Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c17_16830 Physcomitrium patens HOM05D007351 ORTHO05D009386 5.6e-135 484.2 231 100.0
Mapoly0036s0071 Marchantia polymorpha HOM05D007351 ORTHO05D009386 4.1e-69 265.4 172 72.1
SEGI_27006 Sequoiadendron giganteum HOM05D007351 ORTHO05D009386 7.5e-63 244.6 203 57.6
AagrBONN_evm.TU.Sc2ySwM_228.1243 Anthoceros agrestis HOM05D007351 ORTHO05D009386 1.3e-62 243.8 150 72.7
PSO170G0157 Papaver somniferum HOM05D007351 ORTHO05D009386 3.2e-61 239.2 197 57.9
AT2G25605 Arabidopsis thaliana HOM05D007351 ORTHO05D009386 9.2e-61 237.7 177 64.4
PSO017G1621 Papaver somniferum HOM05D007351 ORTHO05D009386 1.6e-60 236.9 173 62.4
MBI04_g00950_MAGBIO Magnolia biondii HOM05D007351 ORTHO05D009386 2.7e-60 236.1 194 58.2
CARHR115710 Cardamine hirsuta HOM05D007351 ORTHO05D009386 3.5e-60 235.7 171 66.1
Sc06g0000580 Simmondsia chinensis HOM05D007351 ORTHO05D009386 6.0e-60 235.0 166 65.7
Thecc.09G147600 Theobroma cacao HOM05D007351 ORTHO05D009386 7.8e-60 234.6 171 63.7
MSTRG.11754 Avicennia marina HOM05D007351 ORTHO05D009386 1.0e-59 234.2 167 65.3
EL10Ac2g02569 Beta vulgaris HOM05D007351 ORTHO05D009386 1.0e-59 234.2 174 62.1
BcaC02g08337 Brassica carinata HOM05D007351 ORTHO05D009386 1.0e-59 234.2 177 63.8
A04p19820 Brassica napus HOM05D007351 ORTHO05D009386 1.0e-59 234.2 177 63.8
C04p55560 Brassica napus HOM05D007351 ORTHO05D009386 1.0e-59 234.2 177 63.8
BolC4t27080H Brassica oleracea HOM05D007351 ORTHO05D009386 1.0e-59 234.2 177 63.8
BraA04t17570Z Brassica rapa HOM05D007351 ORTHO05D009386 1.0e-59 234.2 177 63.8
Gorai.004G110800 Gossypium raimondii HOM05D007351 ORTHO05D009386 1.3e-59 233.8 169 63.3
ATR0680G179 Amborella trichopoda HOM05D007351 ORTHO05D009386 1.7e-59 233.4 162 67.3
Migut.A00300 Erythranthe guttata HOM05D007351 ORTHO05D009386 1.7e-59 233.4 167 64.1
BcaB06g28079 Brassica carinata HOM05D007351 ORTHO05D009386 2.3e-59 233.0 175 64.0
COL.COLO4_24001 Corchorus olitorius HOM05D007351 ORTHO05D009386 2.3e-59 233.0 202 55.9
Thhalv10000330m.g Eutrema salsugineum HOM05D007351 ORTHO05D009386 3.0e-59 232.6 166 65.7
Carub.0004s0533 Capsella rubella HOM05D007351 ORTHO05D009386 3.9e-59 232.3 202 58.4
Atru.chr7.2359 Acer truncatum HOM05D007351 ORTHO05D009386 6.6e-59 231.5 202 55.4
Eucgr.C01805 Eucalyptus grandis HOM05D007351 ORTHO05D009386 6.6e-59 231.5 167 65.3
TWI34G1290 Tripterygium wilfordii HOM05D007351 ORTHO05D009386 8.6e-59 231.1 168 63.7
Sed0005695 Sechium edule HOM05D007351 ORTHO05D009386 1.1e-58 230.7 193 57.0
MD08G1141900 Malus domestica HOM05D007351 ORTHO05D009386 1.5e-58 230.3 202 55.9
Nn2g11909 Nelumbo nucifera HOM05D007351 ORTHO05D009386 1.5e-58 230.3 166 63.3
Peaxi162Scf00251g01128 Petunia axillaris HOM05D007351 ORTHO05D009386 1.5e-58 230.3 188 58.0
GSVIVG01035772001 Vitis vinifera HOM05D007351 ORTHO05D009386 1.5e-58 230.3 168 64.3
CiPaw.08G014100 Carya illinoinensis HOM05D007351 ORTHO05D009386 1.9e-58 229.9 198 56.6
ECA233G0102 Erigeron canadensis HOM05D007351 ORTHO05D009386 1.9e-58 229.9 193 57.5
Potri.006G249000 Populus trichocarpa HOM05D007351 ORTHO05D009386 1.9e-58 229.9 198 57.1
