Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c17_17110 Physcomitrium patens HOM05D007134 ORTHO05D009004 8.4e-162 573.5 274 100.0
Pp3c1_31250 Physcomitrium patens HOM05D007134 ORTHO05D009004 6.3e-93 344.7 268 60.4
Pp3c2_15970 Physcomitrium patens HOM05D007134 ORTHO05D009004 1.8e-71 273.5 260 52.3
Pp3c2_10940 Physcomitrium patens HOM05D007134 ORTHO05D009004 7.5e-70 268.1 263 52.9
AagrBONN_evm.TU.Sc2ySwM_117.2263 Anthoceros agrestis HOM05D007134 ORTHO05D009004 2.7e-59 233.0 273 46.2
Carub.0004s1701 Capsella rubella HOM05D007134 ORTHO05D009004 1.6e-56 223.8 261 43.7
Os06g0110100 Oryza sativa ssp. japonica HOM05D007134 ORTHO05D009004 1.6e-56 223.8 256 41.4
Lj4g0007831 Lotus japonicus HOM05D007134 ORTHO05D009004 3.1e-55 219.5 256 43.8
Hma1.2p1_0991F.1_g244990 Hydrangea macrophylla HOM05D007134 ORTHO05D009004 9.0e-55 218.0 260 44.2
Hma1.2p1_2785F.1_g328490 Hydrangea macrophylla HOM05D007134 ORTHO05D009004 9.0e-55 218.0 260 44.2
TPR.G28658 Trifolium pratense HOM05D007134 ORTHO05D009004 9.0e-55 218.0 264 42.4
Cfa012416 Carpinus fangiana HOM05D007134 ORTHO05D009004 2.0e-54 216.9 250 44.8
Ah.12g054890 Amaranthus hybridus HOM05D007134 ORTHO05D009004 5.8e-54 215.3 259 41.7
CDE12G0960 Ceratophyllum demersum HOM05D007134 ORTHO05D009004 9.9e-54 214.5 251 41.4
ClCG10G001760 Citrullus lanatus HOM05D007134 ORTHO05D009004 9.9e-54 214.5 262 41.6
Gohir.D12G211900 Gossypium hirsutum HOM05D007134 ORTHO05D009004 2.2e-53 213.4 248 42.7
Gorai.008G227500 Gossypium raimondii HOM05D007134 ORTHO05D009004 2.2e-53 213.4 248 42.7
AT2G35320 Arabidopsis thaliana HOM05D007134 ORTHO05D009004 3.8e-53 212.6 267 41.9
AUR62007266 Chenopodium quinoa HOM05D007134 ORTHO05D009004 3.8e-53 212.6 256 42.2
Sp4g17520 Schrenkiella parvula HOM05D007134 ORTHO05D009004 3.8e-53 212.6 259 41.7
CiPaw.11G091800 Carya illinoinensis HOM05D007134 ORTHO05D009004 1.1e-52 211.1 256 42.2
Ca_22068_v3 Cicer arietinum L. HOM05D007134 ORTHO05D009004 1.1e-52 211.1 256 43.8
Actinidia03384 Actinidia chinensis HOM05D007134 ORTHO05D009004 1.4e-52 210.7 259 40.9
TAR629G3531 Trochodendron aralioides HOM05D007134 ORTHO05D009004 1.4e-52 210.7 256 43.0
Phvul.003G230000 Phaseolus vulgaris HOM05D007134 ORTHO05D009004 1.9e-52 210.3 257 40.9
Zm00001eb417090 Zea mays HOM05D007134 ORTHO05D009004 1.9e-52 210.3 259 40.9
MELO3C013860.2 Cucumis melo HOM05D007134 ORTHO05D009004 2.4e-52 209.9 262 40.8
Lalb_Chr05g0220571 Lupinus albus HOM05D007134 ORTHO05D009004 3.2e-52 209.5 256 42.2
GSVIVG01013189001 Vitis vinifera HOM05D007134 ORTHO05D009004 3.2e-52 209.5 257 42.0
AL4G31350 Arabidopsis lyrata HOM05D007134 ORTHO05D009004 4.2e-52 209.1 267 41.2
A03p19520 Brassica napus HOM05D007134 ORTHO05D009004 4.2e-52 209.1 261 41.0
BraA03t11205Z Brassica rapa HOM05D007134 ORTHO05D009004 4.2e-52 209.1 261 41.0
Glyma.17G154600 Glycine max HOM05D007134 ORTHO05D009004 7.1e-52 208.4 261 40.6
MD06G1032400 Malus domestica HOM05D007134 ORTHO05D009004 7.1e-52 208.4 265 40.4
Peaxi162Scf00006g04220 Petunia axillaris HOM05D007134 ORTHO05D009004 7.1e-52 208.4 266 39.8
EL10Ac5g12144 Beta vulgaris HOM05D007134 ORTHO05D009004 9.3e-52 208.0 269 40.9
