Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c17_16180 Physcomitrium patens HOM05D005577 ORTHO05D006941 3.8e-271 937.6 467 100.0
Mapoly0051s0085 Marchantia polymorpha HOM05D005577 ORTHO05D006941 6.9e-164 581.3 445 65.4
AagrBONN_evm.TU.Sc2ySwM_362.1325 Anthoceros agrestis HOM05D005577 ORTHO05D006941 1.1e-158 563.9 436 63.1
SEGI_29210 Sequoiadendron giganteum HOM05D005577 ORTHO05D006941 4.5e-155 552.0 440 60.0
CBR_g45479 Chara braunii HOM05D005577 ORTHO05D006941 6.0e-152 541.6 435 61.1
ATR0561G025 Amborella trichopoda HOM05D005577 ORTHO05D006941 6.7e-151 538.1 431 59.4
Sc11g0000360 Simmondsia chinensis HOM05D005577 ORTHO05D006941 6.7e-151 538.1 429 61.1
SMO340G0130 Selaginella moellendorffii HOM05D005577 ORTHO05D006941 8.7e-151 537.7 455 58.0
Glyma.05G148900 Glycine max HOM05D005577 ORTHO05D006941 1.9e-150 536.6 436 59.4
Cfa009383 Carpinus fangiana HOM05D005577 ORTHO05D006941 4.3e-150 535.4 431 59.4
Os07g0406800 Oryza sativa ssp. japonica HOM05D005577 ORTHO05D006941 4.3e-150 535.4 451 57.0
Hund25478 Selenicereus undatus HOM05D005577 ORTHO05D006941 4.3e-150 535.4 430 59.1
Eucgr.H04616 Eucalyptus grandis HOM05D005577 ORTHO05D006941 5.6e-150 535.0 444 58.8
Thecc.02G202700 Theobroma cacao HOM05D005577 ORTHO05D006941 2.1e-149 533.1 439 58.3
Duzib248G1391 Durio zibethinus HOM05D005577 ORTHO05D006941 6.2e-149 531.6 436 58.3
Gorai.005G164500 Gossypium raimondii HOM05D005577 ORTHO05D006941 6.2e-149 531.6 436 58.7
Gohir.A03G117000 Gossypium hirsutum HOM05D005577 ORTHO05D006941 8.1e-149 531.2 436 58.3
Gohir.D02G146900 Gossypium hirsutum HOM05D005577 ORTHO05D006941 1.4e-148 530.4 436 58.5
Sopen04g017360 Solanum pennellii HOM05D005577 ORTHO05D006941 1.8e-148 530.0 443 56.9
CANSAT01G0699 Cannabis sativa HOM05D005577 ORTHO05D006941 3.1e-148 529.3 436 58.9
Haze_12444 Corylus avellana HOM05D005577 ORTHO05D006941 3.1e-148 529.3 459 55.8
CiPaw.06G104800 Carya illinoinensis HOM05D005577 ORTHO05D006941 5.3e-148 528.5 431 58.7
TAR629G1549 Trochodendron aralioides HOM05D005577 ORTHO05D006941 1.2e-147 527.3 427 58.8
Cc11_g17150 Coffea canephora HOM05D005577 ORTHO05D006941 2.6e-147 526.2 432 58.8
Nitab4.5_0001010g0020 Nicotiana tabacum HOM05D005577 ORTHO05D006941 2.6e-147 526.2 429 58.5
Glyma.08G105600 Glycine max HOM05D005577 ORTHO05D006941 5.8e-147 525.0 436 58.3
Manes.12G008900 Manihot esculenta HOM05D005577 ORTHO05D006941 5.8e-147 525.0 440 57.5
HPP92_020263 Vanilla planifolia HOM05D005577 ORTHO05D006941 7.6e-147 524.6 430 58.8
FAN12G2046 Fragaria x ananassa HOM05D005577 ORTHO05D006941 1.0e-146 524.2 427 58.1
Zm00001eb421110 Zea mays HOM05D005577 ORTHO05D006941 1.3e-146 523.9 458 56.3
Ciclev10031511m.g Citrus clementina HOM05D005577 ORTHO05D006941 1.7e-146 523.5 433 58.7
Migut.K00987 Erythranthe guttata HOM05D005577 ORTHO05D006941 1.7e-146 523.5 429 58.3
SalBow2G2693 Salvia bowleyana HOM05D005577 ORTHO05D006941 1.7e-146 523.5 439 56.7
GSVIVG01029087001 Vitis vinifera HOM05D005577 ORTHO05D006941 1.7e-146 523.5 435 57.9
