Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c17_13600 Physcomitrium patens HOM05D001925 ORTHO05D005701 0.0e+00 1240.7 635 100.0
AagrBONN_evm.TU.Sc2ySwM_368.2511 Anthoceros agrestis HOM05D001925 ORTHO05D005701 1.8e-127 460.7 549 48.5
Mapoly0177s0008 Marchantia polymorpha HOM05D001925 ORTHO05D005701 5.5e-124 449.1 516 47.3
SMO147G0283 Selaginella moellendorffii HOM05D001925 ORTHO05D005701 5.5e-124 449.1 515 49.5
SEGI_03119 Sequoiadendron giganteum HOM05D001925 ORTHO05D005701 3.0e-114 416.8 588 42.3
MBI04_g28752_MAGBIO Magnolia biondii HOM05D001925 ORTHO05D005701 3.0e-101 373.6 520 41.5
ATR0068G004 Amborella trichopoda HOM05D001925 ORTHO05D005701 1.5e-100 371.3 519 39.9
CANSAT56G3724 Cannabis sativa HOM05D001925 ORTHO05D005701 5.8e-97 359.4 514 41.1
DCAR_007446 Daucus carota HOM05D001925 ORTHO05D005701 1.3e-96 358.2 517 41.0
TAR636G2317 Trochodendron aralioides HOM05D001925 ORTHO05D005701 2.9e-96 357.1 548 40.0
Haze_15511 Corylus avellana HOM05D001925 ORTHO05D005701 3.7e-96 356.7 552 39.9
Cfa003907 Carpinus fangiana HOM05D001925 ORTHO05D005701 8.3e-96 355.5 552 40.0
CiPaw.01G062800 Carya illinoinensis HOM05D001925 ORTHO05D005701 3.2e-95 353.6 514 39.9
Migut.B01766 Erythranthe guttata HOM05D001925 ORTHO05D005701 5.4e-95 352.8 521 39.2
Peaxi162Scf00020g00723 Petunia axillaris HOM05D001925 ORTHO05D005701 3.5e-94 350.1 525 40.4
THA.LOC104825846 Tarenaya hassleriana HOM05D001925 ORTHO05D005701 4.6e-94 349.7 518 40.2
GSVIVG01008477001 Vitis vinifera HOM05D001925 ORTHO05D005701 4.6e-94 349.7 519 39.9
Actinidia10039 Actinidia chinensis HOM05D001925 ORTHO05D005701 2.3e-93 347.4 518 40.9
ECA236G3836 Erigeron canadensis HOM05D001925 ORTHO05D005701 2.3e-93 347.4 513 39.8
Nn6g33390 Nelumbo nucifera HOM05D001925 ORTHO05D005701 2.3e-93 347.4 552 38.8
QL04p053597 Quercus lobata HOM05D001925 ORTHO05D005701 3.0e-93 347.1 507 39.8
Atru.chr5.509 Acer truncatum HOM05D001925 ORTHO05D005701 5.1e-93 346.3 546 38.5
Cpa.g.sc11.17 Carica papaya HOM05D001925 ORTHO05D005701 1.5e-92 344.7 517 39.7
Cc02_g38160 Coffea canephora HOM05D001925 ORTHO05D005701 3.3e-92 343.6 520 39.2
HanXRQChr04g0121151 Helianthus annuus HOM05D001925 ORTHO05D005701 3.3e-92 343.6 520 39.6
MD01G1065000 Malus domestica HOM05D001925 ORTHO05D005701 3.3e-92 343.6 571 38.2
Phvul.008G061800 Phaseolus vulgaris HOM05D001925 ORTHO05D005701 5.6e-92 342.8 578 38.1
VMungo1383G1901 Vigna mungo HOM05D001925 ORTHO05D005701 5.6e-92 342.8 577 38.3
