Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c17_19100 Physcomitrium patens HOM05D003357 ORTHO05D003779 1.2e-110 403.3 224 100.0
PSO017G4220 Papaver somniferum HOM05D003357 ORTHO05D003779 6.5e-19 98.6 165 32.7
SEGI_11822 Sequoiadendron giganteum HOM05D003357 ORTHO05D003779 6.5e-19 98.6 216 29.6
MBI06_g01047_MAGBIO Magnolia biondii HOM05D003357 ORTHO05D003779 9.3e-18 94.7 158 34.8
AagrBONN_evm.TU.Sc2ySwM_228.3124 Anthoceros agrestis HOM05D003357 ORTHO05D003779 2.7e-17 93.2 211 28.0
SMO164G0048 Selaginella moellendorffii HOM05D003357 ORTHO05D003779 6.1e-17 92.0 168 31.0
CDE06G2726 Ceratophyllum demersum HOM05D003357 ORTHO05D003779 8.7e-16 88.2 167 31.7
CDE06G1413 Ceratophyllum demersum HOM05D003357 ORTHO05D003779 1.1e-15 87.8 167 31.1
Dinv24254 Davidia involucrata HOM05D003357 ORTHO05D003779 1.5e-15 87.4 159 30.2
Os03g0262700 Oryza sativa ssp. japonica HOM05D003357 ORTHO05D003779 1.5e-15 87.4 170 30.6
Actinidia39063 Actinidia chinensis HOM05D003357 ORTHO05D003779 2.5e-15 86.7 160 30.0
Solyc01g104580.3 Solanum lycopersicum HOM05D003357 ORTHO05D003779 2.5e-15 86.7 159 30.8
Sopen01g047090 Solanum pennellii HOM05D003357 ORTHO05D003779 2.5e-15 86.7 159 30.8
HPP92_011155 Vanilla planifolia HOM05D003357 ORTHO05D003779 3.3e-15 86.3 168 31.0
CAN.G1352.13 Capsicum annuum HOM05D003357 ORTHO05D003779 4.3e-15 85.9 159 30.8
PGSC0003DMG400029777 Solanum tuberosum HOM05D003357 ORTHO05D003779 4.3e-15 85.9 159 30.8
TAR197G0001 Trochodendron aralioides HOM05D003357 ORTHO05D003779 5.7e-15 85.5 159 30.8
Peaxi162Scf00003g03752 Petunia axillaris HOM05D003357 ORTHO05D003779 7.4e-15 85.1 160 30.0
Cpa.g.sc2.31 Carica papaya HOM05D003357 ORTHO05D003779 1.3e-14 84.3 166 28.3
PSO170G2411 Papaver somniferum HOM05D003357 ORTHO05D003779 1.3e-14 84.3 166 31.3
SalBow5G0183 Salvia bowleyana HOM05D003357 ORTHO05D003779 1.6e-14 84.0 158 29.7
Zm00001eb011530 Zea mays HOM05D003357 ORTHO05D003779 2.8e-14 83.2 164 30.5
Lj9A312T45 Lonicera japonica HOM05D003357 ORTHO05D003779 6.3e-14 82.0 158 29.7
Sc02g0001800 Simmondsia chinensis HOM05D003357 ORTHO05D003779 6.3e-14 82.0 170 27.1
Hma1.2p1_0704F.1_g206850 Hydrangea macrophylla HOM05D003357 ORTHO05D003779 8.2e-14 81.6 161 28.6
Migut.B00658 Erythranthe guttata HOM05D003357 ORTHO05D003779 1.1e-13 81.3 158 27.2
CSS0046968 Camellia sinensis var. sinensis HOM05D003357 ORTHO05D003779 1.8e-13 80.5 164 28.0
Migut.N01027 Erythranthe guttata HOM05D003357 ORTHO05D003779 1.8e-13 80.5 159 27.7
Sed0024772 Sechium edule HOM05D003357 ORTHO05D003779 1.8e-13 80.5 159 27.0
Lsat_1_v5_gn_5_107641 Lactuca sativa HOM05D003357 ORTHO05D003779 3.1e-13 79.7 168 29.8
ClCG00G003530 Citrullus lanatus HOM05D003357 ORTHO05D003779 4.1e-13 79.3 158 27.2
