Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c17_17470 Physcomitrium patens HOM05D003640 ORTHO05D004439 0.0e+00 1866.3 1023 100.0
Pp3c14_13150 Physcomitrium patens HOM05D003640 ORTHO05D004439 0.0e+00 1155.2 1035 65.5
Mapoly0021s0043 Marchantia polymorpha HOM05D003640 ORTHO05D004439 2.7e-144 517.3 1147 38.8
TAR375G0550 Trochodendron aralioides HOM05D003640 ORTHO05D004439 2.3e-79 301.6 746 35.1
Nn1g00405 Nelumbo nucifera HOM05D003640 ORTHO05D004439 3.0e-79 301.2 785 33.5
Nn3g18833 Nelumbo nucifera HOM05D003640 ORTHO05D004439 5.7e-78 297.0 802 34.4
TAR629G0154 Trochodendron aralioides HOM05D003640 ORTHO05D004439 7.4e-78 296.6 794 34.1
MBI12_g23004_MAGBIO Magnolia biondii HOM05D003640 ORTHO05D004439 1.3e-77 295.8 746 33.9
Prupe.2G317300 Prunus persica HOM05D003640 ORTHO05D004439 1.5e-75 288.9 734 34.5
GSVIVG01038625001 Vitis vinifera HOM05D003640 ORTHO05D004439 5.9e-75 287.0 744 33.3
Dinv29226 Davidia involucrata HOM05D003640 ORTHO05D004439 9.4e-73 279.6 789 33.0
ClCG01G000140 Citrullus lanatus HOM05D003640 ORTHO05D004439 4.6e-72 277.3 793 32.2
Aqoxy7G00014 Aquilegia oxysepala HOM05D003640 ORTHO05D004439 7.9e-72 276.6 820 33.2
TAR636G3562 Trochodendron aralioides HOM05D003640 ORTHO05D004439 1.7e-69 268.9 920 31.6
Actinidia34257 Actinidia chinensis HOM05D003640 ORTHO05D004439 2.2e-69 268.5 856 31.5
Potri.012G023200 Populus trichocarpa HOM05D003640 ORTHO05D004439 2.2e-69 268.5 812 32.3
Atru.chr12.2367 Acer truncatum HOM05D003640 ORTHO05D004439 6.3e-69 266.9 733 33.2
CSS0041088 Camellia sinensis var. sinensis HOM05D003640 ORTHO05D004439 1.1e-68 266.2 811 32.7
FvH4_7g32660 Fragaria vesca HOM05D003640 ORTHO05D004439 1.1e-68 266.2 810 31.6
FAN01G0295 Fragaria x ananassa HOM05D003640 ORTHO05D004439 1.4e-68 265.8 810 31.6
Glyma.06G134300 Glycine max HOM05D003640 ORTHO05D004439 2.4e-68 265.0 742 31.5
PSO135G0929 Papaver somniferum HOM05D003640 ORTHO05D004439 6.9e-68 263.5 785 31.8
CsaV3_5G000020 Cucumis sativus L. HOM05D003640 ORTHO05D004439 1.2e-67 262.7 795 32.3
Actinidia08687 Actinidia chinensis HOM05D003640 ORTHO05D004439 2.0e-67 261.9 862 30.9
PSO384G0385 Papaver somniferum HOM05D003640 ORTHO05D004439 2.6e-67 261.5 780 32.4
ATR0580G072 Amborella trichopoda HOM05D003640 ORTHO05D004439 3.4e-67 261.2 891 31.9
vmacro06427 Vaccinium macrocarpon HOM05D003640 ORTHO05D004439 6.5e-66 256.9 805 31.6
Zm00001eb037420 Zea mays HOM05D003640 ORTHO05D004439 1.1e-65 256.1 787 32.0
Zm00001eb198460 Zea mays HOM05D003640 ORTHO05D004439 1.1e-65 256.1 816 32.4
Sed0021595 Sechium edule HOM05D003640 ORTHO05D004439 1.4e-65 255.8 898 29.5
Manes.01G041300 Manihot esculenta HOM05D003640 ORTHO05D004439 2.5e-65 255.0 742 32.2
MELO3C005925.2 Cucumis melo HOM05D003640 ORTHO05D004439 4.2e-65 254.2 905 29.9