arahy.Tifrunner.gnm1.ann1.69YTHK Arachis hypogaea HOM05D001925 ORTHO05D005701 1.2e-91 341.7 591 37.7
Medtr7g077840 Medicago truncatula HOM05D001925 ORTHO05D005701 1.6e-91 341.3 517 39.5
AL7G22330 Arabidopsis lyrata HOM05D001925 ORTHO05D005701 3.6e-91 340.1 520 38.7
Ca_07928_v3 Cicer arietinum L. HOM05D001925 ORTHO05D005701 6.2e-91 339.3 516 39.3
FvH4_7g14490 Fragaria vesca HOM05D001925 ORTHO05D005701 6.2e-91 339.3 513 39.8
CDE08G0676 Ceratophyllum demersum HOM05D001925 ORTHO05D005701 1.8e-90 337.8 564 36.9
Lj6A572T62 Lonicera japonica HOM05D001925 ORTHO05D005701 1.8e-90 337.8 552 38.2
Prupe.2G172000 Prunus persica HOM05D001925 ORTHO05D005701 1.8e-90 337.8 514 40.7
RcHm_v2.0_Chr2g0161261 Rosa chinensis HOM05D001925 ORTHO05D005701 1.8e-90 337.8 523 39.4
Ciclev10019660m.g Citrus clementina HOM05D001925 ORTHO05D005701 3.1e-90 337.0 561 38.7
Lj6A578T43 Lonicera japonica HOM05D001925 ORTHO05D005701 3.1e-90 337.0 552 38.0
A07p23240 Brassica napus HOM05D001925 ORTHO05D005701 6.8e-90 335.9 519 39.1
BolC6t37570H Brassica oleracea HOM05D001925 ORTHO05D005701 6.8e-90 335.9 519 39.3
BcaB02g07622 Brassica carinata HOM05D001925 ORTHO05D005701 8.9e-90 335.5 519 38.9
BraA07t29988Z Brassica rapa HOM05D001925 ORTHO05D005701 8.9e-90 335.5 519 39.1
vmacro13268 Vaccinium macrocarpon HOM05D001925 ORTHO05D005701 8.9e-90 335.5 523 39.4
BcaC08g44822 Brassica carinata HOM05D001925 ORTHO05D005701 1.5e-89 334.7 519 39.1
Eucgr.L01587 Eucalyptus grandis HOM05D001925 ORTHO05D005701 2.0e-89 334.3 515 39.6
C06p24120 Brassica napus HOM05D001925 ORTHO05D005701 2.6e-89 334.0 519 39.1
CSS0009302 Camellia sinensis var. sinensis HOM05D001925 ORTHO05D005701 2.6e-89 334.0 506 40.1
CSS0022743 Camellia sinensis var. sinensis HOM05D001925 ORTHO05D005701 2.6e-89 334.0 506 40.1
Thhalv10005869m.g Eutrema salsugineum HOM05D001925 ORTHO05D005701 2.6e-89 334.0 515 39.0
Rhsim07G0013900 Rhododendron simsii HOM05D001925 ORTHO05D005701 3.4e-89 333.6 512 39.3
RcHm_v2.0_Chr1g0355901 Rosa chinensis HOM05D001925 ORTHO05D005701 4.4e-89 333.2 515 39.6
Lj1g0000866 Lotus japonicus HOM05D001925 ORTHO05D005701 5.8e-89 332.8 507 37.7
CAN.G78.90 Capsicum annuum HOM05D001925 ORTHO05D005701 7.5e-89 332.4 523 37.9
Sabra14G0062200 Salix brachista HOM05D001925 ORTHO05D005701 7.5e-89 332.4 514 38.7
Lalb_Chr13g0304081 Lupinus albus HOM05D001925 ORTHO05D005701 3.7e-88 330.1 518 39.2
Psat4g001160 Pisum sativum HOM05D001925 ORTHO05D005701 6.4e-88 329.3 516 38.2
AT4G29910 Arabidopsis thaliana HOM05D001925 ORTHO05D005701 8.3e-88 328.9 526 38.4
