Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c17_13460 Physcomitrium patens HOM05D003744 ORTHO05D004327 2.9e-290 1001.1 496 100.0
Mapoly0100s0056 Marchantia polymorpha HOM05D003744 ORTHO05D004327 9.4e-103 378.3 323 58.8
GSVIVG01012037001 Vitis vinifera HOM05D003744 ORTHO05D004327 1.4e-101 374.4 336 56.8
AagrBONN_evm.TU.Sc2ySwM_340.154 Anthoceros agrestis HOM05D003744 ORTHO05D004327 1.8e-101 374.0 341 55.4
SMO164G0212 Selaginella moellendorffii HOM05D003744 ORTHO05D004327 8.8e-101 371.7 292 64.4
Cc04_g13930 Coffea canephora HOM05D003744 ORTHO05D004327 2.0e-100 370.5 395 52.4
PGSC0003DMG400024499 Solanum tuberosum HOM05D003744 ORTHO05D004327 3.3e-100 369.8 328 56.4
Ciclev10031746m.g Citrus clementina HOM05D003744 ORTHO05D004327 5.7e-100 369.0 304 59.9
Lj1g0013770 Lotus japonicus HOM05D003744 ORTHO05D004327 9.7e-100 368.2 305 58.0
Sc23g0003470 Simmondsia chinensis HOM05D003744 ORTHO05D004327 9.7e-100 368.2 308 57.8
PSO384G3023 Papaver somniferum HOM05D003744 ORTHO05D004327 1.3e-99 367.9 331 57.7
QL03p058539 Quercus lobata HOM05D003744 ORTHO05D004327 1.3e-99 367.9 328 55.8
THA.LOC104814817 Tarenaya hassleriana HOM05D003744 ORTHO05D004327 1.7e-99 367.5 334 56.9
PGR044G0777 Punica granatum HOM05D003744 ORTHO05D004327 2.2e-99 367.1 322 57.8
Ca_07785_v3 Cicer arietinum L. HOM05D003744 ORTHO05D004327 2.8e-99 366.7 301 59.1
QL03p042814 Quercus lobata HOM05D003744 ORTHO05D004327 3.7e-99 366.3 295 60.0
ECA233G3748 Erigeron canadensis HOM05D003744 ORTHO05D004327 4.8e-99 365.9 293 62.8
CsaV3_3G031430 Cucumis sativus L. HOM05D003744 ORTHO05D004327 8.2e-99 365.2 347 54.5
Medtr7g073970 Medicago truncatula HOM05D003744 ORTHO05D004327 1.4e-98 364.4 310 56.8
Aa31LG6G6900 Aethionema arabicum HOM05D003744 ORTHO05D004327 1.8e-98 364.0 319 57.7
AT4G23660 Arabidopsis thaliana HOM05D003744 ORTHO05D004327 1.8e-98 364.0 417 47.2
MELO3C024026.2 Cucumis melo HOM05D003744 ORTHO05D004327 1.8e-98 364.0 347 54.2
Atru.chr11.479 Acer truncatum HOM05D003744 ORTHO05D004327 2.4e-98 363.6 316 58.2
Glyma.18G216400 Glycine max HOM05D003744 ORTHO05D004327 3.1e-98 363.2 317 56.5
Manes.01G040712 Manihot esculenta HOM05D003744 ORTHO05D004327 4.1e-98 362.8 325 56.6
Sed0024199 Sechium edule HOM05D003744 ORTHO05D004327 4.1e-98 362.8 318 56.9
Lalb_Chr12g0205351 Lupinus albus HOM05D003744 ORTHO05D004327 5.3e-98 362.5 316 56.6
VMungo1383G1042 Vigna mungo HOM05D003744 ORTHO05D004327 5.3e-98 362.5 321 56.1
Cfa008732 Carpinus fangiana HOM05D003744 ORTHO05D004327 6.9e-98 362.1 331 56.8
Prupe.1G346400 Prunus persica HOM05D003744 ORTHO05D004327 6.9e-98 362.1 326 55.2