Prupe.1G471900 Prunus persica HOM05D007351 ORTHO05D009386 1.9e-58 229.9 166 63.9
Sabra06G0194800 Salix brachista HOM05D007351 ORTHO05D009386 2.5e-58 229.6 166 63.9
Aa31sc586G10 Aethionema arabicum HOM05D007351 ORTHO05D009386 3.3e-58 229.2 171 63.7
AL4G17070 Arabidopsis lyrata HOM05D007351 ORTHO05D009386 3.3e-58 229.2 168 64.3
CSS0046405 Camellia sinensis var. sinensis HOM05D007351 ORTHO05D009386 3.3e-58 229.2 166 63.9
Gohir.A08G090000 Gossypium hirsutum HOM05D007351 ORTHO05D009386 3.3e-58 229.2 165 63.6
Lj8A616G46 Lonicera japonica HOM05D007351 ORTHO05D009386 3.3e-58 229.2 166 64.5
AUR62032351 Chenopodium quinoa HOM05D007351 ORTHO05D009386 4.3e-58 228.8 213 54.0
Lsat_1_v5_gn_6_21681 Lactuca sativa HOM05D007351 ORTHO05D009386 4.3e-58 228.8 166 63.3
TAR625G1337 Trochodendron aralioides HOM05D007351 ORTHO05D009386 4.3e-58 228.8 166 62.7
Lalb_Chr23g0268831 Lupinus albus HOM05D007351 ORTHO05D009386 5.6e-58 228.4 190 59.5
RcHm_v2.0_Chr6g0298791 Rosa chinensis HOM05D007351 ORTHO05D009386 5.6e-58 228.4 211 54.5
MELO3C003678.2 Cucumis melo HOM05D007351 ORTHO05D009386 7.3e-58 228.0 165 63.6
Glyma.06G071600 Glycine max HOM05D007351 ORTHO05D009386 7.3e-58 228.0 173 61.8
Manes.16G118400 Manihot esculenta HOM05D007351 ORTHO05D009386 9.5e-58 227.6 206 52.9
PGSC0003DMG400007382 Solanum tuberosum HOM05D007351 ORTHO05D009386 1.6e-57 226.9 168 62.5
Hund03010 Selenicereus undatus HOM05D007351 ORTHO05D009386 2.1e-57 226.5 166 62.7
Actinidia15698 Actinidia chinensis HOM05D007351 ORTHO05D009386 2.8e-57 226.1 166 62.7
Phvul.009G096100 Phaseolus vulgaris HOM05D007351 ORTHO05D009386 2.8e-57 226.1 166 63.3
arahy.Tifrunner.gnm1.ann1.C4YKET Arachis hypogaea HOM05D007351 ORTHO05D009386 3.6e-57 225.7 192 57.3
Ca_15711_v3 Cicer arietinum L. HOM05D007351 ORTHO05D009386 3.6e-57 225.7 182 58.8
FvH4_2g29770 Fragaria vesca HOM05D007351 ORTHO05D009386 4.7e-57 225.3 166 62.7
FAN24G0983 Fragaria x ananassa HOM05D007351 ORTHO05D009386 4.7e-57 225.3 166 62.7
FAN27G2935 Fragaria x ananassa HOM05D007351 ORTHO05D009386 4.7e-57 225.3 166 62.7
Solyc08g067430.4 Solanum lycopersicum HOM05D007351 ORTHO05D009386 4.7e-57 225.3 168 61.9
THA.LOC104804500 Tarenaya hassleriana HOM05D007351 ORTHO05D009386 4.7e-57 225.3 171 62.0
Hma1.2p1_0000F.1_g000940 Hydrangea macrophylla HOM05D007351 ORTHO05D009386 6.2e-57 224.9 166 62.7
Cc11_g01660 Coffea canephora HOM05D007351 ORTHO05D009386 8.1e-57 224.6 168 61.3
Psat5g027160 Pisum sativum HOM05D007351 ORTHO05D009386 8.1e-57 224.6 173 61.3
HanXRQChr13g0402411 Helianthus annuus HOM05D007351 ORTHO05D009386 1.1e-56 224.2 166 62.0
FAN15G3188 Fragaria x ananassa HOM05D007351 ORTHO05D009386 1.4e-56 223.8 166 62.7
unitig_32.g11667 Utricularia gibba HOM05D007351 ORTHO05D009386 1.4e-56 223.8 178 62.9
Medtr3g107860 Medicago truncatula HOM05D007351 ORTHO05D009386 1.8e-56 223.4 173 60.1
SGA_v2.0_scaffold448G51771 Striga asiatica HOM05D007351 ORTHO05D009386 2.3e-56 223.0 171 60.8
TPR.G27335 Trifolium pratense HOM05D007351 ORTHO05D009386 3.1e-56 222.6 178 59.6