arahy.Tifrunner.gnm1.ann1.9GVB5D Arachis hypogaea HOM05D001925 ORTHO05D005701 8.3e-88 328.9 519 38.0
Nitab4.5_0000583g0200 Nicotiana tabacum HOM05D001925 ORTHO05D005701 1.4e-87 328.2 529 38.2
PGR004G0833 Punica granatum HOM05D001925 ORTHO05D005701 1.4e-87 328.2 571 36.8
arahy.Tifrunner.gnm1.ann1.NC5V2N Arachis hypogaea HOM05D001925 ORTHO05D005701 1.9e-87 327.8 570 37.2
Lsat_1_v5_gn_7_4881 Lactuca sativa HOM05D001925 ORTHO05D005701 1.9e-87 327.8 512 37.5
EL10Ac1g00402 Beta vulgaris HOM05D001925 ORTHO05D005701 3.2e-87 327.0 527 38.0
ClCG06G003620 Citrullus lanatus HOM05D001925 ORTHO05D005701 3.2e-87 327.0 507 38.7
CARHR237820 Cardamine hirsuta HOM05D001925 ORTHO05D005701 4.1e-87 326.6 515 38.1
Sopen01g038540 Solanum pennellii HOM05D001925 ORTHO05D005701 4.1e-87 326.6 516 38.4
PGSC0003DMG400000174 Solanum tuberosum HOM05D001925 ORTHO05D005701 4.1e-87 326.6 516 38.6
Potri.014G085900 Populus trichocarpa HOM05D001925 ORTHO05D005701 7.1e-87 325.9 511 38.4
SGA_v2.0_scaffold4G02302 Striga asiatica HOM05D001925 ORTHO05D005701 1.2e-86 325.1 508 38.4
Sp5g05460 Schrenkiella parvula HOM05D001925 ORTHO05D005701 1.6e-86 324.7 514 37.2
Oeu015817.1 Olea europaea HOM05D001925 ORTHO05D005701 2.1e-86 324.3 521 38.0
Solyc01g094760.3 Solanum lycopersicum HOM05D001925 ORTHO05D005701 2.7e-86 323.9 516 38.2
Duzib138G1334 Durio zibethinus HOM05D001925 ORTHO05D005701 3.5e-86 323.6 511 38.0
Gohir.A11G089700 Gossypium hirsutum HOM05D001925 ORTHO05D005701 4.6e-86 323.2 556 36.5
Gorai.007G100400 Gossypium raimondii HOM05D001925 ORTHO05D005701 4.6e-86 323.2 517 37.1
Glyma.18G234000 Glycine max HOM05D001925 ORTHO05D005701 7.8e-86 322.4 577 36.9
COL.COLO4_12725 Corchorus olitorius HOM05D001925 ORTHO05D005701 5.1e-85 319.7 541 37.0
MELO3C021204.2 Cucumis melo HOM05D001925 ORTHO05D005701 5.1e-85 319.7 507 38.1
BcaB02g07621 Brassica carinata HOM05D001925 ORTHO05D005701 6.6e-85 319.3 519 38.0
Gohir.D11G094000 Gossypium hirsutum HOM05D001925 ORTHO05D005701 1.1e-84 318.5 517 36.9
TWI73G0882 Tripterygium wilfordii HOM05D001925 ORTHO05D005701 1.1e-84 318.5 518 37.1
Sed0000605 Sechium edule HOM05D001925 ORTHO05D005701 2.5e-84 317.4 509 38.9
Manes.05G033300 Manihot esculenta HOM05D001925 ORTHO05D005701 3.3e-84 317.0 515 38.4
Aqoxy2G04021 Aquilegia oxysepala HOM05D001925 ORTHO05D005701 7.3e-84 315.8 518 37.5
PSO384G0118 Papaver somniferum HOM05D001925 ORTHO05D005701 7.3e-84 315.8 519 38.9
Thecc.01G357800 Theobroma cacao HOM05D001925 ORTHO05D005701 6.2e-83 312.8 509 37.3