RcHm_v2.0_Chr5g0044851 Rosa chinensis HOM05D003744 ORTHO05D004327 6.9e-98 362.1 351 53.0
Aqoxy1G00571 Aquilegia oxysepala HOM05D003744 ORTHO05D004327 9.1e-98 361.7 293 61.1
CSS0044819 Camellia sinensis var. sinensis HOM05D003744 ORTHO05D004327 9.1e-98 361.7 327 57.8
Lj8A264T57 Lonicera japonica HOM05D003744 ORTHO05D004327 9.1e-98 361.7 403 50.4
CANSAT78G0298 Cannabis sativa HOM05D003744 ORTHO05D004327 1.5e-97 360.9 326 53.7
Sabra05G0077500 Salix brachista HOM05D003744 ORTHO05D004327 2.0e-97 360.5 293 60.4
Sp7g21590 Schrenkiella parvula HOM05D003744 ORTHO05D004327 2.0e-97 360.5 314 58.0
arahy.Tifrunner.gnm1.ann1.DDPE54 Arachis hypogaea HOM05D003744 ORTHO05D004327 2.6e-97 360.1 305 58.4
arahy.Tifrunner.gnm1.ann1.G2KDP7 Arachis hypogaea HOM05D003744 ORTHO05D004327 2.6e-97 360.1 305 58.4
Migut.I00018 Erythranthe guttata HOM05D003744 ORTHO05D004327 2.6e-97 360.1 328 57.0
Gohir.A12G134500 Gossypium hirsutum HOM05D003744 ORTHO05D004327 2.6e-97 360.1 302 58.6
Gorai.008G149600 Gossypium raimondii HOM05D003744 ORTHO05D004327 3.4e-97 359.8 302 58.6
BcaC09g50959 Brassica carinata HOM05D003744 ORTHO05D004327 4.5e-97 359.4 323 55.7
C01p18750 Brassica napus HOM05D003744 ORTHO05D004327 4.5e-97 359.4 323 55.7
Thecc.02G161400 Theobroma cacao HOM05D003744 ORTHO05D004327 4.5e-97 359.4 326 55.2
AL7G29700 Arabidopsis lyrata HOM05D003744 ORTHO05D004327 5.9e-97 359.0 307 58.0
A01p14960 Brassica napus HOM05D003744 ORTHO05D004327 5.9e-97 359.0 324 55.6
BcaNung01074 Brassica carinata HOM05D003744 ORTHO05D004327 1.3e-96 357.8 316 57.3
Phvul.008G080300 Phaseolus vulgaris HOM05D003744 ORTHO05D004327 1.3e-96 357.8 321 55.5
Prupe.4G276200 Prunus persica HOM05D003744 ORTHO05D004327 1.3e-96 357.8 326 54.6
arahy.Tifrunner.gnm1.ann1.686LQU Arachis hypogaea HOM05D003744 ORTHO05D004327 1.7e-96 357.5 305 57.7
ClCG10G011930 Citrullus lanatus HOM05D003744 ORTHO05D004327 1.7e-96 357.5 311 59.2
FvH4_4g36840 Fragaria vesca HOM05D003744 ORTHO05D004327 2.2e-96 357.1 292 59.6
Nn2g14543 Nelumbo nucifera HOM05D003744 ORTHO05D004327 2.2e-96 357.1 292 59.6
RcHm_v2.0_Chr4g0446591 Rosa chinensis HOM05D003744 ORTHO05D004327 2.9e-96 356.7 382 49.7
CiPaw.05G168300 Carya illinoinensis HOM05D003744 ORTHO05D004327 3.8e-96 356.3 314 56.7
Gohir.D12G138100 Gossypium hirsutum HOM05D003744 ORTHO05D004327 3.8e-96 356.3 302 57.9
MD15G1355200 Malus domestica HOM05D003744 ORTHO05D004327 5.0e-96 355.9 292 59.2
COL.COLO4_10100 Corchorus olitorius HOM05D003744 ORTHO05D004327 6.5e-96 355.5 323 56.0
MSTRG.11446 Avicennia marina HOM05D003744 ORTHO05D004327 8.5e-96 355.1 293 59.7