ClCG09G014530 Citrullus lanatus HOM05D003357 ORTHO05D003779 4.1e-13 79.3 158 27.2
MELO3C012699.2 Cucumis melo HOM05D003357 ORTHO05D003779 4.1e-13 79.3 158 27.2
HanXRQChr10g0300241 Helianthus annuus HOM05D003357 ORTHO05D003779 4.1e-13 79.3 162 27.8
CiPaw.06G149700 Carya illinoinensis HOM05D003357 ORTHO05D003779 5.3e-13 79.0 165 27.9
CsaV3_7G022210 Cucumis sativus L. HOM05D003357 ORTHO05D003779 5.3e-13 79.0 157 27.4
Pp3c9_6730 Physcomitrium patens HOM05D003357 ORTHO05D003779 5.3e-13 79.0 171 31.6
Cfa005555 Carpinus fangiana HOM05D003357 ORTHO05D003779 6.9e-13 78.6 166 28.3
Peaxi162Scf00011g00031 Petunia axillaris HOM05D003357 ORTHO05D003779 6.9e-13 78.6 169 27.8
QL11p019146 Quercus lobata HOM05D003357 ORTHO05D003779 9.0e-13 78.2 167 28.1
ATR0121G007 Amborella trichopoda HOM05D003357 ORTHO05D003779 1.2e-12 77.8 174 29.3
Aqoxy5G02480 Aquilegia oxysepala HOM05D003357 ORTHO05D003779 1.5e-12 77.4 173 29.5
Ca_29933_v3 Cicer arietinum L. HOM05D003357 ORTHO05D003779 1.5e-12 77.4 158 27.8
Manes.07G012600 Manihot esculenta HOM05D003357 ORTHO05D003779 2.0e-12 77.0 167 27.5
Dinv19344 Davidia involucrata HOM05D003357 ORTHO05D003779 2.6e-12 76.6 163 28.8
ECA234G2199 Erigeron canadensis HOM05D003357 ORTHO05D003779 2.6e-12 76.6 117 33.3
HPP92_027206 Vanilla planifolia HOM05D003357 ORTHO05D003779 2.6e-12 76.6 164 28.0
CiPaw.05G042100 Carya illinoinensis HOM05D003357 ORTHO05D003779 3.4e-12 76.3 170 27.1
PGR142G3651 Punica granatum HOM05D003357 ORTHO05D003779 3.4e-12 76.3 171 27.5
Gohir.D01G000900 Gossypium hirsutum HOM05D003357 ORTHO05D003779 4.5e-12 75.9 175 25.7
Gorai.002G001400 Gossypium raimondii HOM05D003357 ORTHO05D003779 4.5e-12 75.9 175 25.7
SEGI_24152 Sequoiadendron giganteum HOM05D003357 ORTHO05D003779 4.5e-12 75.9 206 30.6
Glyma.08G184000 Glycine max HOM05D003357 ORTHO05D003779 5.9e-12 75.5 158 27.2
Thecc.02G042200 Theobroma cacao HOM05D003357 ORTHO05D003779 5.9e-12 75.5 169 26.6
Duzib248G1129 Durio zibethinus HOM05D003357 ORTHO05D003779 7.7e-12 75.1 169 26.6
Ciclev10002130m.g Citrus clementina HOM05D003357 ORTHO05D003779 1.3e-11 74.3 171 26.9
Gohir.A01G001200 Gossypium hirsutum HOM05D003357 ORTHO05D003779 1.3e-11 74.3 175 25.1
Medtr2g007830 Medicago truncatula HOM05D003357 ORTHO05D003779 1.3e-11 74.3 160 26.9
Phvul.006G211600 Phaseolus vulgaris HOM05D003357 ORTHO05D003779 1.3e-11 74.3 158 27.2
Gohir.A03G210600 Gossypium hirsutum HOM05D003357 ORTHO05D003779 1.7e-11 73.9 169 26.0
unitig_749.g13510 Utricularia gibba HOM05D000349 ORTHO05D003779 1.7e-11 73.9 159 26.4
VMungo0540G1809 Vigna mungo HOM05D003357 ORTHO05D003779 1.7e-11 73.9 158 27.2
Gohir.D02G232200 Gossypium hirsutum HOM05D003357 ORTHO05D003779 2.2e-11 73.6 169 26.0
Gorai.005G260000 Gossypium raimondii HOM05D003357 ORTHO05D003779 2.2e-11 73.6 169 26.0