Nitab4.5_0006018g0050 Nicotiana tabacum HOM05D001925 ORTHO05D005701 8.9e-82 308.9 501 38.7
FAN10G1478 Fragaria x ananassa HOM05D001925 ORTHO05D005701 1.5e-81 308.1 513 37.8
FAN10G3665 Fragaria x ananassa HOM05D001925 ORTHO05D005701 2.0e-81 307.8 513 37.8
Aa31LG2G20640 Aethionema arabicum HOM05D001925 ORTHO05D005701 3.4e-81 307.0 525 36.6
Eucgr.D01236 Eucalyptus grandis HOM05D001925 ORTHO05D005701 3.4e-81 307.0 514 37.9
FAN03G1293 Fragaria x ananassa HOM05D001925 ORTHO05D005701 5.8e-81 306.2 513 37.6
Zm00001eb214490 Zea mays HOM05D001925 ORTHO05D005701 5.8e-81 306.2 521 39.5
FAN06G3551 Fragaria x ananassa HOM05D001925 ORTHO05D005701 2.9e-80 303.9 513 37.4
FAN06G1763 Fragaria x ananassa HOM05D001925 ORTHO05D005701 3.8e-80 303.5 513 37.4
SalBow3G0216 Salvia bowleyana HOM05D001925 ORTHO05D005701 8.4e-80 302.4 503 39.2
FAN01G0375 Fragaria x ananassa HOM05D001925 ORTHO05D005701 1.9e-79 301.2 514 37.4
Ah.05g180520 Amaranthus hybridus HOM05D001925 ORTHO05D001453 7.8e-78 295.8 560 34.8
Os03g0759500 Oryza sativa ssp. japonica HOM05D001925 ORTHO05D005701 1.3e-77 295.0 525 38.7
Hund16654 Selenicereus undatus HOM05D001925 ORTHO05D005701 1.5e-76 291.6 564 36.0
Lj7A511T78 Lonicera japonica HOM05D001925 ORTHO05D005701 9.6e-76 288.9 498 35.9
AUR62004371 Chenopodium quinoa HOM05D001925 ORTHO05D005701 2.4e-74 284.3 531 34.5
Glyma.09G258700 Glycine max HOM05D001925 ORTHO05D005701 3.1e-74 283.9 580 34.8
TPR.G37845 Trifolium pratense HOM05D001925 ORTHO05D005701 1.5e-73 281.6 522 35.6
AUR62022580 Chenopodium quinoa HOM05D001925 ORTHO05D005701 7.6e-73 279.3 531 34.3
Dinv43827 Davidia involucrata HOM05D001925 ORTHO05D005701 1.2e-65 255.4 411 37.7
Carub.0007s1073 Capsella rubella HOM05D001925 ORTHO05D005701 3.4e-65 253.8 440 38.0
CBR_g58810 Chara braunii HOM05D001925 ORTHO05D005701 5.4e-63 246.5 631 30.6
HPP92_019868 Vanilla planifolia HOM05D001925 ORTHO05D005701 6.0e-62 243.0 373 40.2
Carub.0002s1689 Capsella rubella HOM05D001925 ORTHO05D005701 3.9e-61 240.4 372 39.8
CsaV3_6G000620 Cucumis sativus L. HOM05D001925 ORTHO05D005701 1.9e-60 238.0 427 36.5
PSO339G3045 Papaver somniferum HOM05D001925 ORTHO05D005701 2.5e-60 237.7 511 33.9
Sc01g0003490 Simmondsia chinensis HOM05D001925 ORTHO05D005701 3.7e-59 233.8 383 37.3
arahy.Tifrunner.gnm1.ann1.IR4EKV Arachis hypogaea HOM05D001925 ORTHO05D005701 1.2e-54 218.8 339 40.7
Oeu050467.2 Olea europaea HOM05D001925 ORTHO05D005701 1.2e-49 202.2 319 37.6
BcaC07g40027 Brassica carinata HOM05D001925 ORTHO05D005701 1.1e-47 195.7 428 32.5