Carub.0007s1748 Capsella rubella HOM05D003744 ORTHO05D004327 1.4e-95 354.4 291 59.5
Thhalv10025345m.g Eutrema salsugineum HOM05D003744 ORTHO05D004327 1.4e-95 354.4 302 58.3
HanXRQChr11g0332851 Helianthus annuus HOM05D003744 ORTHO05D004327 2.5e-95 353.6 303 58.4
BcaNung03181 Brassica carinata HOM05D003744 ORTHO05D004327 9.4e-95 351.7 291 59.8
BcaNung03441 Brassica carinata HOM05D003744 ORTHO05D004327 1.6e-94 350.9 291 58.8
A03p54630 Brassica napus HOM05D003744 ORTHO05D004327 1.6e-94 350.9 291 59.1
C07p52950 Brassica napus HOM05D003744 ORTHO05D004327 1.6e-94 350.9 291 58.8
Dinv17603 Davidia involucrata HOM05D003744 ORTHO05D004327 2.7e-94 350.1 315 56.8
Os08g0322600 Oryza sativa ssp. japonica HOM05D003744 ORTHO05D004327 2.7e-94 350.1 323 54.2
BolC1t01805H Brassica oleracea HOM05D003744 ORTHO05D004327 6.1e-94 349.0 339 53.1
BraA01t01437Z Brassica rapa HOM05D003744 ORTHO05D004327 6.1e-94 349.0 339 53.1
Aa31LG9G10990 Aethionema arabicum HOM05D003744 ORTHO05D004327 1.8e-93 347.4 317 54.6
EL10Ac7g17368 Beta vulgaris HOM05D003744 ORTHO05D004327 1.8e-93 347.4 324 54.3
Prupe.1G346500 Prunus persica HOM05D003744 ORTHO05D004327 2.3e-93 347.1 331 52.0
Ah.15g093700 Amaranthus hybridus HOM05D003744 ORTHO05D004327 8.8e-93 345.1 272 62.5
Rhsim09G0044700 Rhododendron simsii HOM05D003744 ORTHO05D004327 2.6e-92 343.6 275 62.2
vmacro07295 Vaccinium macrocarpon HOM05D003744 ORTHO05D004327 4.4e-92 342.8 310 56.8
RhsimUnG0157000 Rhododendron simsii HOM05D003744 ORTHO05D004327 1.3e-91 341.3 275 62.2
BolC7t45794H Brassica oleracea HOM05D003744 ORTHO05D004327 1.1e-90 338.2 307 55.4
Solyc03g114300.4 Solanum lycopersicum HOM05D003744 ORTHO05D004327 1.4e-90 337.8 314 55.4
Lsat_1_v5_gn_6_17921 Lactuca sativa HOM05D003744 ORTHO05D004327 2.4e-90 337.0 293 59.0
Potri.005G093600 Populus trichocarpa HOM05D003744 ORTHO05D004327 3.5e-89 333.2 305 53.4
Haze_11743 Corylus avellana HOM05D003744 ORTHO05D004327 1.0e-88 331.6 294 57.5
AUR62036656 Chenopodium quinoa HOM05D003744 ORTHO05D004327 1.7e-88 330.9 308 55.8
MD11G1112600 Malus domestica HOM05D003744 ORTHO05D004327 2.5e-87 327.0 333 49.8
Os08g0388900 Oryza sativa ssp. japonica HOM05D003744 ORTHO05D004327 9.4e-87 325.1 293 55.3
BraA03t14530Z Brassica rapa HOM05D003744 ORTHO05D004327 1.0e-85 321.6 275 57.5
ATR1100G008 Amborella trichopoda HOM05D003744 ORTHO05D004327 4.0e-85 319.7 313 52.4
Duzib132G0191 Durio zibethinus HOM05D003744 ORTHO05D004327 1.2e-84 318.2 308 53.6
TAR374G0876 Trochodendron aralioides HOM05D003744 ORTHO05D004327 9.7e-84 315.1 262 61.5
Thecc.02G176000 Theobroma cacao HOM05D003744 ORTHO05D004327 2.2e-83 313.9 292 53.8