FAN07G0551 Fragaria x ananassa HOM05D005577 ORTHO05D006941 6.5e-146 521.5 441 56.7
Nn3g16413 Nelumbo nucifera HOM05D005577 ORTHO05D006941 6.5e-146 521.5 432 57.9
MSTRG.487 Avicennia marina HOM05D005577 ORTHO05D006941 1.1e-145 520.8 429 57.6
Manes.13G009300 Manihot esculenta HOM05D005577 ORTHO05D006941 1.1e-145 520.8 440 57.3
EL10Ac6g13532 Beta vulgaris HOM05D005577 ORTHO05D006941 1.4e-145 520.4 431 57.8
Lalb_Chr07g0187001 Lupinus albus HOM05D005577 ORTHO05D006941 1.4e-145 520.4 434 56.9
Thhalv10018528m.g Eutrema salsugineum HOM05D005577 ORTHO05D006941 2.5e-145 519.6 435 57.2
Medtr8g097160 Medicago truncatula HOM05D005577 ORTHO05D006941 2.5e-145 519.6 434 56.7
Sp5g22260 Schrenkiella parvula HOM05D005577 ORTHO05D006941 3.2e-145 519.2 434 56.7
Nitab4.5_0008235g0010 Nicotiana tabacum HOM05D005577 ORTHO05D006941 5.5e-145 518.5 429 57.8
MD13G1121900 Malus domestica HOM05D005577 ORTHO05D006941 7.1e-145 518.1 432 56.2
Phvul.L003546 Phaseolus vulgaris HOM05D005577 ORTHO05D006941 7.1e-145 518.1 434 56.2
Potri.003G169300 Populus trichocarpa HOM05D005577 ORTHO05D006941 7.1e-145 518.1 439 56.9
FAN22G0128 Fragaria x ananassa HOM05D005577 ORTHO05D006941 9.3e-145 517.7 441 56.2
BcaB03g15345 Brassica carinata HOM05D005577 ORTHO05D006941 1.6e-144 516.9 436 56.7
Lj6A829T30 Lonicera japonica HOM05D005577 ORTHO05D006941 2.1e-144 516.5 463 54.9
RcHm_v2.0_Chr4g0418271 Rosa chinensis HOM05D005577 ORTHO05D006941 3.5e-144 515.8 441 56.0
TWI36G1278 Tripterygium wilfordii HOM05D005577 ORTHO05D006941 3.5e-144 515.8 431 56.6
C02p22860 Brassica napus HOM05D005577 ORTHO05D006941 4.6e-144 515.4 434 55.8
Ca_18016_v3 Cicer arietinum L. HOM05D005577 ORTHO05D006941 4.6e-144 515.4 433 56.8
Dinv11687 Davidia involucrata HOM05D005577 ORTHO05D006941 4.6e-144 515.4 414 59.9
Peaxi162Scf00128g01539 Petunia axillaris HOM05D005577 ORTHO05D006941 4.6e-144 515.4 431 56.8
THA.LOC104807138 Tarenaya hassleriana HOM05D005577 ORTHO05D006941 4.6e-144 515.4 433 58.2
A02p14150 Brassica napus HOM05D005577 ORTHO05D006941 6.0e-144 515.0 434 55.8
ECA233G0246 Erigeron canadensis HOM05D005577 ORTHO05D006941 7.9e-144 514.6 434 56.0
TWI75G1135 Tripterygium wilfordii HOM05D005577 ORTHO05D006941 2.3e-143 513.1 431 57.8
TPR.G26572 Trifolium pratense HOM05D005577 ORTHO05D006941 6.7e-143 511.5 434 56.2
CSS0033060 Camellia sinensis var. sinensis HOM05D005577 ORTHO05D006941 1.1e-142 510.8 427 58.3
BraA07t30887Z Brassica rapa HOM05D005577 ORTHO05D006941 1.5e-142 510.4 454 54.8
HanXRQChr12g0354651 Helianthus annuus HOM05D005577 ORTHO05D006941 1.9e-142 510.0 442 55.7
arahy.Tifrunner.gnm1.ann1.HTD3J8 Arachis hypogaea HOM05D005577 ORTHO05D006941 2.5e-142 509.6 455 54.5
CSS0039862 Camellia sinensis var. sinensis HOM05D005577 ORTHO05D006941 2.5e-142 509.6 429 57.3
Rhsim12G0094300 Rhododendron simsii HOM05D005577 ORTHO05D006941 2.5e-142 509.6 428 57.5
Solyc04g045530.4 Solanum lycopersicum HOM05D005577 ORTHO05D006941 2.5e-142 509.6 414 58.2