PGR042G2424 Punica granatum HOM05D007134 ORTHO05D009004 9.3e-52 208.0 264 39.4
ATR0049G037 Amborella trichopoda HOM05D007134 ORTHO05D009004 1.2e-51 207.6 256 42.2
CsaV3_3G001860 Cucumis sativus L. HOM05D007134 ORTHO05D009004 1.2e-51 207.6 248 41.9
Thhalv10016981m.g Eutrema salsugineum HOM05D007134 ORTHO05D009004 1.2e-51 207.6 265 40.4
Psat4g079040 Pisum sativum HOM05D007134 ORTHO05D009004 1.2e-51 207.6 259 43.2
RcHm_v2.0_Chr7g0209231 Rosa chinensis HOM05D007134 ORTHO05D009004 1.6e-51 207.2 267 40.1
CDE04G0512 Ceratophyllum demersum HOM05D007134 ORTHO05D009004 2.1e-51 206.8 254 40.6
Dinv28939 Davidia involucrata HOM05D007134 ORTHO05D009004 2.7e-51 206.5 258 41.9
Glyma.05G112400 Glycine max HOM05D007134 ORTHO05D009004 2.7e-51 206.5 256 40.2
AL457U10010 Arabidopsis lyrata HOM05D007134 ORTHO05D009004 3.5e-51 206.1 267 40.8
CSS0021568 Camellia sinensis var. sinensis HOM05D007134 ORTHO05D009004 3.5e-51 206.1 258 39.9
COL.COLO4_17065 Corchorus olitorius HOM05D007134 ORTHO05D009004 4.6e-51 205.7 258 41.9
Sed0020644 Sechium edule HOM05D007134 ORTHO05D009004 6.0e-51 205.3 264 40.9
Ciclev10032247m.g Citrus clementina HOM05D007134 ORTHO05D009004 7.8e-51 204.9 256 42.2
FvH4_5g21740 Fragaria vesca HOM05D007134 ORTHO05D009004 7.8e-51 204.9 265 39.6
TWI81G0484 Tripterygium wilfordii HOM05D007134 ORTHO05D009004 7.8e-51 204.9 260 39.2
Nitab4.5_0001276g0070 Nicotiana tabacum HOM05D007134 ORTHO05D009004 1.0e-50 204.5 270 39.3
CANSAT21G0276 Cannabis sativa HOM05D007134 ORTHO05D009004 1.3e-50 204.1 260 40.8
Atru.chr6.1744 Acer truncatum HOM05D007134 ORTHO05D009004 1.7e-50 203.8 258 41.9
C03p22750 Brassica napus HOM05D007134 ORTHO05D009004 1.7e-50 203.8 261 40.6
Manes.15G172000 Manihot esculenta HOM05D007134 ORTHO05D009004 2.3e-50 203.4 259 40.2
FAN08G2031 Fragaria x ananassa HOM05D007134 ORTHO05D009004 3.0e-50 203.0 267 40.1
Sc01g0007540 Simmondsia chinensis HOM05D007134 ORTHO05D009004 3.0e-50 203.0 256 40.6
Thecc.03G230400 Theobroma cacao HOM05D007134 ORTHO05D009004 3.0e-50 203.0 248 41.5
CAN.G1659.3 Capsicum annuum HOM05D007134 ORTHO05D009004 5.1e-50 202.2 269 39.4
FAN13G3184 Fragaria x ananassa HOM05D007134 ORTHO05D009004 6.6e-50 201.8 267 40.1
Nitab4.5_0002931g0030 Nicotiana tabacum HOM05D007134 ORTHO05D009004 6.6e-50 201.8 269 39.0
Prupe.5G039700 Prunus persica HOM05D007134 ORTHO05D009004 6.6e-50 201.8 267 40.1
Haze_08260 Corylus avellana HOM05D007134 ORTHO05D009004 1.1e-49 201.1 262 41.2
DCAR_032214 Daucus carota HOM05D007134 ORTHO05D009004 1.1e-49 201.1 256 40.6
Aa31LG9G15330 Aethionema arabicum HOM05D007134 ORTHO05D009004 1.9e-49 200.3 259 40.5
Aqoxy3G02427 Aquilegia oxysepala HOM05D007134 ORTHO05D009004 1.9e-49 200.3 256 40.6
CARHR129460 Cardamine hirsuta HOM05D007134 ORTHO05D009004 4.3e-49 199.1 267 39.3
FAN18G1678 Fragaria x ananassa HOM05D007134 ORTHO05D009004 5.6e-49 198.7 281 38.1
THA.LOC104814437 Tarenaya hassleriana HOM05D007134 ORTHO05D009004 5.6e-49 198.7 267 39.0
arahy.Tifrunner.gnm1.ann1.2XNM6Q Arachis hypogaea HOM05D007134 ORTHO05D009004 7.3e-49 198.4 258 40.3
arahy.Tifrunner.gnm1.ann1.40JZG2 Arachis hypogaea HOM05D007134 ORTHO05D009004 7.3e-49 198.4 260 41.2
