Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c17_20170 Physcomitrium patens HOM05D004543 ORTHO05D006042 0.0e+00 1481.8 762 100.0
Pp3c14_17740 Physcomitrium patens HOM05D004543 ORTHO05D006042 0.0e+00 1218.0 756 82.9
Mapoly0003s0046 Marchantia polymorpha HOM05D004543 ORTHO05D006042 3.4e-253 878.6 742 63.3
SEGI_19802 Sequoiadendron giganteum HOM05D004543 ORTHO05D006042 3.9e-233 812.0 747 58.0
AagrBONN_evm.TU.Sc2ySwM_344.2190 Anthoceros agrestis HOM05D004543 ORTHO05D006042 2.6e-229 799.3 750 57.9
Ciclev10018979m.g Citrus clementina HOM05D004543 ORTHO05D006042 1.3e-215 753.8 761 53.4
Nn3g16500 Nelumbo nucifera HOM05D004543 ORTHO05D006042 4.1e-214 748.8 765 52.3
COL.COLO4_26675 Corchorus olitorius HOM05D004543 ORTHO05D006042 3.4e-213 745.7 745 53.8
Hund02429 Selenicereus undatus HOM05D004543 ORTHO05D006042 5.9e-213 745.0 749 53.7
Dinv11159 Davidia involucrata HOM05D004543 ORTHO05D006042 1.3e-212 743.8 757 53.4
unitig_8.g3033 Utricularia gibba HOM05D004543 ORTHO05D006042 2.9e-212 742.7 741 53.3
Migut.I00508 Erythranthe guttata HOM05D004543 ORTHO05D006042 5.0e-212 741.9 740 53.6
Actinidia25587 Actinidia chinensis HOM05D004543 ORTHO05D006042 2.5e-211 739.6 743 52.8
GSVIVG01008523001 Vitis vinifera HOM05D004543 ORTHO05D006042 5.5e-211 738.4 746 53.8
Thecc.06G039500 Theobroma cacao HOM05D004543 ORTHO05D006042 7.2e-211 738.0 744 52.8
CSS0037462 Camellia sinensis var. sinensis HOM05D004543 ORTHO05D006042 1.8e-209 733.4 756 52.6
CiPaw.11G008900 Carya illinoinensis HOM05D004543 ORTHO05D006042 1.8e-209 733.4 760 52.4
Cfa018837 Carpinus fangiana HOM05D004543 ORTHO05D006042 3.9e-209 732.3 742 53.4
Haze_07231 Corylus avellana HOM05D004543 ORTHO05D006042 6.7e-209 731.5 742 53.6
MD06G1143400 Malus domestica HOM05D004543 ORTHO05D006042 8.7e-209 731.1 744 53.4
Aqoxy5G03415 Aquilegia oxysepala HOM05D004543 ORTHO05D006042 3.3e-208 729.2 744 53.1
PGR083G0162 Punica granatum HOM05D004543 ORTHO05D006042 3.3e-208 729.2 753 52.5
Gohir.D11G175000 Gossypium hirsutum HOM05D004543 ORTHO05D006042 4.3e-208 728.8 753 52.6
Gorai.007G187600 Gossypium raimondii HOM05D004543 ORTHO05D006042 9.7e-208 727.6 753 52.5
Duzib138G1537 Durio zibethinus HOM05D004543 ORTHO05D006042 2.2e-207 726.5 754 52.9
Atru.chr9.1076 Acer truncatum HOM05D004543 ORTHO05D006042 2.8e-207 726.1 743 53.2
Manes.06G118300 Manihot esculenta HOM05D004543 ORTHO05D006042 2.8e-207 726.1 761 52.7
Actinidia15838 Actinidia chinensis HOM05D004543 ORTHO05D006042 6.3e-207 724.9 765 51.8
Gohir.A11G168800 Gossypium hirsutum HOM05D004543 ORTHO05D006042 1.4e-206 723.8 754 52.7
vmacro19212 Vaccinium macrocarpon HOM05D004543 ORTHO05D006042 4.1e-206 722.2 756 51.6
