN18G4009 Fragaria x ananassa HOM05D004802 ORTHO05D005591 1.5e-28 129.8 140 51.4
Os06g0128500 Oryza sativa ssp. japonica HOM05D004802 ORTHO05D005591 1.5e-28 129.8 115 57.4
FAN13G0264 Fragaria x ananassa HOM05D004802 ORTHO05D005591 2.0e-28 129.4 139 51.8
FAN08G2523 Fragaria x ananassa HOM05D004802 ORTHO05D005591 2.6e-28 129.0 137 51.8
Zm00001eb378540 Zea mays HOM05D004802 ORTHO05D005591 5.8e-28 127.9 121 54.5
CBR_g30055 Chara braunii HOM05D004802 ORTHO05D005591 9.9e-28 127.1 128 55.5
ClCG06G016810 Citrullus lanatus HOM05D004802 ORTHO05D005591 4.9e-27 124.8 89 67.4
ECA246G1319 Erigeron canadensis HOM05D004802 ORTHO05D005591 3.2e-26 122.1 141 46.1
FAN04G1836 Fragaria x ananassa HOM05D004802 ORTHO05D005591 3.2e-26 122.1 108 57.4
Peaxi162Scf00689g00332 Petunia axillaris HOM05D004802 ORTHO05D005591 4.2e-26 121.7 120 51.7
QL10p013461 Quercus lobata HOM05D004802 ORTHO05D005591 4.2e-26 121.7 88 65.9
QL03p067058 Quercus lobata HOM05D004802 ORTHO05D005591 7.1e-26 120.9 88 64.8
MELO3C017111.2 Cucumis melo HOM05D004802 ORTHO05D005591 7.9e-25 117.5 88 64.8
RcHm_v2.0_Chr3g0484411 Rosa chinensis HOM05D004802 ORTHO05D005591 7.9e-25 117.5 90 62.2
Rhsim08G0169000 Rhododendron simsii HOM05D004802 ORTHO05D005591 1.0e-24 117.1 171 41.5
Nitab4.5_0008768g0020 Nicotiana tabacum HOM05D004802 ORTHO05D005591 1.6e-22 109.8 169 39.1
CiPaw.11G030400 Carya illinoinensis HOM05D004802 ORTHO05D005591 1.2e-20 103.6 84 58.3
Cc00_g07690 Coffea canephora HOM05D004802 ORTHO05D005591 3.4e-20 102.1 89 55.1
Haze_07452 Corylus avellana HOM05D004802 ORTHO05D005591 7.6e-20 100.9 86 54.7
Pp3c14_16960 Physcomitrium patens HOM05D004802 ORTHO05D005591 6.5e-19 97.8 63 81.0
SMO228G0088 Selaginella moellendorffii HOM05D004802 ORTHO05D005591 2.5e-18 95.9 86 54.7
AagrBONN_evm.TU.Sc2ySwM_368.3252 Anthoceros agrestis HOM05D004802 ORTHO05D005591 1.2e-17 93.6 84 54.8
Cc00_g30360 Coffea canephora HOM05D004802 ORTHO05D005591 1.6e-14 83.2 73 53.4
Nn2g12605 Nelumbo nucifera HOM05D004802 ORTHO05D005591 2.1e-14 82.8 62 59.7
MCO15G004 Micromonas commoda HOM05D004802 ORTHO05D005591 1.8e-13 79.7 120 40.0
RcHm_v2.0_Chr3g0484341 Rosa chinensis HOM05D004802 ORTHO05D005591 1.5e-12 76.6 63 60.3
Hma1.2p1_0107F.1_g051480 Hydrangea macrophylla HOM05D004802 ORTHO05D005591 4.5e-12 75.1 60 60.0
Haze_26898 Corylus avellana HOM05D004802 ORTHO05D005591 6.5e-11 71.2 97 38.1
SHI01132 Sapria himalayana HOM05D004802 ORTHO05D005591 6.5e-11 71.2 89 43.8
Nitab4.5_0000003g0430 Nicotiana tabacum HOM05D004802 ORTHO05D005591 1.1e-10 70.5 69 55.1
Cfa024847 Carpinus fangiana HOM05D004802 ORTHO05D005591 1.9e-07 59.7 78 43.6


User provided reference genes

Program Settings