Gohir.A12G209200 Gossypium hirsutum HOM05D007134 ORTHO05D009004 7.3e-49 198.4 229 43.2
Lj8A293T18 Lonicera japonica HOM05D007134 ORTHO05D009004 7.3e-49 198.4 256 40.2
PSO782G3567 Papaver somniferum HOM05D007134 ORTHO05D009004 9.6e-49 198.0 266 37.2
Sopen08g025670 Solanum pennellii HOM05D007134 ORTHO05D009004 9.6e-49 198.0 256 39.8
Solyc08g077090.3 Solanum lycopersicum HOM05D007134 ORTHO05D009004 1.6e-48 197.2 256 39.5
BolC3t14673H Brassica oleracea HOM05D007134 ORTHO05D009004 2.1e-48 196.8 261 39.8
Eucgr.E00292 Eucalyptus grandis HOM05D007134 ORTHO05D009004 2.1e-48 196.8 264 37.1
unitig_749.g14086 Utricularia gibba HOM05D007134 ORTHO05D009004 2.1e-48 196.8 256 39.5
Oeu036071.3 Olea europaea HOM05D007134 ORTHO05D009004 2.8e-48 196.4 286 38.8
Potri.001G144000 Populus trichocarpa HOM05D007134 ORTHO05D009004 3.6e-48 196.1 258 38.8
Duzib205G1618 Durio zibethinus HOM05D007134 ORTHO05D009004 6.2e-48 195.3 248 40.7
MSTRG.6669 Avicennia marina HOM05D007134 ORTHO05D009004 1.5e-46 190.7 264 38.3
PGSC0003DMG400017530 Solanum tuberosum HOM05D007134 ORTHO05D009004 1.5e-46 190.7 284 36.6
Cc08_g02480 Coffea canephora HOM05D007134 ORTHO05D009004 4.5e-46 189.1 249 39.0
Migut.M00165 Erythranthe guttata HOM05D007134 ORTHO05D009004 7.6e-46 188.3 237 42.2
Sabra01G0112400 Salix brachista HOM05D007134 ORTHO05D009004 9.9e-46 188.0 287 35.9
Lsat_1_v5_gn_6_64760 Lactuca sativa HOM05D007134 ORTHO05D009004 1.4e-44 184.1 262 38.5
Hund11255 Selenicereus undatus HOM05D007134 ORTHO05D009004 1.4e-44 184.1 277 39.0
HanXRQChr06g0178411 Helianthus annuus HOM05D007134 ORTHO05D009004 6.0e-43 178.7 259 38.2
ECA233G0754 Erigeron canadensis HOM05D007134 ORTHO05D009004 1.3e-42 177.6 263 37.6
SGA_v2.0_scaffold34G13941 Striga asiatica HOM05D007134 ORTHO05D009004 5.1e-42 175.6 244 37.7
SalBow7G1996 Salvia bowleyana HOM05D007134 ORTHO05D009004 5.3e-39 165.6 266 35.3
SalBow7G3039 Salvia bowleyana HOM05D007134 ORTHO05D009004 5.3e-39 165.6 266 35.3
BcaC01g05731 Brassica carinata HOM05D007134 ORTHO05D009004 1.4e-36 157.5 268 34.3
Nn6g33621 Nelumbo nucifera HOM05D007134 ORTHO05D009004 2.4e-36 156.8 256 33.6
AUR62018733 Chenopodium quinoa HOM05D007134 ORTHO05D009004 9.3e-36 154.8 256 33.2
Medtr4g098510 Medicago truncatula HOM05D007134 ORTHO05D009004 1.8e-34 150.6 187 42.2
Rhsim11G0013400 Rhododendron simsii HOM05D007134 ORTHO05D009004 3.3e-33 146.4 372 28.2
FAN04G0135 Fragaria x ananassa HOM05D007134 ORTHO05D009004 3.7e-32 142.9 267 31.1
PSO063G6706 Papaver somniferum HOM05D007134 ORTHO05D009004 8.2e-32 141.7 266 29.7
VMungo0251G0669 Vigna mungo HOM05D007134 ORTHO05D009004 4.5e-30 136.0 179 39.1
vmacro00339 Vaccinium macrocarpon HOM05D007134 ORTHO05D009004 8.4e-29 131.7 389 26.5
QL12p006104 Quercus lobata HOM05D007134 ORTHO05D009004 3.4e-22 109.8 136 40.4
VMungo0251G0585 Vigna mungo HOM05D007134 ORTHO05D009004 2.6e-14 83.6 77 49.4
SEGI_12545 Sequoiadendron giganteum HOM05D007134 ORTHO05D009004 1.6e-11 74.3 77 44.2
Cpa.g.sc71.65 Carica papaya HOM05D007134 ORTHO05D009004 2.6e-09 67.0 79 38.0


User provided reference genes

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