Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c17_17160 Physcomitrium patens HOM05D007273 ORTHO05D009230 3.8e-190 667.9 320 100.0
Mapoly0023s0152 Marchantia polymorpha HOM05D007273 ORTHO05D009230 3.2e-56 223.0 305 43.0
SEGI_31103 Sequoiadendron giganteum HOM05D007273 ORTHO05D009230 1.7e-49 200.7 287 41.8
Dinv12487 Davidia involucrata HOM05D007273 ORTHO05D009230 1.5e-48 197.6 317 36.6
TAR369G0984 Trochodendron aralioides HOM05D007273 ORTHO05D009230 7.3e-48 195.3 299 39.1
Nn2g15217 Nelumbo nucifera HOM05D007273 ORTHO05D009230 9.5e-48 194.9 298 40.9
HanXRQChr05g0128781 Helianthus annuus HOM05D007273 ORTHO05D009230 3.4e-45 186.4 308 36.7
Lsat_1_v5_gn_9_29100 Lactuca sativa HOM05D007273 ORTHO05D009230 7.5e-45 185.3 298 38.3
Rhsim03G0024900 Rhododendron simsii HOM05D007273 ORTHO05D009230 9.8e-45 184.9 305 36.4
ECA247G0394 Erigeron canadensis HOM05D007273 ORTHO05D009230 1.7e-44 184.1 298 37.9
Actinidia39224 Actinidia chinensis HOM05D007273 ORTHO05D009230 2.2e-44 183.7 296 37.8
Solyc02g087600.3 Solanum lycopersicum HOM05D007273 ORTHO05D009230 2.2e-44 183.7 291 40.2
Sopen02g032350 Solanum pennellii HOM05D007273 ORTHO05D009230 2.2e-44 183.7 291 40.2
Rhsim03G0024700 Rhododendron simsii HOM05D007273 ORTHO05D009230 4.9e-44 182.6 291 37.5
SalBow6G5536 Salvia bowleyana HOM05D007273 ORTHO05D009230 4.9e-44 182.6 312 36.2
CAN.G417.4 Capsicum annuum HOM05D007273 ORTHO05D009230 8.3e-44 181.8 291 39.5
Nitab4.5_0000082g0140 Nicotiana tabacum HOM05D007273 ORTHO05D009230 1.1e-43 181.4 296 37.2
vmacro07848 Vaccinium macrocarpon HOM05D007273 ORTHO05D009230 2.4e-43 180.3 306 35.9
Aqoxy1G00330 Aquilegia oxysepala HOM05D007273 ORTHO05D009230 3.2e-43 179.9 303 37.3
PGSC0003DMG401001308 Solanum tuberosum HOM05D007273 ORTHO05D009230 3.2e-43 179.9 291 39.5
Cfa016813 Carpinus fangiana HOM05D007273 ORTHO05D009230 1.2e-42 177.9 290 39.0
PSO339G1789 Papaver somniferum HOM05D007273 ORTHO05D009230 2.0e-42 177.2 302 36.1
Sc25g0005300 Simmondsia chinensis HOM05D007273 ORTHO05D009230 2.0e-42 177.2 301 35.2
AUR62026041 Chenopodium quinoa HOM05D007273 ORTHO05D009230 5.9e-42 175.6 289 38.4
DCAR_003245 Daucus carota HOM05D007273 ORTHO05D009230 1.0e-41 174.9 298 36.2
PSO384G4400 Papaver somniferum HOM05D007273 ORTHO05D009230 2.3e-41 173.7 305 36.4
SGA_v2.0_scaffold69G23119 Striga asiatica HOM05D007273 ORTHO05D009230 2.3e-41 173.7 289 36.7
Migut.J01756 Erythranthe guttata HOM05D007273 ORTHO05D009230 3.0e-41 173.3 279 38.7
AUR62024452 Chenopodium quinoa HOM05D007273 ORTHO05D009230 3.9e-41 172.9 289 37.0
Haze_19853 Corylus avellana HOM05D007273 ORTHO05D009230 5.0e-41 172.6 289 37.4
MSTRG.6428 Avicennia marina HOM05D007273 ORTHO05D009230 6.6e-41 172.2 299 36.1
EL10Ac3g07092 Beta vulgaris HOM05D007273 ORTHO05D009230 6.6e-41 172.2 296 37.5
CANSAT80G2704 Cannabis sativa HOM05D007273 ORTHO05D009230 8.6e-41 171.8 295 37.3
Peaxi162Scf00002g02715 Petunia axillaris HOM05D007273 ORTHO05D009230 1.1e-40 171.4 302 35.4
CANSAT80G0412 Cannabis sativa HOM05D007273 ORTHO05D009230 2.5e-40 170.2 289 37.4
Oeu017941.1 Olea europaea HOM05D007273 ORTHO05D009230 5.6e-40 169.1 293 37.9