THA.LOC104825491 Tarenaya hassleriana HOM05D005577 ORTHO05D006941 2.5e-142 509.6 432 58.8
arahy.Tifrunner.gnm1.ann1.V9CB21 Arachis hypogaea HOM05D005577 ORTHO05D006941 5.7e-142 508.4 459 53.6
A07p32630 Brassica napus HOM05D005577 ORTHO05D006941 5.7e-142 508.4 446 54.9
BolC2t08435H Brassica oleracea HOM05D005577 ORTHO05D006941 9.6e-142 507.7 453 53.9
QL03p051875 Quercus lobata HOM05D005577 ORTHO05D006941 9.6e-142 507.7 440 56.6
DCAR_024669 Daucus carota HOM05D005577 ORTHO05D006941 1.3e-141 507.3 465 52.7
Aqoxy5G03309 Aquilegia oxysepala HOM05D005577 ORTHO05D006941 1.6e-141 506.9 432 56.5
CARHR059800 Cardamine hirsuta HOM05D005577 ORTHO05D006941 2.8e-141 506.1 434 55.8
CsaV3_6G008170 Cucumis sativus L. HOM05D005577 ORTHO05D006941 3.7e-141 505.8 432 56.7
AT1G67320 Arabidopsis thaliana HOM05D005577 ORTHO05D006941 4.8e-141 505.4 431 56.8
AL2G25840 Arabidopsis lyrata HOM05D005577 ORTHO05D006941 1.4e-140 503.8 431 56.6
Carub.0002s1360 Capsella rubella HOM05D005577 ORTHO05D006941 1.4e-140 503.8 431 56.4
Sed0021319 Sechium edule HOM05D005577 ORTHO05D006941 1.4e-140 503.8 436 56.9
HanXRQChr12g0357271 Helianthus annuus HOM05D005577 ORTHO05D006941 3.1e-140 502.7 442 54.8
BraA02t06478Z Brassica rapa HOM05D005577 ORTHO05D006941 4.1e-140 502.3 462 52.4
CDE05G3041 Ceratophyllum demersum HOM05D005577 ORTHO05D006941 1.2e-139 500.7 438 54.1
Lsat_1_v5_gn_2_63520 Lactuca sativa HOM05D005577 ORTHO05D006941 1.2e-139 500.7 433 55.7
Lj4g0002319 Lotus japonicus HOM05D005577 ORTHO05D006941 4.5e-139 498.8 434 55.3
COL.COLO4_20442 Corchorus olitorius HOM05D005577 ORTHO05D006941 1.3e-138 497.3 436 56.9
Oeu058914.1 Olea europaea HOM05D005577 ORTHO05D006941 1.3e-138 497.3 451 53.2
PSO017G5787 Papaver somniferum HOM05D005577 ORTHO05D006941 2.9e-138 496.1 438 54.6
Ah.03g135990 Amaranthus hybridus HOM05D005577 ORTHO05D006941 6.7e-135 485.0 432 55.8
Hma1.2p1_0065F.1_g035160 Hydrangea macrophylla HOM05D005577 ORTHO05D006941 1.9e-134 483.4 429 55.2
Zm00001eb407100 Zea mays HOM05D005577 ORTHO05D006941 1.6e-133 480.3 398 58.8
Prupe.1G223400 Prunus persica HOM05D005577 ORTHO05D006941 8.2e-133 478.0 436 54.8
CAN.G97.33 Capsicum annuum HOM05D005577 ORTHO05D006941 2.4e-132 476.5 443 54.0
BcaC03g14832 Brassica carinata HOM05D005577 ORTHO05D006941 6.9e-132 474.9 394 55.8
MELO3C022319.2 Cucumis melo HOM05D005577 ORTHO05D006941 2.2e-130 469.9 392 57.7
unitig_699.g19962 Utricularia gibba HOM05D005577 ORTHO05D006941 7.2e-129 464.9 466 50.6
Sabra03G0124100 Salix brachista HOM05D005577 ORTHO05D006941 9.4e-129 464.5 464 50.9
SGA_v2.0_scaffold114G31915 Striga asiatica HOM05D005577 ORTHO05D006941 1.2e-128 464.2 450 51.3
ClCG06G002100 Citrullus lanatus HOM05D005577 ORTHO05D006941 2.7e-128 463.0 442 53.2
Aa31LG2G15630 Aethionema arabicum HOM05D005577 ORTHO05D006941 4.3e-126 455.7 442 52.0
FvH4_4g14550 Fragaria vesca HOM05D005577 ORTHO05D006941 4.8e-125 452.2 359 58.8