Cpa.g.sc91.32 Carica papaya HOM05D007351 ORTHO05D009386 4.0e-56 222.2 209 54.1
Nitab4.5_0000508g0220 Nicotiana tabacum HOM05D007351 ORTHO05D009386 4.0e-56 222.2 168 60.1
CDE06G1133 Ceratophyllum demersum HOM05D007351 ORTHO05D009386 5.2e-56 221.9 189 57.1
SMO269G0024 Selaginella moellendorffii HOM05D007351 ORTHO05D009386 5.2e-56 221.9 163 65.0
Ciclev10009550m.g Citrus clementina HOM05D007351 ORTHO05D009386 6.8e-56 221.5 167 62.9
Lj1g0014043 Lotus japonicus HOM05D007351 ORTHO05D009386 6.8e-56 221.5 167 62.3
Glyma.04G069700 Glycine max HOM05D007351 ORTHO05D009386 1.5e-55 220.3 196 55.6
Os05g0574700 Oryza sativa ssp. japonica HOM05D007351 ORTHO05D009386 2.9e-54 216.1 168 60.7
Sopen08g021360 Solanum pennellii HOM05D007351 ORTHO05D009386 3.7e-54 215.7 168 60.1
arahy.Tifrunner.gnm1.ann1.8MNE4Q Arachis hypogaea HOM05D007351 ORTHO05D009386 6.4e-54 214.9 213 51.6
AUR62041846 Chenopodium quinoa HOM05D007351 ORTHO05D009386 1.1e-53 214.2 161 63.4
Aqoxy7G02003 Aquilegia oxysepala HOM05D007351 ORTHO05D009386 1.4e-53 213.8 200 53.0
Rhsim07G0150700 Rhododendron simsii HOM05D007351 ORTHO05D009386 1.4e-53 213.8 184 56.5
Nitab4.5_0002339g0070 Nicotiana tabacum HOM05D007351 ORTHO05D009386 5.4e-53 211.8 171 58.5
vmacro05202 Vaccinium macrocarpon HOM05D007351 ORTHO05D009386 5.4e-53 211.8 147 65.3
Sp4g05090 Schrenkiella parvula HOM05D007351 ORTHO05D009386 9.2e-53 211.1 140 71.4
VMungo1309G2796 Vigna mungo HOM05D007351 ORTHO05D009386 2.3e-51 206.5 177 58.8
CsaV3_3G046600 Cucumis sativus L. HOM05D007351 ORTHO05D009386 5.6e-50 201.8 138 65.9
CBR_g40414 Chara braunii HOM05D007351 ORTHO05D009386 3.1e-48 196.1 210 47.1
Gohir.D08G102800 Gossypium hirsutum HOM05D007351 ORTHO05D009386 4.2e-45 185.7 144 61.1
Duzib150G1343 Durio zibethinus HOM05D007351 ORTHO05D009386 1.6e-44 183.7 138 62.3
QL12p031742 Quercus lobata HOM05D007351 ORTHO05D009386 1.6e-44 183.7 137 63.5
Haze_21592 Corylus avellana HOM05D007351 ORTHO05D009386 2.7e-44 183.0 111 74.8
Zm00001eb344390 Zea mays HOM05D007351 ORTHO05D009386 3.5e-44 182.6 138 62.3
PGR031G1798 Punica granatum HOM05D007351 ORTHO05D009386 7.8e-44 181.4 152 57.2
DCAR_003046 Daucus carota HOM05D007351 ORTHO05D009386 2.5e-42 176.4 143 59.4
Oeu045191.1 Olea europaea HOM05D007351 ORTHO05D009386 5.3e-40 168.7 147 56.5
CANSAT11G2455 Cannabis sativa HOM05D007351 ORTHO05D009386 3.8e-38 162.5 221 40.7
Cre17.g746897 Chlamydomonas reinhardtii HOM05D007351 ORTHO05D009386 4.8e-33 145.6 141 49.6
CANSAT54G2502 Cannabis sativa HOM05D007351 ORTHO05D009386 6.9e-24 115.2 192 36.5
Pp3c16_22900 Physcomitrium patens HOM05D033550 ORTHO05D017832 4.1e-08 62.8 134 30.6
Cre16.g683300 Chlamydomonas reinhardtii HOM05D027270 ORTHO05D017832 2.6e-07 60.1 150 30.7
SEGI_25541 Sequoiadendron giganteum HOM05D007351 ORTHO05D017832 4.5e-07 59.3 139 30.9
Lsat_1_v5_gn_4_127141 Lactuca sativa HOM05D007351 ORTHO05D009386 5.9e-07 58.9 36 66.7
SMO356G0529 Selaginella moellendorffii HOM05D017363 ORTHO05D018319 2.2e-06 57.0 131 27.5


User provided reference genes

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