Cc07_g18860 Coffea canephora HOM05D004543 ORTHO05D006042 5.3e-206 721.8 746 51.5
Eucgr.B00121 Eucalyptus grandis HOM05D004543 ORTHO05D006042 5.3e-206 721.8 740 52.8
Lj9C477T19 Lonicera japonica HOM05D004543 ORTHO05D006042 3.4e-205 719.2 763 51.6
PSO782G5417 Papaver somniferum HOM05D004543 ORTHO05D006042 3.4e-205 719.2 727 51.6
EL10As4g23416 Beta vulgaris HOM05D004543 ORTHO05D006042 7.7e-205 718.0 752 51.5
ATR0561G088 Amborella trichopoda HOM05D004543 ORTHO05D006042 5.0e-204 715.3 731 53.1
PSO063G5574 Papaver somniferum HOM05D004543 ORTHO05D006042 5.0e-204 715.3 727 51.6
Potri.015G094000 Populus trichocarpa HOM05D004543 ORTHO05D006042 1.1e-203 714.1 751 52.3
Sabra15G0115500 Salix brachista HOM05D004543 ORTHO05D006042 2.5e-203 713.0 758 51.8
HanXRQChr09g0273071 Helianthus annuus HOM05D004543 ORTHO05D006042 3.2e-203 712.6 763 51.8
TWI23G0493 Tripterygium wilfordii HOM05D004543 ORTHO05D006042 3.2e-203 712.6 760 51.7
Lsat_1_v5_gn_4_76761 Lactuca sativa HOM05D004543 ORTHO05D006042 5.5e-203 711.8 747 52.3
FAN13G0766 Fragaria x ananassa HOM05D004543 ORTHO05D006042 9.4e-203 711.1 740 52.0
Phvul.003G210200 Phaseolus vulgaris HOM05D004543 ORTHO05D006042 1.6e-202 710.3 752 51.1
SMO347G0349 Selaginella moellendorffii HOM05D004543 ORTHO05D006042 1.6e-202 710.3 742 52.4
Glyma.17G129100 Glycine max HOM05D004543 ORTHO05D006042 2.1e-202 709.9 752 51.3
CANSAT80G2145 Cannabis sativa HOM05D004543 ORTHO05D006042 2.7e-202 709.5 742 51.1
MD14G1158600 Malus domestica HOM05D004543 ORTHO05D006042 2.7e-202 709.5 744 52.2
ClCG11G005570 Citrullus lanatus HOM05D004543 ORTHO05D006042 1.4e-201 707.2 748 51.5
Ca_00911_v3 Cicer arietinum L. HOM05D004543 ORTHO05D006042 2.3e-201 706.4 747 51.1
CsaV3_6G002430 Cucumis sativus L. HOM05D004543 ORTHO05D006042 2.3e-201 706.4 746 51.1
arahy.Tifrunner.gnm1.ann1.28ZGNX Arachis hypogaea HOM05D004543 ORTHO05D006042 5.1e-201 705.3 753 50.5
arahy.Tifrunner.gnm1.ann1.9QW7J0 Arachis hypogaea HOM05D004543 ORTHO05D006042 5.1e-201 705.3 752 50.1
AUR62029871 Chenopodium quinoa HOM05D004543 ORTHO05D006042 5.1e-201 705.3 765 50.7
RcHm_v2.0_Chr7g0190411 Rosa chinensis HOM05D004543 ORTHO05D006042 3.3e-200 702.6 755 50.9
THA.LOC104811593 Tarenaya hassleriana HOM05D004543 ORTHO05D006042 3.3e-200 702.6 759 50.5
VMungo1215G3183 Vigna mungo HOM05D004543 ORTHO05D006042 3.3e-200 702.6 740 51.1
Glyma.05G047300 Glycine max HOM05D004543 ORTHO05D006042 4.4e-200 702.2 746 51.1
Lalb_Chr07g0183361 Lupinus albus HOM05D004543 ORTHO05D006042 4.4e-200 702.2 743 51.1
Oeu056011.1 Olea europaea HOM05D004543 ORTHO05D006042 1.3e-199 700.7 750 50.5
