Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c17_14810 Physcomitrium patens HOM05D005440 ORTHO05D007314 0.0e+00 1105.1 535 100.0
Pp3c1_31970 Physcomitrium patens HOM05D005440 ORTHO05D007314 6.2e-201 704.5 525 68.0
SEGI_34757 Sequoiadendron giganteum HOM05D005440 ORTHO05D007314 1.4e-149 533.9 554 51.8
AT2G32170 Arabidopsis thaliana HOM05D005440 ORTHO05D007314 5.7e-146 521.9 513 53.2
TAR627G1033 Trochodendron aralioides HOM05D005440 ORTHO05D007314 5.7e-146 521.9 508 54.9
Nn5g27478 Nelumbo nucifera HOM05D005440 ORTHO05D007314 1.6e-145 520.4 519 52.8
Potri.016G021900 Populus trichocarpa HOM05D005440 ORTHO05D007314 3.7e-145 519.2 506 54.7
PGR004G2684 Punica granatum HOM05D005440 ORTHO05D007314 4.8e-145 518.8 524 51.9
Sc15g0002420 Simmondsia chinensis HOM05D005440 ORTHO05D007314 1.4e-144 517.3 510 55.1
Carub.0004s1349 Capsella rubella HOM05D005440 ORTHO05D007314 1.8e-144 516.9 508 52.6
A04p24740 Brassica napus HOM05D005440 ORTHO05D007314 4.1e-144 515.8 509 52.3
Ciclev10011552m.g Citrus clementina HOM05D005440 ORTHO05D007314 4.1e-144 515.8 513 53.8
BcaC02g07946 Brassica carinata HOM05D005440 ORTHO05D007314 5.3e-144 515.4 506 52.8
BolC4t27650H Brassica oleracea HOM05D005440 ORTHO05D007314 5.3e-144 515.4 506 52.8
AL4G27520 Arabidopsis lyrata HOM05D005440 ORTHO05D007314 1.2e-143 514.2 514 52.5
Lalb_Chr22g0360841 Lupinus albus HOM05D005440 ORTHO05D007314 1.5e-143 513.8 506 54.7
CAN.G1156.52 Capsicum annuum HOM05D005440 ORTHO05D007314 2.6e-143 513.1 505 53.7
CsaV3_4G032220 Cucumis sativus L. HOM05D005440 ORTHO05D007314 3.4e-143 512.7 510 53.7
Potri.006G023400 Populus trichocarpa HOM05D005440 ORTHO05D007314 4.5e-143 512.3 533 52.9
TPR.G33572 Trifolium pratense HOM05D005440 ORTHO05D007314 4.5e-143 512.3 526 52.9
MELO3C026396.2 Cucumis melo HOM05D005440 ORTHO05D007314 7.6e-143 511.5 508 54.1
Lalb_Chr24g0402811 Lupinus albus HOM05D005440 ORTHO05D007314 1.0e-142 511.1 511 53.2
Mapoly0014s0077 Marchantia polymorpha HOM05D005440 ORTHO05D007314 1.3e-142 510.8 556 51.4
GSVIVG01026115001 Vitis vinifera HOM05D005440 ORTHO05D007314 1.3e-142 510.8 510 53.9
Solyc05g056520.4 Solanum lycopersicum HOM05D005440 ORTHO05D007314 1.7e-142 510.4 509 51.7
Sopen05g034920 Solanum pennellii HOM05D005440 ORTHO05D007314 1.7e-142 510.4 509 51.7
Glyma.20G065600 Glycine max HOM05D005440 ORTHO05D007314 3.8e-142 509.2 531 52.4
THA.LOC104826162 Tarenaya hassleriana HOM05D005440 ORTHO05D007314 5.0e-142 508.8 509 51.5
Gorai.001G092600 Gossypium raimondii HOM05D005440 ORTHO05D007314 1.4e-141 507.3 506 53.0
Glyma.13G003900 Glycine max HOM05D005440 ORTHO05D007314 2.5e-141 506.5 519 53.0
Ca_16308_v3 Cicer arietinum L. HOM05D005440 ORTHO05D007314 3.2e-141 506.1 521 52.6
Phvul.006G001800 Phaseolus vulgaris HOM05D005440 ORTHO05D007314 4.2e-141 505.8 511 53.0
Hma1.2p1_1803F.1_g302990 Hydrangea macrophylla HOM05D005440 ORTHO05D007314 5.5e-141 505.4 514 52.3
BcaB06g28584 Brassica carinata HOM05D005440 ORTHO05D007314 7.2e-141 505.0 506 53.4