Lalb_Chr20g0123351 Lupinus albus HOM05D003357 ORTHO05D003779 2.2e-11 73.6 162 26.5
MD08G1227400 Malus domestica HOM05D003357 ORTHO05D003779 3.8e-11 72.8 165 26.1
Manes.10G133000 Manihot esculenta HOM05D003357 ORTHO05D003779 3.8e-11 72.8 171 26.3
HanXRQChr16g0514191 Helianthus annuus HOM05D003357 ORTHO05D003779 5.0e-11 72.4 176 26.1
Lsat_1_v5_gn_9_116201 Lactuca sativa HOM05D003357 ORTHO05D003779 5.0e-11 72.4 169 26.0
CANSAT11G1252 Cannabis sativa HOM05D003357 ORTHO05D003779 6.5e-11 72.0 117 31.6
CBR_g44534 Chara braunii HOM05D006357 ORTHO05D007925 6.5e-11 72.0 163 25.8
Zm00001eb398130 Zea mays HOM05D003357 ORTHO05D003779 1.1e-10 71.2 138 32.6
Glyma.15G048800 Glycine max HOM05D003357 ORTHO05D003779 1.4e-10 70.9 157 26.1
Lj6g0024688 Lotus japonicus HOM05D003357 ORTHO05D003779 4.2e-10 69.3 158 25.3
Potri.003G021934 Populus trichocarpa HOM05D003357 ORTHO05D003779 4.2e-10 69.3 175 25.7
Duzib052G0578 Durio zibethinus HOM05D003357 ORTHO05D003779 5.5e-10 68.9 128 28.9
Lj5C246T11 Lonicera japonica HOM05D003357 ORTHO05D003779 9.4e-10 68.2 134 29.9
CANSAT56G4096 Cannabis sativa HOM05D003357 ORTHO05D003779 1.2e-09 67.8 163 27.6
Potri.001G208000 Populus trichocarpa HOM05D003357 ORTHO05D003779 1.6e-09 67.4 175 25.7
Prupe.1G564500 Prunus persica HOM05D003357 ORTHO05D003779 2.7e-09 66.6 117 29.9
Cc02_g22170 Coffea canephora HOM05D003357 ORTHO05D003779 4.6e-09 65.9 97 35.1
FAN13G0157 Fragaria x ananassa HOM05D003357 ORTHO05D003779 4.6e-09 65.9 159 26.4
MD15G1419800 Malus domestica HOM05D003357 ORTHO05D003779 6.1e-09 65.5 165 23.6
FAN08G0651 Fragaria x ananassa HOM05D003357 ORTHO05D003779 7.9e-09 65.1 159 25.8
RcHm_v2.0_Chr7g0223311 Rosa chinensis HOM05D003357 ORTHO05D003779 7.9e-09 65.1 128 29.7
FvH4_5g29780 Fragaria vesca HOM05D003357 ORTHO05D003779 1.4e-08 64.3 159 25.8
FAN18G4337 Fragaria x ananassa HOM05D003357 ORTHO05D003779 1.4e-08 64.3 159 25.8
arahy.Tifrunner.gnm1.ann1.S31UIX Arachis hypogaea HOM05D003357 ORTHO05D003779 3.0e-08 63.2 160 26.2
CBR_g8625 Chara braunii HOM05D000973 ORTHO05D000652 6.7e-08 62.0 166 26.5
HanXRQChr03g0066581 Helianthus annuus HOM05D003357 ORTHO05D003779 2.0e-07 60.5 117 29.9
RcHm_v2.0_Chr2g0147641 Rosa chinensis HOM05D003357 ORTHO05D003779 3.3e-07 59.7 162 27.8
Aa31LG11G12460 Aethionema arabicum HOM05D000172 ORTHO05D000273 4.4e-07 59.3 198 24.2
Glyma.08G077900 Glycine max HOM05D003357 ORTHO05D003779 5.7e-07 58.9 160 24.4
GSVIVG01029690001 Vitis vinifera HOM05D003357 ORTHO05D003779 7.4e-07 58.5 97 30.9
CiPaw.02G035800 Carya illinoinensis HOM05D000172 ORTHO05D000273 1.3e-06 57.8 168 28.0
Manes.01G111900 Manihot esculenta HOM05D003357 ORTHO05D003779 4.8e-06 55.8 160 24.4


User provided reference genes

Program Settings