Sed0000635 Sechium edule HOM05D003640 ORTHO05D004439 4.2e-65 254.2 777 31.1
MD01G1227300 Malus domestica HOM05D003640 ORTHO05D004439 1.6e-64 252.3 774 32.4
Lj1g0027227 Lotus japonicus HOM05D003640 ORTHO05D004439 2.7e-64 251.5 789 30.3
Sabra15G0004700 Salix brachista HOM05D003640 ORTHO05D004439 3.6e-64 251.1 738 31.0
Actinidia28276 Actinidia chinensis HOM05D003640 ORTHO05D004439 7.9e-64 250.0 911 29.6
RcHm_v2.0_Chr1g0382521 Rosa chinensis HOM05D003640 ORTHO05D004439 1.0e-63 249.6 743 32.6
Oeu037965.1 Olea europaea HOM05D003640 ORTHO05D004439 1.8e-63 248.8 837 31.2
Potri.015G006700 Populus trichocarpa HOM05D003640 ORTHO05D004439 8.8e-63 246.5 808 30.6
FAN10G0822 Fragaria x ananassa HOM05D003640 ORTHO05D004439 2.0e-62 245.4 810 30.7
PGR142G2086 Punica granatum HOM05D003640 ORTHO05D004439 2.0e-62 245.4 799 31.5
Rhsim03G0214000 Rhododendron simsii HOM05D003640 ORTHO05D004439 3.3e-62 244.6 753 31.7
FAN10G2795 Fragaria x ananassa HOM05D003640 ORTHO05D004439 4.4e-62 244.2 806 31.1
QL09p007408 Quercus lobata HOM05D003640 ORTHO05D004439 4.4e-62 244.2 738 30.9
CANSAT21G0645 Cannabis sativa HOM05D003640 ORTHO05D004439 7.4e-62 243.4 840 30.5
QL93p0214_0013 Quercus lobata HOM05D003640 ORTHO05D004439 1.3e-61 242.7 779 30.4
Duzib084G0116 Durio zibethinus HOM05D003640 ORTHO05D004439 1.7e-61 242.3 870 30.6
Lalb_Chr23g0271841 Lupinus albus HOM05D003640 ORTHO05D004439 8.2e-61 240.0 742 31.1
Lalb_Chr08g0239801 Lupinus albus HOM05D003640 ORTHO05D004439 1.4e-60 239.2 898 29.2
MD07G1297600 Malus domestica HOM05D003640 ORTHO05D004439 3.1e-60 238.0 875 31.3
Os08g0543600 Oryza sativa ssp. japonica HOM05D003640 ORTHO05D004439 3.1e-60 238.0 871 30.8
TWI39G1295 Tripterygium wilfordii HOM05D003640 ORTHO05D004439 3.1e-60 238.0 796 29.5
FAN03G1455 Fragaria x ananassa HOM05D003640 ORTHO05D004439 1.2e-59 236.1 815 30.6
arahy.Tifrunner.gnm1.ann1.1EDB5Y Arachis hypogaea HOM05D003640 ORTHO05D004439 1.5e-59 235.7 891 29.7
MSTRG.8540 Avicennia marina HOM05D003640 ORTHO05D004439 1.5e-59 235.7 746 31.8
Medtr3g092250 Medicago truncatula HOM05D003640 ORTHO05D004439 2.6e-59 235.0 811 29.7
CDE04G2417 Ceratophyllum demersum HOM05D003640 ORTHO05D004439 3.5e-59 234.6 779 29.4
Sabra12G0010700 Salix brachista HOM05D003640 ORTHO05D004439 4.5e-59 234.2 844 29.3
Hund09700 Selenicereus undatus HOM05D003640 ORTHO05D004439 1.0e-58 233.0 774 30.0
Ca_16756_v3 Cicer arietinum L. HOM05D003640 ORTHO05D004439 1.3e-58 232.6 885 28.7
Haze_00277 Corylus avellana HOM05D003640 ORTHO05D004439 1.3e-58 232.6 970 28.8
SGA_v2.0_scaffold565G52945 Striga asiatica HOM05D003640 ORTHO05D004439 2.9e-58 231.5 765 30.6
DCAR_020359 Daucus carota HOM05D003640 ORTHO05D004439 3.8e-58 231.1 802 29.6