Cc06_g17580 Coffea canephora HOM05D007273 ORTHO05D009230 1.2e-39 167.9 289 38.8
Nitab4.5_0010316g0010 Nicotiana tabacum HOM05D007273 ORTHO05D009230 2.8e-39 166.8 282 37.2
Lj1g0021019 Lotus japonicus HOM05D007273 ORTHO05D009230 4.7e-39 166.0 323 34.7
CsaV3_4G011670 Cucumis sativus L. HOM05D007273 ORTHO05D009230 6.2e-39 165.6 289 37.4
CiPaw.09G038500 Carya illinoinensis HOM05D007273 ORTHO05D009230 8.0e-39 165.2 289 37.0
ClCG04G000150 Citrullus lanatus HOM05D007273 ORTHO05D009230 1.4e-38 164.5 297 36.0
Prupe.7G059600 Prunus persica HOM05D007273 ORTHO05D009230 2.3e-38 163.7 290 36.9
QL07p000584 Quercus lobata HOM05D007273 ORTHO05D009230 1.2e-37 161.4 293 37.2
Phvul.001G131900 Phaseolus vulgaris HOM05D007273 ORTHO05D009230 2.0e-37 160.6 300 37.0
Sed0019353 Sechium edule HOM05D007273 ORTHO05D009230 2.0e-37 160.6 287 37.6
Ca_08456_v3 Cicer arietinum L. HOM05D007273 ORTHO05D009230 4.4e-37 159.5 288 37.8
Os12g0142600 Oryza sativa ssp. japonica HOM05D007273 ORTHO05D009230 5.8e-37 159.1 307 33.9
Lalb_Chr01g0017311 Lupinus albus HOM05D007273 ORTHO05D009230 9.8e-37 158.3 290 37.2
MBI17_g14625_MAGBIO Magnolia biondii HOM05D007273 ORTHO05D009230 9.8e-37 158.3 306 36.9
VMungo1383G0084 Vigna mungo HOM05D007273 ORTHO05D009230 9.8e-37 158.3 287 37.6
SMO240G0020 Selaginella moellendorffii HOM05D007273 ORTHO05D009230 2.2e-36 157.1 255 38.8
Glyma.03G136600 Glycine max HOM05D007273 ORTHO05D009230 3.7e-36 156.4 314 35.4
RcHm_v2.0_Chr3g0482541 Rosa chinensis HOM05D007273 ORTHO05D009230 1.9e-35 154.1 289 36.0
Os11g0145100 Oryza sativa ssp. japonica HOM05D007273 ORTHO05D009230 3.2e-35 153.3 293 34.8
HPP92_016047 Vanilla planifolia HOM05D007273 ORTHO05D009230 3.2e-35 153.3 298 35.2
Psat3g072760 Pisum sativum HOM05D007273 ORTHO05D009230 4.1e-35 152.9 302 36.1
Eucgr.A02345 Eucalyptus grandis HOM05D007273 ORTHO05D009230 1.2e-34 151.4 291 34.4
Medtr7g091490 Medicago truncatula HOM05D007273 ORTHO05D009230 1.2e-34 151.4 291 36.1
arahy.Tifrunner.gnm1.ann1.J7IQUN Arachis hypogaea HOM05D007273 ORTHO05D009230 2.7e-34 150.2 293 36.5
ATR0626G250 Amborella trichopoda HOM05D007273 ORTHO05D009230 6.0e-34 149.1 331 30.2
FvH4_6g23860 Fragaria vesca HOM05D007273 ORTHO05D009230 6.0e-34 149.1 302 35.1
FAN05G2271 Fragaria x ananassa HOM05D007273 ORTHO05D009230 6.0e-34 149.1 302 34.8
THA.LOC104802102 Tarenaya hassleriana HOM05D007273 ORTHO05D009230 1.0e-33 148.3 296 36.5
Sabra06G0036200 Salix brachista HOM05D007273 ORTHO05D009230 1.7e-33 147.5 290 34.1
Thhalv10017127m.g Eutrema salsugineum HOM05D007273 ORTHO05D009230 6.6e-33 145.6 290 35.2
Zm00001eb163370 Zea mays HOM05D007273 ORTHO05D009230 6.6e-33 145.6 308 33.4
Cpa.g.sc92.54 Carica papaya HOM05D007273 ORTHO05D009230 8.6e-33 145.2 290 34.8
COL.COLO4_28286 Corchorus olitorius HOM05D007273 ORTHO05D009230 1.1e-32 144.8 289 33.9
Manes.09G022200 Manihot esculenta HOM05D007273 ORTHO05D009230 1.1e-32 144.8 288 34.7
Thecc.05G153100 Theobroma cacao HOM05D007273 ORTHO05D009230 1.1e-32 144.8 299 32.4
TWI74G1215 Tripterygium wilfordii HOM05D007273 ORTHO05D009230 2.5e-32 143.7 294 34.0