vmacro17973 Vaccinium macrocarpon HOM05D005577 ORTHO05D006941 1.4e-124 450.7 492 49.2
Actinidia09628 Actinidia chinensis HOM05D005577 ORTHO05D006941 4.1e-124 449.1 386 56.5
QL02p017501 Quercus lobata HOM05D005577 ORTHO05D006941 5.0e-122 442.2 412 53.6
AUR62005646 Chenopodium quinoa HOM05D005577 ORTHO05D006941 1.1e-113 414.5 431 48.3
MCO02G430 Micromonas commoda HOM05D005577 ORTHO05D006941 2.5e-113 413.3 434 46.1
Cpa.g.sc43.82 Carica papaya HOM05D005577 ORTHO05D006941 2.7e-112 409.8 431 49.0
PRCOL_00003669 Prasinoderma coloniale HOM05D005577 ORTHO05D006941 6.1e-112 408.7 440 49.1
AUR62028904 Chenopodium quinoa HOM05D005577 ORTHO05D006941 8.0e-112 408.3 442 47.5
Hma1.2p1_0065F.1_g035170 Hydrangea macrophylla HOM05D005577 ORTHO05D006941 4.5e-107 392.5 321 58.3
BcaB05g24262 Brassica carinata HOM05D005577 ORTHO05D006941 3.2e-97 359.8 433 45.3
Psat7g076760 Pisum sativum HOM05D005577 ORTHO05D006941 1.6e-96 357.5 278 60.1
Cre06.g293000 Chlamydomonas reinhardtii HOM05D005577 ORTHO05D006941 1.2e-88 331.3 488 38.9
MD09G1083700 Malus domestica HOM05D005577 ORTHO05D006941 2.3e-79 300.4 304 50.3
TAR371G1028 Trochodendron aralioides HOM05D005577 ORTHO05D006941 1.0e-66 258.5 427 37.2
QL03p057485 Quercus lobata HOM05D005577 ORTHO05D006941 5.1e-66 256.1 374 40.4
Aqoxy7G01339 Aquilegia oxysepala HOM05D005577 ORTHO05D006941 3.3e-65 253.4 181 63.5
Atru.chr11.2352 Acer truncatum HOM05D005577 ORTHO05D006941 1.7e-45 188.0 108 75.9
Psat7g076800 Pisum sativum HOM05D005577 ORTHO05D006941 9.3e-36 155.6 157 49.7
MD16G1122200 Malus domestica HOM05D005577 ORTHO05D006941 1.6e-35 154.8 335 29.9
RcHm_v2.0_Chr4g0417261 Rosa chinensis HOM05D005577 ORTHO05D006941 2.3e-34 151.0 370 31.6
RcHm_v2.0_Chr4g0417231 Rosa chinensis HOM05D005577 ORTHO05D006941 1.0e-26 125.6 139 48.2
Atru.chr11.2353 Acer truncatum HOM05D005577 ORTHO05D006941 3.9e-26 123.6 119 52.1
Atru.chr11.2354 Acer truncatum HOM05D005577 ORTHO05D006941 5.1e-26 123.2 108 56.5
Dinv17584 Davidia involucrata HOM05D005577 ORTHO05D006941 6.9e-23 112.8 83 57.8
Potri.017G053801 Populus trichocarpa HOM05D005577 ORTHO05D006941 4.6e-19 100.1 50 80.0
MCO16G135 Micromonas commoda HOM05D005577 ORTHO05D267611 1.8e-18 98.2 221 29.9
SHI17980 Sapria himalayana HOM05D005577 ORTHO05D006941 3.0e-18 97.4 83 49.4
Lsat_1_v5_gn_0_16180 Lactuca sativa HOM05D005577 ORTHO05D006941 8.7e-18 95.9 143 40.6
SHI17983 Sapria himalayana HOM05D005577 ORTHO05D006941 2.8e-16 90.9 88 50.0
SHI17982 Sapria himalayana HOM05D005577 ORTHO05D006941 4.6e-11 73.6 65 53.8
A10p10750 Brassica napus HOM05D005577 ORTHO05D006941 8.8e-10 69.3 66 48.5
SHI17981 Sapria himalayana HOM05D005577 ORTHO05D006941 3.7e-08 63.9 53 54.7
MD16G1122100 Malus domestica HOM05D005577 ORTHO05D006941 6.3e-08 63.2 77 41.6
RcHm_v2.0_Chr4g0417241 Rosa chinensis HOM05D005577 ORTHO05D006941 1.8e-07 61.6 66 50.0
QL10p065845 Quercus lobata HOM05D000176 ORTHO05D000106 4.1e-07 60.5 106 38.7


User provided reference genes

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