arahy.Tifrunner.gnm1.ann1.Z9T1G4 Arachis hypogaea HOM05D003744 ORTHO05D004327 2.8e-83 313.5 274 58.0
Zm00001eb190740 Zea mays HOM05D003744 ORTHO05D004327 2.4e-82 310.5 294 53.4
PSO170G1927 Papaver somniferum HOM05D003744 ORTHO05D004327 3.1e-82 310.1 339 47.8
SalBow1G2569 Salvia bowleyana HOM05D003744 ORTHO05D004327 3.1e-82 310.1 323 50.8
CAN.G781.16 Capsicum annuum HOM05D003744 ORTHO05D004327 2.9e-80 303.5 258 58.1
CDE05G3331 Ceratophyllum demersum HOM05D003744 ORTHO05D004327 5.0e-80 302.8 268 56.0
arahy.Tifrunner.gnm1.ann1.KM1SID Arachis hypogaea HOM05D003744 ORTHO05D004327 8.5e-80 302.0 248 60.5
Duzib132G0180 Durio zibethinus HOM05D003744 ORTHO05D004327 1.1e-79 301.6 331 49.5
MD11G1112700 Malus domestica HOM05D003744 ORTHO05D004327 1.1e-79 301.6 301 50.8
Gohir.A12G137600 Gossypium hirsutum HOM05D003744 ORTHO05D004327 6.1e-78 295.8 315 48.9
TWI53G1840 Tripterygium wilfordii HOM05D003744 ORTHO05D004327 1.8e-77 294.3 279 53.8
Gorai.008G153000 Gossypium raimondii HOM05D003744 ORTHO05D004327 2.3e-77 293.9 329 48.0
unitig_52.g17488 Utricularia gibba HOM05D003744 ORTHO05D004327 1.5e-76 291.2 309 53.4
Gohir.D12G141600 Gossypium hirsutum HOM05D003744 ORTHO05D004327 4.4e-76 289.7 315 48.3
DCAR_026464 Daucus carota HOM05D003744 ORTHO05D004327 5.7e-76 289.3 243 58.8
TWI53G1336 Tripterygium wilfordii HOM05D003744 ORTHO05D004327 3.7e-75 286.6 241 58.5
DCAR_029703 Daucus carota HOM05D003744 ORTHO05D004327 8.3e-75 285.4 243 58.0
Nitab4.5_0005862g0050 Nicotiana tabacum HOM05D003744 ORTHO05D004327 1.1e-74 285.0 359 47.1
Aqoxy5G02199 Aquilegia oxysepala HOM05D003744 ORTHO05D004327 1.4e-74 284.6 241 59.3
Aqoxy94s001 Aquilegia oxysepala HOM05D003744 ORTHO05D004327 1.4e-74 284.6 241 59.3
Aqoxy94s003 Aquilegia oxysepala HOM05D003744 ORTHO05D004327 1.4e-74 284.6 241 59.3
Gohir.A12G137650 Gossypium hirsutum HOM05D003744 ORTHO05D004327 3.1e-74 283.5 315 47.9
Sed0012155 Sechium edule HOM05D003744 ORTHO05D004327 3.1e-74 283.5 298 52.3
Peaxi162Scf00017g02835 Petunia axillaris HOM05D003744 ORTHO05D004327 3.5e-73 280.0 363 44.4
Nitab4.5_0000852g0010 Nicotiana tabacum HOM05D003744 ORTHO05D004327 1.3e-72 278.1 311 49.2
AUR62034614 Chenopodium quinoa HOM05D003744 ORTHO05D004327 1.6e-70 271.2 236 58.9
SalBow1G6149 Salvia bowleyana HOM05D003744 ORTHO05D004327 3.0e-69 266.9 287 48.8
Cre06.g291800 Chlamydomonas reinhardtii HOM05D003744 ORTHO05D004327 8.9e-69 265.4 310 45.8
MCO12G284 Micromonas commoda HOM05D003744 ORTHO05D004327 2.4e-66 257.3 332 45.8
Cc04_g13880 Coffea canephora HOM05D003744 ORTHO05D004327 1.2e-65 255.0 293 44.0