Aa31LG1G23760 Aethionema arabicum HOM05D007273 ORTHO05D009230 7.3e-32 142.1 290 34.1
Potri.006G051600 Populus trichocarpa HOM05D007273 ORTHO05D009230 9.5e-32 141.7 290 33.8
PGR004G1947 Punica granatum HOM05D007273 ORTHO05D009230 9.5e-32 141.7 266 35.3
Gohir.D09G118000 Gossypium hirsutum HOM05D007273 ORTHO05D009230 2.8e-31 140.2 299 31.8
Carub.0004s2403 Capsella rubella HOM05D007273 ORTHO05D009230 3.6e-31 139.8 290 33.4
Gohir.A09G121900 Gossypium hirsutum HOM05D007273 ORTHO05D009230 3.6e-31 139.8 299 31.4
Gorai.006G136300 Gossypium raimondii HOM05D007273 ORTHO05D009230 8.1e-31 138.7 299 31.4
CARHR136850 Cardamine hirsuta HOM05D007273 ORTHO05D009230 4.0e-30 136.3 290 33.1
AL4G40060 Arabidopsis lyrata HOM05D007273 ORTHO05D009230 5.8e-29 132.5 290 31.7
MBI17_g36895_MAGBIO Magnolia biondii HOM05D007273 ORTHO05D009230 5.8e-29 132.5 123 52.8
BcaNung02834 Brassica carinata HOM05D007273 ORTHO05D009230 7.5e-29 132.1 300 33.0
AT2G41750 Arabidopsis thaliana HOM05D007273 ORTHO05D009230 2.2e-28 130.6 290 32.8
BolC4t21937H Brassica oleracea HOM05D003650 ORTHO05D004213 1.4e-27 127.9 302 32.1
C04p02970 Brassica napus HOM05D007273 ORTHO05D009230 3.2e-27 126.7 300 31.7
Ciclev10033324m.g Citrus clementina HOM05D007273 ORTHO05D009230 3.2e-27 126.7 290 31.4
Sp4g24020 Schrenkiella parvula HOM05D007273 ORTHO05D009230 3.2e-27 126.7 303 30.7
A05p02510 Brassica napus HOM05D007273 ORTHO05D009230 1.6e-26 124.4 302 31.8
BraA05t19244Z Brassica rapa HOM05D007273 ORTHO05D009230 1.6e-26 124.4 302 31.8
Rhsim03G0024400 Rhododendron simsii HOM05D007273 ORTHO05D009230 3.0e-25 120.2 131 49.6
Rhsim03G0024300 Rhododendron simsii HOM05D007273 ORTHO05D009230 5.1e-25 119.4 131 48.9
unitig_8.g4551 Utricularia gibba HOM05D007273 ORTHO05D009230 4.7e-23 112.8 95 56.8
Lju124C41T6 Lonicera japonica HOM05D007273 ORTHO05D009230 3.2e-19 100.1 100 53.0
FAN09G1358 Fragaria x ananassa HOM05D007273 ORTHO05D009230 2.1e-18 97.4 124 46.0
AagrBONN_evm.TU.Sc2ySwM_228.793 Anthoceros agrestis HOM05D007273 ORTHO05D009230 7.8e-18 95.5 247 28.7
Glyma.19G139000 Glycine max HOM05D007273 ORTHO05D009230 5.6e-16 89.4 93 52.7
Ah.04g151620 Amaranthus hybridus HOM05D007273 ORTHO05D009230 4.0e-14 83.2 71 54.9
Hma1.2p1_1611F.1_g293550 Hydrangea macrophylla HOM05D007273 ORTHO05D009230 1.5e-13 81.3 108 38.9
CSS0001142 Camellia sinensis var. sinensis HOM05D007273 ORTHO05D009230 1.7e-12 77.8 71 50.7
FAN02G1642 Fragaria x ananassa HOM05D007273 ORTHO05D009230 1.3e-09 68.2 64 48.4
A02p10000 Brassica napus HOM05D001404 ORTHO05D008499 3.0e-09 67.0 307 24.1
BraA02t06064Z Brassica rapa HOM05D001404 ORTHO05D002309 3.0e-09 67.0 307 24.1
Rhsim03G0023900 Rhododendron simsii HOM05D007273 ORTHO05D009230 3.0e-09 67.0 67 52.2
MCO07G627 Micromonas commoda HOM05D007273 ORTHO05D009230 6.6e-09 65.9 99 37.4
TWI39G0907 Tripterygium wilfordii HOM05D007003 ORTHO05D008499 8.7e-09 65.5 293 24.9
Actinidia09327 Actinidia chinensis HOM05D007273 ORTHO05D009230 2.4e-06 57.4 76 42.1
SMO339G0013 Selaginella moellendorffii HOM05D007003 ORTHO05D008499 9.0e-06 55.5 283 24.7


User provided reference genes

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