MCO11G226 Micromonas commoda HOM05D001925 ORTHO05D005701 3.2e-47 194.1 597 28.1
ECA236G4017 Erigeron canadensis HOM05D001925 ORTHO05D005701 6.0e-46 189.9 336 35.7
arahy.Tifrunner.gnm1.ann1.SID920 Arachis hypogaea HOM05D001925 ORTHO05D005701 1.5e-44 185.3 390 33.3
PRCOL_00005952 Prasinoderma coloniale HOM05D001925 ORTHO05D005701 2.7e-38 164.5 526 29.8
arahy.Tifrunner.gnm1.ann1.D25PMP Arachis hypogaea HOM05D001925 ORTHO05D005701 4.1e-34 150.6 388 28.1
MD07G1135400 Malus domestica HOM05D001925 ORTHO05D005701 7.7e-33 146.4 365 30.1
Potri.001G135975 Populus trichocarpa HOM05D001925 ORTHO05D005701 9.4e-31 139.4 215 36.3
C08p32440 Brassica napus HOM05D001925 ORTHO05D005701 1.8e-26 125.2 514 26.7
arahy.Tifrunner.gnm1.ann1.IM3547 Arachis hypogaea HOM05D001925 ORTHO05D005701 3.1e-26 124.4 206 35.4
BolC8t50859H Brassica oleracea HOM05D001925 ORTHO05D005701 7.0e-26 123.2 514 26.5
arahy.Tifrunner.gnm1.ann1.FEJ64N Arachis hypogaea HOM05D001925 ORTHO05D005701 9.1e-26 122.9 202 36.1
TPR.G26686 Trifolium pratense HOM05D001925 ORTHO05D005701 1.5e-25 122.1 261 32.2
Actinidia20895 Actinidia chinensis HOM05D001925 ORTHO05D005701 3.7e-19 100.9 198 34.8
Cre07.g355200 Chlamydomonas reinhardtii HOM05D001925 ORTHO05D005701 4.1e-18 97.4 573 23.7
TPR.G16202 Trifolium pratense HOM05D001925 ORTHO05D005701 4.5e-17 94.0 125 44.0
Dinv43826 Davidia involucrata HOM05D001925 ORTHO05D005701 7.7e-17 93.2 125 44.0
BraA09t40455Z Brassica rapa HOM05D001925 ORTHO05D005701 1.0e-16 92.8 181 38.7
C06p24140 Brassica napus HOM05D001925 ORTHO05D005701 9.4e-15 86.3 122 41.8
Cfa026360 Carpinus fangiana HOM05D001925 ORTHO05D005701 1.4e-13 82.4 551 24.5
A09p50040 Brassica napus HOM05D001925 ORTHO05D005701 4.0e-13 80.9 85 52.9
A09p50030 Brassica napus HOM05D001925 ORTHO05D005701 1.5e-12 79.0 99 42.4
FAN24G1219 Fragaria x ananassa HOM05D001925 ORTHO05D005701 2.6e-12 78.2 114 38.6
BcaC08g44824 Brassica carinata HOM05D001925 ORTHO05D005701 5.7e-12 77.0 122 38.5
FAN15G3430 Fragaria x ananassa HOM05D001925 ORTHO05D005701 1.2e-09 69.3 113 36.3
FvH4_2g10060 Fragaria vesca HOM05D001925 ORTHO05D005701 4.5e-09 67.4 205 28.8
Zm00001eb057980 Zea mays HOM05D001925 ORTHO05D005701 4.5e-09 67.4 225 28.4
arahy.Tifrunner.gnm1.ann1.ZHBQ27 Arachis hypogaea HOM05D002506 ORTHO05D002879 1.7e-08 65.5 99 38.4
FvH4_2g10061 Fragaria vesca HOM05D001925 ORTHO05D005701 1.1e-07 62.8 106 35.8


User provided reference genes

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