BcaB03g12405 Brassica carinata HOM05D003744 ORTHO05D004327 5.9e-65 252.7 256 52.7
SGA_v2.0_scaffold90G27943 Striga asiatica HOM05D003744 ORTHO05D004327 1.3e-64 251.5 254 54.3
FAN17G0528 Fragaria x ananassa HOM05D003744 ORTHO05D004327 1.0e-61 241.9 267 50.2
Eucgr.G01369 Eucalyptus grandis HOM05D003744 ORTHO05D004327 4.0e-61 240.0 267 49.4
QL08p053649 Quercus lobata HOM05D003744 ORTHO05D004327 2.0e-60 237.7 213 55.9
Potri.005G093700 Populus trichocarpa HOM05D003744 ORTHO05D004327 2.4e-58 230.7 194 57.7
Medtr3g111660 Medicago truncatula HOM05D003744 ORTHO05D004327 1.7e-56 224.6 231 53.2
RcHm_v2.0_Chr5g0044921 Rosa chinensis HOM05D003744 ORTHO05D004327 1.1e-55 221.9 212 52.8
Lj2g0000279 Lotus japonicus HOM05D003744 ORTHO05D004327 1.2e-49 201.8 213 50.2
BcaC01g00486 Brassica carinata HOM05D003744 ORTHO05D004327 2.0e-49 201.1 296 40.2
Sopen03g033400 Solanum pennellii HOM05D003744 ORTHO05D004327 2.0e-49 201.1 158 62.0
CBR_g5669 Chara braunii HOM05D003744 ORTHO05D004327 4.6e-49 199.9 215 50.7
FAN07G0518 Fragaria x ananassa HOM05D003744 ORTHO05D004327 6.0e-49 199.5 173 60.1
Haze_26705 Corylus avellana HOM05D003744 ORTHO05D004327 3.0e-48 197.2 283 37.8
CARHR231030 Cardamine hirsuta HOM05D003744 ORTHO05D004327 1.5e-47 194.9 194 53.1
TPR.G24330 Trifolium pratense HOM05D003744 ORTHO05D004327 4.3e-47 193.4 122 73.8
Oeu024760.1 Olea europaea HOM05D003744 ORTHO05D004327 7.3e-47 192.6 154 61.7
PRCOL_00006084 Prasinoderma coloniale HOM05D003744 ORTHO05D004327 2.1e-46 191.0 284 40.5
Os08g0389300 Oryza sativa ssp. japonica HOM05D003744 ORTHO05D004327 2.8e-46 190.7 202 48.5
TPR.G35100 Trifolium pratense HOM05D003744 ORTHO05D004327 2.8e-46 190.7 129 66.7
Hund23867 Selenicereus undatus HOM05D003744 ORTHO05D004327 1.4e-45 188.3 121 71.1
Eucgr.H03234 Eucalyptus grandis HOM05D003744 ORTHO05D004327 2.3e-45 187.6 132 65.9
arahy.Tifrunner.gnm1.ann1.1L5CCL Arachis hypogaea HOM05D003744 ORTHO05D004327 2.6e-44 184.1 132 63.6
TAR374G1448 Trochodendron aralioides HOM05D003744 ORTHO05D004327 7.5e-44 182.6 162 57.4
CBR_g4211 Chara braunii HOM05D003744 ORTHO05D004327 7.1e-42 176.0 120 69.2
HPP92_014779 Vanilla planifolia HOM05D003744 ORTHO05D004327 7.1e-42 176.0 130 60.8
SHI31057 Sapria himalayana HOM05D000482 ORTHO05D000349 1.6e-41 174.9 208 47.1
Lj1g0011441 Lotus japonicus HOM05D003744 ORTHO05D004327 1.0e-40 172.2 129 61.2
Cpa.g.sc5.31 Carica papaya HOM05D003744 ORTHO05D004327 1.2e-38 165.2 173 53.2
SEGI_31034 Sequoiadendron giganteum HOM05D003744 ORTHO05D004327 1.2e-38 165.2 109 69.7
A08p21950 Brassica napus HOM05D003744 ORTHO05D004327 1.6e-38 164.9 121 63.6