Cc02_g00960 Coffea canephora HOM05D003640 ORTHO05D004439 5.0e-58 230.7 865 30.5
Lalb_Chr11g0067271 Lupinus albus HOM05D003640 ORTHO05D004439 8.5e-58 229.9 848 29.1
SEGI_36158 Sequoiadendron giganteum HOM05D003640 ORTHO05D004439 1.4e-57 229.2 467 34.9
Nitab4.5_0001993g0040 Nicotiana tabacum HOM05D003640 ORTHO05D004439 1.9e-57 228.8 846 29.4
Solyc03g082490.4 Solanum lycopersicum HOM05D003640 ORTHO05D004439 2.5e-57 228.4 851 28.8
MSTRG.8618 Avicennia marina HOM05D003640 ORTHO05D004439 3.2e-57 228.0 756 31.0
DCAR_008967 Daucus carota HOM05D003640 ORTHO05D004439 3.2e-57 228.0 811 30.3
Hund21040 Selenicereus undatus HOM05D003640 ORTHO05D004439 3.2e-57 228.0 805 30.1
arahy.Tifrunner.gnm1.ann1.BT3HV7 Arachis hypogaea HOM05D003640 ORTHO05D004439 4.2e-57 227.6 916 29.7
CiPaw.06G042300 Carya illinoinensis HOM05D003640 ORTHO05D004439 4.2e-57 227.6 804 30.2
VMungo1309G3003 Vigna mungo HOM05D003640 ORTHO05D004439 5.5e-57 227.3 911 28.8
AUR62006022 Chenopodium quinoa HOM05D003640 ORTHO05D004439 7.2e-57 226.9 812 30.8
Duzib068G1167 Durio zibethinus HOM05D003640 ORTHO05D004439 7.2e-57 226.9 872 28.9
CAN.G358.147 Capsicum annuum HOM05D003640 ORTHO05D004439 8.0e-56 223.4 724 29.1
Aa31sc289G20 Aethionema arabicum HOM05D003640 ORTHO05D004439 1.4e-55 222.6 756 30.3
Migut.F00997 Erythranthe guttata HOM05D003640 ORTHO05D004439 1.8e-55 222.2 954 28.7
EL10Ac3g05201 Beta vulgaris HOM05D003640 ORTHO05D004439 3.9e-55 221.1 797 29.6
AT5G53620 Arabidopsis thaliana HOM05D003640 ORTHO05D004439 6.7e-55 220.3 695 31.8
MSTRG.26989 Avicennia marina HOM05D003640 ORTHO05D004439 6.7e-55 220.3 821 29.1
HPP92_020943 Vanilla planifolia HOM05D003640 ORTHO05D008613 6.7e-55 220.3 873 30.1
Oeu061023.1 Olea europaea HOM05D003640 ORTHO05D004439 2.0e-54 218.8 832 29.3
SalBow6G0961 Salvia bowleyana HOM05D003640 ORTHO05D004439 2.6e-54 218.4 754 28.9
Dinv35374 Davidia involucrata HOM05D003640 ORTHO05D004439 3.3e-54 218.0 829 29.7
THA.LOC104825162 Tarenaya hassleriana HOM05D003640 ORTHO05D004439 3.3e-54 218.0 744 30.0
Glyma.04G230800 Glycine max HOM05D003640 ORTHO05D004439 5.7e-54 217.2 891 28.3
unitig_92.g28243 Utricularia gibba HOM05D003640 ORTHO05D004439 5.7e-54 217.2 746 29.0
AL8G28460 Arabidopsis lyrata HOM05D003640 ORTHO05D004439 2.2e-53 215.3 707 32.1
CiPaw.05G202900 Carya illinoinensis HOM05D003640 ORTHO05D004439 2.2e-53 215.3 813 29.2
PSO063G3729 Papaver somniferum HOM05D003640 ORTHO05D004439 6.3e-53 213.8 791 28.8
CARHR266770 Cardamine hirsuta HOM05D003640 ORTHO05D004439 8.2e-53 213.4 738 29.9
Psat0s2807g0080 Pisum sativum HOM05D003640 ORTHO05D004439 1.1e-52 213.0 844 28.3
Lsat_1_v5_gn_9_50221 Lactuca sativa HOM05D003640 ORTHO05D004439 7.0e-52 210.3 731 29.5
Gohir.D09G181300 Gossypium hirsutum HOM05D003640 ORTHO05D004439 3.5e-51 208.0 853 28.1