Prupe.5G152600 Prunus persica HOM05D004543 ORTHO05D006042 2.2e-199 699.9 748 51.2
FvH4_5g08050 Fragaria vesca HOM05D004543 ORTHO05D006042 3.7e-199 699.1 739 51.4
Sed0026192 Sechium edule HOM05D004543 ORTHO05D006042 3.7e-199 699.1 743 51.0
FAN04G2916 Fragaria x ananassa HOM05D004543 ORTHO05D006042 4.8e-199 698.7 734 52.0
FAN18G3295 Fragaria x ananassa HOM05D004543 ORTHO05D006042 4.8e-199 698.7 767 50.5
QL10p004063 Quercus lobata HOM05D004543 ORTHO05D006042 6.3e-199 698.4 771 50.3
Carub.0007s1621 Capsella rubella HOM05D004543 ORTHO05D006042 8.2e-199 698.0 754 51.1
Potri.012G096100 Populus trichocarpa HOM05D004543 ORTHO05D006042 1.4e-198 697.2 749 50.9
AL7G28340 Arabidopsis lyrata HOM05D004543 ORTHO05D006042 2.4e-198 696.4 751 51.0
SGA_v2.0_scaffold161G37784 Striga asiatica HOM05D004543 ORTHO05D006042 3.1e-198 696.0 766 50.1
Lj4g0012876 Lotus japonicus HOM05D004543 ORTHO05D006042 5.3e-198 695.3 747 50.7
Nitab4.5_0001187g0130 Nicotiana tabacum HOM05D004543 ORTHO05D006042 5.3e-198 695.3 755 49.8
AT4G24840 Arabidopsis thaliana HOM05D004543 ORTHO05D006042 4.5e-197 692.2 751 50.6
MELO3C025044.2 Cucumis melo HOM05D004543 ORTHO05D006042 4.5e-197 692.2 746 50.3
Sed0023388 Sechium edule HOM05D004543 ORTHO05D006042 4.5e-197 692.2 728 51.4
Nitab4.5_0002497g0060 Nicotiana tabacum HOM05D004543 ORTHO05D006042 1.3e-196 690.6 755 49.7
Medtr4g103610 Medicago truncatula HOM05D004543 ORTHO05D006042 3.8e-196 689.1 747 50.6
Sopen08g002610 Solanum pennellii HOM05D004543 ORTHO05D006042 5.0e-196 688.7 753 49.9
Migut.I00509 Erythranthe guttata HOM05D004543 ORTHO05D006042 1.1e-195 687.6 719 52.3
PGSC0003DMG400026304 Solanum tuberosum HOM05D004543 ORTHO05D006042 4.2e-195 685.6 753 49.9
CDE05G1945 Ceratophyllum demersum HOM05D004543 ORTHO05D006042 7.2e-195 684.9 744 50.7
ECA232G1394 Erigeron canadensis HOM05D004543 ORTHO05D006042 1.6e-194 683.7 743 50.6
Hma1.2p1_1271F.1_g271760 Hydrangea macrophylla HOM05D004543 ORTHO05D006042 1.0e-193 681.0 708 51.4
C01p20140 Brassica napus HOM05D004543 ORTHO05D006042 1.5e-192 677.2 758 49.9
BolC1t01943H Brassica oleracea HOM05D004543 ORTHO05D006042 1.5e-192 677.2 758 49.9
Thhalv10024490m.g Eutrema salsugineum HOM05D004543 ORTHO05D006042 5.7e-192 675.2 752 49.9
A01p16150 Brassica napus HOM05D004543 ORTHO05D006042 1.7e-191 673.7 752 49.9
BraA01t01551Z Brassica rapa HOM05D004543 ORTHO05D006042 1.7e-191 673.7 752 49.9
CAN.G906.5 Capsicum annuum HOM05D004543 ORTHO05D006042 2.2e-191 673.3 745 49.8
BcaC06g32853 Brassica carinata HOM05D004543 ORTHO05D006042 2.8e-191 672.9 752 49.3
BolC7t45874H Brassica oleracea HOM05D004543 ORTHO05D006042 2.8e-191 672.9 752 49.3