Duzib138G1709 Durio zibethinus HOM05D005440 ORTHO05D007314 7.2e-141 505.0 507 53.3
Medtr3g081180 Medicago truncatula HOM05D005440 ORTHO05D007314 7.2e-141 505.0 521 52.2
C04p61670 Brassica napus HOM05D005440 ORTHO05D007314 9.3e-141 504.6 506 52.2
THA.LOC104800970 Tarenaya hassleriana HOM05D005440 ORTHO05D007314 9.3e-141 504.6 515 52.4
Gohir.A07G081000 Gossypium hirsutum HOM05D005440 ORTHO05D007314 1.2e-140 504.2 506 52.6
CARHR125970 Cardamine hirsuta HOM05D005440 ORTHO05D007314 1.6e-140 503.8 513 52.2
CANSAT64G0070 Cannabis sativa HOM05D005440 ORTHO05D007314 2.7e-140 503.1 514 52.9
Gohir.D07G086600 Gossypium hirsutum HOM05D005440 ORTHO05D007314 2.7e-140 503.1 511 52.4
Sp4g14550 Schrenkiella parvula HOM05D005440 ORTHO05D007314 2.7e-140 503.1 506 53.4
PSO675G6996 Papaver somniferum HOM05D005440 ORTHO05D007314 3.6e-140 502.7 510 53.7
Prupe.3G188100 Prunus persica HOM05D005440 ORTHO05D007314 3.6e-140 502.7 509 52.3
Atru.chr5.954 Acer truncatum HOM05D005440 ORTHO05D007314 7.9e-140 501.5 506 51.8
Sed0022130 Sechium edule HOM05D005440 ORTHO05D007314 2.3e-139 500.0 510 53.3
HPP92_001868 Vanilla planifolia HOM05D005440 ORTHO05D007314 2.3e-139 500.0 514 52.1
HanXRQChr15g0468881 Helianthus annuus HOM05D005440 ORTHO05D007314 5.1e-139 498.8 505 52.9
MSTRG.15262 Avicennia marina HOM05D005440 ORTHO05D007314 6.7e-139 498.4 517 52.2
Os05g0511300 Oryza sativa ssp. japonica HOM05D005440 ORTHO05D007314 8.8e-139 498.0 506 51.2
CiPaw.04G136100 Carya illinoinensis HOM05D005440 ORTHO05D007314 1.5e-138 497.3 519 51.3
Lj6g0026846 Lotus japonicus HOM05D005440 ORTHO05D007314 4.3e-138 495.7 512 53.7
Manes.09G077000 Manihot esculenta HOM05D005440 ORTHO05D007314 7.4e-138 495.0 518 52.7
TWI60G0164 Tripterygium wilfordii HOM05D005440 ORTHO05D007314 8.2e-137 491.5 505 50.7
ATR0763G213 Amborella trichopoda HOM05D005440 ORTHO05D007314 1.1e-136 491.1 508 52.2
Cfa023527 Carpinus fangiana HOM05D005440 ORTHO05D007314 1.1e-136 491.1 509 51.7
BraA04t17992Z Brassica rapa HOM05D005440 ORTHO05D007314 1.4e-136 490.7 525 50.3
Duzib133G0846 Durio zibethinus HOM05D005440 ORTHO05D007314 1.4e-136 490.7 506 52.4
Zm00001eb292540 Zea mays HOM05D005440 ORTHO05D007314 3.1e-136 489.6 514 50.8
MD09G1136900 Malus domestica HOM05D005440 ORTHO05D007314 4.1e-136 489.2 522 51.5
MD17G1127100 Malus domestica HOM05D005440 ORTHO05D007314 4.1e-136 489.2 520 51.0
FAN02G0818 Fragaria x ananassa HOM05D005440 ORTHO05D007314 2.0e-135 486.9 507 51.9
FvH4_6g39770 Fragaria vesca HOM05D005440 ORTHO05D007314 3.4e-135 486.1 505 51.3
AagrBONN_evm.TU.Sc2ySwM_368.3314 Anthoceros agrestis HOM05D005440 ORTHO05D007314 4.5e-135 485.7 514 51.8
Aqoxy1G01485 Aquilegia oxysepala HOM05D005440 ORTHO05D007314 4.5e-135 485.7 502 52.2
ECA233G3205 Erigeron canadensis HOM05D005440 ORTHO05D007314 1.0e-134 484.6 505 50.3
RcHm_v2.0_Chr2g0153881 Rosa chinensis HOM05D005440 ORTHO05D007314 1.0e-134 484.6 511 52.4
Eucgr.K01335 Eucalyptus grandis HOM05D005440 ORTHO05D007314 2.9e-134 483.0 515 51.1