AUR62035604 Chenopodium quinoa HOM05D003640 ORTHO05D004439 4.5e-51 207.6 812 29.1
Gohir.A09G186400 Gossypium hirsutum HOM05D003640 ORTHO05D004439 4.5e-51 207.6 849 30.5
CSS0045837 Camellia sinensis var. sinensis HOM05D003640 ORTHO05D004439 7.7e-51 206.8 826 30.1
Lsat_1_v5_gn_9_50181 Lactuca sativa HOM05D003640 ORTHO05D004439 7.7e-51 206.8 726 30.2
ECA232G0587 Erigeron canadensis HOM05D003640 ORTHO05D004439 1.3e-50 206.1 735 28.8
Oeu055180.3 Olea europaea HOM05D003640 ORTHO05D004439 6.5e-50 203.8 889 28.8
Carub.0008s1383 Capsella rubella HOM05D003640 ORTHO05D004439 1.5e-49 202.6 693 29.4
Gohir.D12G247700 Gossypium hirsutum HOM05D003640 ORTHO05D004439 1.5e-49 202.6 899 28.9
Gorai.008G265800 Gossypium raimondii HOM05D003640 ORTHO05D004439 3.2e-49 201.4 854 29.2
Gohir.A12G247000 Gossypium hirsutum HOM05D003640 ORTHO05D004439 4.2e-49 201.1 897 28.7
HanXRQChr15g0485391 Helianthus annuus HOM05D003640 ORTHO05D004439 9.4e-49 199.9 865 29.2
Phvul.009G050200 Phaseolus vulgaris HOM05D003640 ORTHO05D004439 9.4e-49 199.9 912 28.4
SGA_v2.0_scaffold136G35055 Striga asiatica HOM05D003640 ORTHO05D004439 9.4e-49 199.9 827 28.3
CARHR266800 Cardamine hirsuta HOM05D003640 ORTHO05D004439 1.6e-48 199.1 714 29.6
Hma1.2p1_0094F.1_g047240 Hydrangea macrophylla HOM05D003640 ORTHO05D004439 1.6e-48 199.1 883 29.1
Sc19g0000670 Simmondsia chinensis HOM05D003640 ORTHO05D004439 6.1e-48 197.2 666 29.6
HanXRQChr05g0139301 Helianthus annuus HOM05D003640 ORTHO05D004439 8.0e-48 196.8 806 28.5
Thecc.03G206700 Theobroma cacao HOM05D003640 ORTHO05D004439 1.0e-47 196.4 937 27.9
Gohir.D08G115200 Gossypium hirsutum HOM05D003640 ORTHO05D004439 1.4e-47 196.1 840 27.9
SalBow2G2490 Salvia bowleyana HOM05D003640 ORTHO05D004439 1.8e-47 195.7 766 29.8
Gorai.004G124100 Gossypium raimondii HOM05D003640 ORTHO05D004439 2.3e-47 195.3 853 27.4
Sp6g15750 Schrenkiella parvula HOM05D003640 ORTHO05D004439 5.2e-47 194.1 751 28.0
Carub.0008s1397 Capsella rubella HOM05D003640 ORTHO05D004439 4.4e-46 191.0 762 27.8
Gorai.006G203300 Gossypium raimondii HOM05D003640 ORTHO05D004439 4.4e-46 191.0 790 28.0
Gohir.A08G103800 Gossypium hirsutum HOM05D003640 ORTHO05D004439 7.5e-46 190.3 853 28.1
Duzib205G1657 Durio zibethinus HOM05D003640 ORTHO05D004439 9.7e-46 189.9 861 28.9
Thhalv10012857m.g Eutrema salsugineum HOM05D003640 ORTHO05D004439 3.5e-43 181.4 733 28.2
Sopen03g022220 Solanum pennellii HOM05D003640 ORTHO05D004439 1.3e-42 179.5 797 27.6
TWI23G0563 Tripterygium wilfordii HOM05D003640 ORTHO05D004439 2.5e-41 175.3 413 32.2
COL.COLO4_14351 Corchorus olitorius HOM05D003640 ORTHO05D004439 1.6e-40 172.6 677 27.6
BolC3t14166H Brassica oleracea HOM05D003640 ORTHO05D004439 1.0e-39 169.9 730 27.5