C07p53840 Brassica napus HOM05D004543 ORTHO05D006042 4.1e-190 669.1 748 49.2
Sp7g22830 Schrenkiella parvula HOM05D004543 ORTHO05D006042 4.1e-190 669.1 752 49.6
A03p55600 Brassica napus HOM05D004543 ORTHO05D006042 7.0e-190 668.3 751 49.0
BraA03t14627Z Brassica rapa HOM05D004543 ORTHO05D006042 7.0e-190 668.3 751 49.0
Peaxi162Scf00045g00192 Petunia axillaris HOM05D004543 ORTHO05D006042 2.6e-189 666.4 750 48.9
TAR622G0482 Trochodendron aralioides HOM05D004543 ORTHO05D006042 4.5e-189 665.6 678 52.7
Aa31LG7G11000 Aethionema arabicum HOM05D004543 ORTHO05D006042 1.7e-188 663.7 780 47.9
Zm00001eb210790 Zea mays HOM05D004543 ORTHO05D006042 1.1e-187 661.0 728 50.3
Os03g0849600 Oryza sativa ssp. japonica HOM05D004543 ORTHO05D006042 2.5e-187 659.8 732 49.3
Cpa.g.sc13.138 Carica papaya HOM05D004543 ORTHO05D006042 1.4e-185 654.1 750 49.2
AL3G15410 Arabidopsis lyrata HOM05D004543 ORTHO05D006042 2.3e-185 653.3 756 48.3
Carub.0003s0428 Capsella rubella HOM05D004543 ORTHO05D006042 1.2e-184 651.0 749 48.2
Sp6g25960 Schrenkiella parvula HOM05D004543 ORTHO05D006042 7.7e-181 638.3 748 46.5
CBR_g49627 Chara braunii HOM05D004543 ORTHO05D006042 1.2e-176 624.4 611 55.3
BcaNung06004 Brassica carinata HOM05D004543 ORTHO05D006042 7.0e-174 615.1 706 48.6
A03p08790 Brassica napus HOM05D004543 ORTHO05D006042 5.9e-173 612.1 741 46.2
Psat0s3466g0040 Pisum sativum HOM05D004543 ORTHO05D006042 1.7e-172 610.5 631 52.6
AUR62025843 Chenopodium quinoa HOM05D004543 ORTHO05D006042 8.6e-172 608.2 658 50.3
C03p10280 Brassica napus HOM05D004543 ORTHO05D006042 4.7e-170 602.4 751 45.3
BraA03t10204Z Brassica rapa HOM05D004543 ORTHO05D006042 4.7e-170 602.4 751 45.3
HPP92_007000 Vanilla planifolia HOM05D004543 ORTHO05D006042 3.4e-168 596.3 746 46.9
SHI28598 Sapria himalayana HOM05D004543 ORTHO05D006042 1.3e-167 594.3 815 42.6
FAN08G2446 Fragaria x ananassa HOM05D004543 ORTHO05D006042 2.8e-167 593.2 771 44.9
BolC3t13508H Brassica oleracea HOM05D004543 ORTHO05D006042 1.8e-166 590.5 740 45.1
BcaB01g05188 Brassica carinata HOM05D004543 ORTHO05D006042 9.8e-160 568.2 716 44.0
TPR.G19235 Trifolium pratense HOM05D004543 ORTHO05D006042 2.5e-147 526.9 649 47.0
Sc04g0000730 Simmondsia chinensis HOM05D004543 ORTHO05D006042 5.2e-145 519.2 528 53.0
Dinv04875 Davidia involucrata HOM05D004543 ORTHO05D006042 6.8e-145 518.8 519 52.4
Solyc08g006660.2 Solanum lycopersicum HOM05D004543 ORTHO05D006042 5.1e-140 502.7 542 50.4
Rhsim08G0188800 Rhododendron simsii HOM05D004543 ORTHO05D006042 1.9e-139 500.7 519 50.5
BcaNung04937 Brassica carinata HOM05D004543 ORTHO05D006042 6.2e-138 495.7 712 41.4
CARHR232260 Cardamine hirsuta HOM05D004543 ORTHO05D006042 6.6e-132 475.7 527 48.2