Cc07_g20260 Coffea canephora HOM05D005440 ORTHO05D007314 3.8e-134 482.6 507 50.9
FAN14G2598 Fragaria x ananassa HOM05D005440 ORTHO05D007314 5.0e-134 482.3 511 51.7
CSS0043590 Camellia sinensis var. sinensis HOM05D005440 ORTHO05D007314 1.0e-131 474.6 512 51.0
Migut.L00575 Erythranthe guttata HOM05D005440 ORTHO05D007314 1.1e-130 471.1 493 51.1
Rhsim12G0014000 Rhododendron simsii HOM05D005440 ORTHO05D007314 4.8e-129 465.7 477 51.6
Sabra16G0027400 Salix brachista HOM05D005440 ORTHO05D007314 9.1e-128 461.5 511 51.1
PSO541G5910 Papaver somniferum HOM05D005440 ORTHO05D007314 2.6e-127 459.9 502 51.2
DCAR_019996 Daucus carota HOM05D005440 ORTHO05D007314 7.7e-127 458.4 505 49.1
Peaxi162Scf00525g00411 Petunia axillaris HOM05D005440 ORTHO05D007314 3.2e-125 453.0 509 49.7
Potri.016G021400 Populus trichocarpa HOM05D005440 ORTHO05D007314 2.7e-124 449.9 452 52.9
AT2G32160 Arabidopsis thaliana HOM05D005440 ORTHO05D007314 4.7e-124 449.1 508 47.6
MBI18_g10015_MAGBIO Magnolia biondii HOM05D005440 ORTHO05D007314 6.7e-123 445.3 484 50.4
TWI60G0012 Tripterygium wilfordii HOM05D005440 ORTHO05D007314 1.5e-122 444.1 514 47.7
AUR62017608 Chenopodium quinoa HOM05D005440 ORTHO05D007314 1.3e-121 441.0 506 48.4
arahy.Tifrunner.gnm1.ann1.TU4NXX Arachis hypogaea HOM05D005440 ORTHO05D007314 5.0e-118 429.1 494 49.0
Sabra16G0024900 Salix brachista HOM05D005440 ORTHO05D007314 3.2e-117 426.4 508 48.0
Actinidia12520 Actinidia chinensis HOM05D005440 ORTHO05D007314 9.4e-117 424.9 493 47.9
EL10Ac9g22859 Beta vulgaris HOM05D005440 ORTHO05D007314 1.6e-116 424.1 506 47.8
unitig_32.g10657 Utricularia gibba HOM05D005440 ORTHO05D007314 2.3e-115 420.2 515 45.4
Carub.0004s1348 Capsella rubella HOM05D005440 ORTHO05D007314 4.0e-115 419.5 502 45.2
Aa31LG5G4880 Aethionema arabicum HOM05D005440 ORTHO05D007314 5.7e-114 415.6 508 47.0
CDE06G0633 Ceratophyllum demersum HOM05D005440 ORTHO05D007314 9.7e-114 414.8 273 71.8
Thhalv10017571m.g Eutrema salsugineum HOM05D005440 ORTHO05D007314 1.7e-113 414.1 280 70.4
vmacro08748 Vaccinium macrocarpon HOM05D005440 ORTHO05D007314 3.7e-113 412.9 506 45.5
AUR62015149 Chenopodium quinoa HOM05D005440 ORTHO05D007314 5.3e-112 409.1 529 46.1
Oeu053137.1 Olea europaea HOM05D005440 ORTHO05D007314 7.0e-112 408.7 496 48.0
QL04p060188 Quercus lobata HOM05D005440 ORTHO05D007314 8.5e-110 401.7 284 67.3
Cpa.g.sc8.301 Carica papaya HOM05D005440 ORTHO05D007314 1.5e-109 401.0 441 50.6
CBR_g29536 Chara braunii HOM05D000019 ORTHO05D000048 3.6e-108 396.4 624 38.3
SalBow5G0813 Salvia bowleyana HOM05D005440 ORTHO05D007314 1.4e-107 394.4 346 58.1
ClCG11G016720 Citrullus lanatus HOM05D005440 ORTHO05D007314 2.0e-106 390.6 521 44.7
Lsat_1_v5_gn_5_68301 Lactuca sativa HOM05D005440 ORTHO05D007314 3.7e-105 386.3 493 45.0
DCAR_009586 Daucus carota HOM05D005440 ORTHO05D007314 2.5e-101 373.6 265 67.2
Nitab4.5_0000496g0020 Nicotiana tabacum HOM05D005440 ORTHO05D007314 2.8e-100 370.2 469 45.2
FAN05G0095 Fragaria x ananassa HOM05D005440 ORTHO05D007314 4.4e-98 362.8 513 43.7