Ah.07g204850 Amaranthus hybridus HOM05D003640 ORTHO05D004439 1.8e-39 169.1 805 27.1
BcaB01g04251 Brassica carinata HOM05D003640 ORTHO05D004439 2.3e-39 168.7 738 27.6
C03p17530 Brassica napus HOM05D003640 ORTHO05D004439 2.6e-38 165.2 729 27.4
Lj1C1026T8 Lonicera japonica HOM05D003640 ORTHO05D004439 5.7e-38 164.1 757 27.9
BraA03t10798Z Brassica rapa HOM05D003640 ORTHO05D004439 9.8e-38 163.3 731 27.6
Sp6g15760 Schrenkiella parvula HOM05D003640 ORTHO05D004439 1.8e-36 159.1 656 30.2
A03p15040 Brassica napus HOM05D003640 ORTHO05D004439 3.1e-36 158.3 730 27.5
QL09p007399 Quercus lobata HOM05D003640 ORTHO05D004439 1.8e-31 142.5 301 33.6
QL93p0214_0021 Quercus lobata HOM05D003640 ORTHO05D004439 1.8e-31 142.5 301 33.6
BcaB05g22060 Brassica carinata HOM05D003640 ORTHO05D004439 4.4e-30 137.9 708 27.4
Cpa.g.sc3.144 Carica papaya HOM05D003640 ORTHO05D004439 3.7e-29 134.8 610 27.9
SHI02298 Sapria himalayana HOM05D003640 ORTHO05D004439 2.9e-26 125.2 422 27.3
BcaC01g06262 Brassica carinata HOM05D003640 ORTHO05D004439 1.5e-25 122.9 213 37.6
RcHm_v2.0_Chr1g0382611 Rosa chinensis HOM05D003640 ORTHO05D004439 1.9e-25 122.5 206 42.2
BcaB01g04247 Brassica carinata HOM05D003640 ORTHO05D004439 2.1e-24 119.0 732 24.9
C09p43570 Brassica napus HOM05D003640 ORTHO05D004439 9.8e-22 110.2 219 35.6
A03p14940 Brassica napus HOM05D003640 ORTHO05D004439 1.7e-21 109.4 126 49.2
BraA03t10789Z Brassica rapa HOM05D003640 ORTHO05D004439 1.7e-21 109.4 126 49.2
RcHm_v2.0_Chr1g0382641 Rosa chinensis HOM05D003640 ORTHO05D004439 7.0e-20 104.0 110 51.8
CDE04G2700 Ceratophyllum demersum HOM05D003640 ORTHO05D004439 9.2e-20 103.6 93 52.7
unitig_37.g11993 Utricularia gibba HOM05D003640 ORTHO05D004439 8.0e-16 90.5 134 41.8
RcHm_v2.0_Chr1g0382561 Rosa chinensis HOM05D003640 ORTHO05D004439 1.4e-15 89.7 394 29.2
PSO782G5739 Papaver somniferum HOM05D003640 ORTHO05D004439 1.7e-13 82.8 137 38.7
CDE07G0792 Ceratophyllum demersum HOM05D003640 ORTHO05D004439 1.2e-08 66.6 577 21.3
Dinv06471 Davidia involucrata HOM05D003640 ORTHO05D004439 2.8e-08 65.5 47 63.8
HanXRQChr06g0170111 Helianthus annuus HOM05D003640 ORTHO05D004439 8.1e-08 63.9 109 34.9
HanXRQChr15g0479781 Helianthus annuus HOM05D003640 ORTHO05D004439 1.4e-07 63.2 109 35.8
HanXRQChr03g0061701 Helianthus annuus HOM05D003640 ORTHO05D004439 2.3e-07 62.4 157 29.3
BolC9t57241H Brassica oleracea HOM05D003640 ORTHO05D004439 3.1e-07 62.0 128 34.4
RcHm_v2.0_Chr1g0382631 Rosa chinensis HOM05D003640 ORTHO05D004439 3.1e-07 62.0 414 26.1
C09p43560 Brassica napus HOM05D003640 ORTHO05D004439 5.8e-06 57.8 92 41.3
Potri.016G069900 Populus trichocarpa HOM05D003640 ORTHO05D034990 5.8e-06 57.8 73 43.8


User provided reference genes

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