Cc00_g30150 Coffea canephora HOM05D003744 ORTHO05D004327 2.6e-36 157.5 130 56.2
SEGI_29356 Sequoiadendron giganteum HOM05D003744 ORTHO05D004327 4.4e-36 156.8 245 40.8
TAR374G1156 Trochodendron aralioides HOM05D003744 ORTHO05D004327 3.2e-34 150.6 158 51.3
Cfa021958 Carpinus fangiana HOM05D003744 ORTHO05D004327 2.7e-33 147.5 298 33.9
Cc04_g15800 Coffea canephora HOM05D003744 ORTHO05D004327 6.0e-33 146.4 161 45.3
Gohir.A12G137450 Gossypium hirsutum HOM05D003744 ORTHO05D004327 5.6e-31 139.8 147 49.7
SEGI_19125 Sequoiadendron giganteum HOM05D003744 ORTHO05D004327 9.6e-31 139.0 147 52.4
Cc00_g32230 Coffea canephora HOM05D003744 ORTHO05D004327 1.8e-29 134.8 146 45.9
FAN12G4043 Fragaria x ananassa HOM05D003744 ORTHO05D004327 4.0e-29 133.7 81 74.1
MD16G1001300 Malus domestica HOM05D003744 ORTHO05D004327 1.5e-28 131.7 125 54.4
QL08p053645 Quercus lobata HOM05D003744 ORTHO05D004327 2.6e-28 131.0 120 52.5
SEGI_11824 Sequoiadendron giganteum HOM05D003744 ORTHO05D004327 6.6e-24 116.3 71 80.3
Cc04_g13890 Coffea canephora HOM05D003744 ORTHO05D004327 4.3e-23 113.6 109 50.5
C03p80510 Brassica napus HOM05D003744 ORTHO05D004327 2.8e-22 110.9 159 44.0
TAR374G0013 Trochodendron aralioides HOM05D003744 ORTHO05D004327 2.2e-19 101.3 81 59.3
Lalb_Chr12g0204281 Lupinus albus HOM05D003744 ORTHO05D004327 1.9e-18 98.2 94 54.3
TPR.G23229 Trifolium pratense HOM05D003744 ORTHO05D004327 1.5e-12 78.6 52 61.5
Lalb_Chr12g0204291 Lupinus albus HOM05D003744 ORTHO05D004327 1.7e-11 75.1 72 50.0
RcHm_v2.0_Chr5g0044931 Rosa chinensis HOM05D003744 ORTHO05D004327 2.9e-11 74.3 44 70.5
Aqoxy5G00880 Aquilegia oxysepala HOM05D003744 ORTHO05D004327 4.2e-10 70.5 57 61.4
Glyma.09G272651 Glycine max HOM05D003744 ORTHO05D004327 7.1e-10 69.7 87 42.5
RcHm_v2.0_Chr5g0044971 Rosa chinensis HOM05D003744 ORTHO05D004327 7.1e-10 69.7 52 67.3
DCAR_026463 Daucus carota HOM05D003744 ORTHO05D004327 9.3e-10 69.3 61 52.5
BolC3t20296H Brassica oleracea HOM05D003744 ORTHO05D004327 4.6e-09 67.0 82 40.2
Migut.H00604 Erythranthe guttata HOM05D003744 ORTHO05D004327 1.3e-08 65.5 54 55.6
Migut.N01582 Erythranthe guttata HOM05D003744 ORTHO05D004327 5.1e-08 63.5 68 51.5
Cpa.g.sc5.29 Carica papaya HOM05D003744 ORTHO05D004327 1.3e-06 58.9 65 46.2
Lsat_1_v5_gn_8_101501 Lactuca sativa HOM05D004241 ORTHO05D006031 2.1e-06 58.2 242 27.3
CARHR161450 Cardamine hirsuta HOM05D004241 ORTHO05D006031 3.7e-06 57.4 310 26.1
C03p80520 Brassica napus HOM05D003744 ORTHO05D004327 6.2e-06 56.6 48 50.0


User provided reference genes

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