Thecc.01G171200 Theobroma cacao HOM05D005440 ORTHO05D007314 4.1e-96 356.3 402 51.2
SMO358G0560 Selaginella moellendorffii HOM05D005440 ORTHO05D007314 3.3e-93 346.7 227 70.5
Sabra06G0017100 Salix brachista HOM05D005440 ORTHO05D007314 4.7e-92 342.8 545 40.9
FAN09G4325 Fragaria x ananassa HOM05D005440 ORTHO05D007314 2.7e-87 327.0 508 40.4
Haze_13637 Corylus avellana HOM05D005440 ORTHO05D007314 7.8e-87 325.5 270 60.0
Cre03.g188950 Chlamydomonas reinhardtii HOM05D005440 ORTHO05D007314 8.0e-84 315.5 515 37.7
Dinv02983 Davidia involucrata HOM05D005440 ORTHO05D007314 6.4e-81 305.8 357 47.6
Psat5g108080 Pisum sativum HOM05D005440 ORTHO05D007314 2.3e-78 297.4 373 45.3
MCO05G304 Micromonas commoda HOM05D005440 ORTHO05D007314 1.2e-74 285.0 274 52.6
arahy.Tifrunner.gnm1.ann1.Z94T11 Arachis hypogaea HOM05D005440 ORTHO05D007314 6.6e-70 269.2 256 57.8
Sabra16G0025200 Salix brachista HOM05D005440 ORTHO05D007314 3.3e-69 266.9 508 36.2
Nitab4.5_0002704g0030 Nicotiana tabacum HOM05D005440 ORTHO05D007314 5.2e-67 259.6 447 38.3
CARHR125960 Cardamine hirsuta HOM05D005440 ORTHO05D007314 2.9e-65 253.8 196 60.7
Sabra16G0027100 Salix brachista HOM05D005440 ORTHO05D007314 5.4e-64 249.6 516 36.6
PRCOL_00002828 Prasinoderma coloniale HOM05D005440 ORTHO05D007314 7.1e-64 249.2 285 45.6
Ah.01g013380 Amaranthus hybridus HOM05D005440 ORTHO05D007314 3.8e-57 226.9 376 39.9
Cfa026418 Carpinus fangiana HOM05D005440 ORTHO05D007314 8.4e-57 225.7 288 41.3
Atru.ctg1434.11 Acer truncatum HOM05D005440 ORTHO05D007314 4.8e-52 209.9 297 40.4
SGA_v2.0_scaffold35G13960 Striga asiatica HOM05D005440 ORTHO05D007314 1.7e-49 201.4 134 69.4
Psat5g108160 Pisum sativum HOM05D005440 ORTHO05D007314 3.5e-47 193.7 131 68.7
Lj4C830T18 Lonicera japonica HOM05D005440 ORTHO05D007314 1.9e-40 171.4 114 69.3
Aqoxy1G03388 Aquilegia oxysepala HOM05D005440 ORTHO05D007314 1.1e-37 162.2 247 41.7
CARHR125950 Cardamine hirsuta HOM05D005440 ORTHO05D007314 2.9e-33 147.5 95 72.6
Hund08219 Selenicereus undatus HOM05D005440 ORTHO05D007314 1.6e-31 141.7 88 75.0
Lj4A830T38 Lonicera japonica HOM05D005440 ORTHO05D007314 2.2e-17 94.7 77 58.4
Hund08218 Selenicereus undatus HOM05D005440 ORTHO05D007314 6.5e-17 93.2 108 46.3
RcHm_v2.0_Chr2g0172691 Rosa chinensis HOM05D005440 ORTHO05D007314 1.1e-16 92.4 56 69.6
SEGI_40090 Sequoiadendron giganteum HOM05D005440 ORTHO05D034043 4.7e-15 87.0 68 55.9
CARHR125940 Cardamine hirsuta HOM05D005440 ORTHO05D034043 3.9e-14 84.0 80 45.0
RcHm_v2.0_Chr5g0059521 Rosa chinensis HOM05D005440 ORTHO05D007314 4.5e-10 70.5 41 73.2
Dinv02985 Davidia involucrata HOM05D005440 ORTHO05D034043 1.9e-08 65.1 43 65.1
CAN.G80.1 Capsicum annuum HOM05D001673 ORTHO05D022156 1.8e-06 58.5 53 52.8
CAN.G62.19 Capsicum annuum HOM05D001673 ORTHO05D013418 3.9e-06 57.4 43 67.4
CAN.G93.4 Capsicum annuum HOM05D000541 ORTHO05D000137 5.2e-06 57.0 92 39.1


User provided reference genes

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