PRCOL_00002621 Prasinoderma coloniale HOM05D004543 ORTHO05D006042 2.5e-123 447.2 726 36.8
DCAR_026221 Daucus carota HOM05D004543 ORTHO05D006042 1.1e-107 395.2 754 35.9
Sabra12G0070400 Salix brachista HOM05D004543 ORTHO05D006042 3.7e-106 390.2 392 55.1
Zm00001eb064480 Zea mays HOM05D004543 ORTHO05D006042 2.3e-100 370.9 366 54.6
MCO07G105 Micromonas commoda HOM05D004543 ORTHO05D006042 8.8e-92 342.4 750 32.3
Cre09.g402750 Chlamydomonas reinhardtii HOM05D004543 ORTHO05D006042 2.6e-83 314.3 839 29.3
Manes.14G052401 Manihot esculenta HOM05D004543 ORTHO05D006042 1.8e-73 281.6 347 45.2
Medtr3g105000 Medicago truncatula HOM05D004543 ORTHO05D006042 4.4e-59 233.8 469 34.3
Sc04g0000720 Simmondsia chinensis HOM05D004543 ORTHO05D006042 6.1e-53 213.4 227 52.4
HPP92_006979 Vanilla planifolia HOM05D004543 ORTHO05D006042 3.1e-49 201.1 531 31.5
Hma1.2p1_0140F.1_g063450 Hydrangea macrophylla HOM05D004543 ORTHO05D006042 3.5e-48 197.6 216 47.2
Hma1.2p1_0140F.1_g063430 Hydrangea macrophylla HOM05D004543 ORTHO05D006042 6.8e-28 130.2 222 39.6
Medtr7g104380 Medicago truncatula HOM05D004543 ORTHO05D006042 1.6e-24 119.0 136 47.8
SEGI_01008 Sequoiadendron giganteum HOM05D004543 ORTHO05D037602 3.5e-24 117.9 113 50.4
Rhsim02G0055400 Rhododendron simsii HOM05D004543 ORTHO05D006042 1.0e-23 116.3 87 65.5
SMO117G0159 Selaginella moellendorffii HOM05D004543 ORTHO05D006042 1.1e-22 112.8 93 61.3
Medtr3g105005 Medicago truncatula HOM05D004543 ORTHO05D006042 2.5e-22 111.7 199 38.2
TPR.G18590 Trifolium pratense HOM05D001327 ORTHO05D002270 4.0e-20 104.4 117 47.9
Lsat_1_v5_gn_5_92440 Lactuca sativa HOM05D004543 ORTHO05D006042 1.5e-19 102.4 148 42.6
Rhsim05G0168000 Rhododendron simsii HOM05D003391 ORTHO05D005563 3.4e-19 101.3 75 65.3
Rhsim04G0209800 Rhododendron simsii HOM05D004543 ORTHO05D006042 1.3e-18 99.4 76 64.5
SMO250G0003 Selaginella moellendorffii HOM05D004543 ORTHO05D006042 1.0e-15 89.7 66 68.2
TPR.G34490 Trifolium pratense HOM05D004543 ORTHO05D006042 3.9e-15 87.8 100 46.0
PSO675G5444 Papaver somniferum HOM05D004543 ORTHO05D010954 9.0e-12 76.6 169 33.1
SMO301G0055 Selaginella moellendorffii HOM05D004543 ORTHO05D000231 2.0e-11 75.5 116 38.8
vmacro20276 Vaccinium macrocarpon HOM05D004543 ORTHO05D037602 1.7e-10 72.4 218 28.0
Manes.14G052501 Manihot esculenta HOM05D004543 ORTHO05D006042 2.4e-09 68.6 113 40.7
TPR.G19226 Trifolium pratense HOM05D004543 ORTHO05D006042 3.0e-07 61.6 68 50.0
Lsat_1_v5_gn_3_118241 Lactuca sativa HOM05D004543 ORTHO05D001664 8.7e-07 60.1 100 37.0


User provided reference genes

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