Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c17_12880 Physcomitrium patens HOM05D027854 ORTHO05D000088 0.0e+00 1334.7 677 100.0
Pp3c7_12680 Physcomitrium patens HOM05D000838 ORTHO05D000656 9.7e-18 96.3 192 34.4
SEGI_02416 Sequoiadendron giganteum HOM05D000823 ORTHO05D000088 2.0e-15 88.6 237 30.8
SEGI_28063 Sequoiadendron giganteum HOM05D000823 ORTHO05D000088 2.6e-15 88.2 132 39.4
Pp3c19_19230 Physcomitrium patens HOM05D000838 ORTHO05D000656 1.3e-14 85.9 150 38.0
Pp3c7_26690 Physcomitrium patens HOM05D000395 ORTHO05D000088 1.3e-14 85.9 185 33.5
SEGI_06639 Sequoiadendron giganteum HOM05D000823 ORTHO05D000088 1.3e-14 85.9 130 39.2
SEGI_23984 Sequoiadendron giganteum HOM05D000823 ORTHO05D000088 1.7e-14 85.5 152 36.2
Pp3c17_16170 Physcomitrium patens HOM05D000823 ORTHO05D000088 2.2e-14 85.1 183 32.2
SEGI_13790 Sequoiadendron giganteum HOM05D000395 ORTHO05D000088 2.2e-14 85.1 260 28.1
SEGI_12498 Sequoiadendron giganteum HOM05D000823 ORTHO05D000088 1.9e-13 82.0 170 31.2
Pp3c1_15410 Physcomitrium patens HOM05D000838 ORTHO05D000088 2.5e-13 81.6 150 37.3
Pp3c22_9950 Physcomitrium patens HOM05D000838 ORTHO05D000656 3.2e-13 81.3 165 35.8
Os11g0197600 Oryza sativa ssp. japonica HOM05D000823 ORTHO05D000088 4.2e-13 80.9 130 38.5
SEGI_17863 Sequoiadendron giganteum HOM05D000823 ORTHO05D000088 2.1e-12 78.6 130 36.9
SEGI_33530 Sequoiadendron giganteum HOM05D000823 ORTHO05D000088 3.6e-12 77.8 194 30.4
Pp3c14_21500 Physcomitrium patens HOM05D000838 ORTHO05D000656 1.4e-11 75.9 230 28.7
ATR1132G056 Amborella trichopoda HOM05D000823 ORTHO05D000088 3.0e-11 74.7 129 33.3
Pp3c22_20610 Physcomitrium patens HOM05D000823 ORTHO05D311526 3.9e-11 74.3 143 29.4
ATR1120G190 Amborella trichopoda HOM05D000823 ORTHO05D000088 1.1e-10 72.8 136 34.6
Zm00001eb168870 Zea mays HOM05D000823 ORTHO05D000088 1.5e-10 72.4 132 37.1
AUR62042926 Chenopodium quinoa HOM05D000395 ORTHO05D000088 3.3e-10 71.2 124 36.3
Pp3c17_1930 Physcomitrium patens HOM05D017831 ORTHO05D000088 9.7e-10 69.7 151 33.8
Cpa.g.sc64.16 Carica papaya HOM05D000823 ORTHO05D000088 1.3e-09 69.3 133 33.8
MBI16_g26331_MAGBIO Magnolia biondii HOM05D000395 ORTHO05D000088 1.3e-09 69.3 133 36.1
AUR62016449 Chenopodium quinoa HOM05D000395 ORTHO05D000088 2.8e-09 68.2 146 34.9
TAR628G1113 Trochodendron aralioides HOM05D000395 ORTHO05D000088 2.8e-09 68.2 130 34.6
VMungo0235G0001 Vigna mungo HOM05D000823 ORTHO05D000088 4.8e-09 67.4 172 30.8
Ciclev10001063m.g Citrus clementina HOM05D000823 ORTHO05D000088 1.1e-08 66.2 146 33.6
Aqoxy6G00282 Aquilegia oxysepala HOM05D000823 ORTHO05D000088 1.4e-08 65.9 210 27.6
AagrBONN_evm.TU.Sc2ySwM_362.2838 Anthoceros agrestis HOM05D000838 ORTHO05D000656 1.8e-08 65.5 114 37.7
Pp3c10_22250 Physcomitrium patens HOM05D027854 ORTHO05D000088 1.8e-08 65.5 633 19.9
ATR0665G295 Amborella trichopoda HOM05D000823 ORTHO05D000088 3.1e-08 64.7 139 33.1
Lalb_Chr24g0399131 Lupinus albus HOM05D000823 ORTHO05D000088 4.1e-08 64.3 149 33.6
Nn6g32138 Nelumbo nucifera HOM05D000823 ORTHO05D000088 4.1e-08 64.3 136 32.4
COL.COLO4_26424 Corchorus olitorius HOM05D000823 ORTHO05D000088 5.3e-08 63.9 113 35.4
QL01p023780 Quercus lobata HOM05D000838 ORTHO05D000656 5.3e-08 63.9 133 30.8
AUR62003315 Chenopodium quinoa HOM05D000002 ORTHO05D000001 7.0e-08 63.5 194 29.9
Ah.06g191730 Amaranthus hybridus HOM05D000823 ORTHO05D000088 9.1e-08 63.2 144 30.6
Nn5g29400 Nelumbo nucifera HOM05D000823 ORTHO05D000088 9.1e-08 63.2 192 30.7
TWI56G0706 Tripterygium wilfordii HOM05D000823 ORTHO05D000088 1.2e-07 62.8 265 26.0
vmacro21581 Vaccinium macrocarpon HOM05D000823 ORTHO05D000088 1.2e-07 62.8 133 33.1
Aqoxy1G01711_Aqoxy1G01712 Aquilegia oxysepala HOM05D000823 ORTHO05D000088 1.6e-07 62.4 141 30.5
Rhsim06G0040900 Rhododendron simsii HOM05D000823 ORTHO05D000088 1.6e-07 62.4 133 32.3
Pp3c9_21470 Physcomitrium patens HOM05D000823 ORTHO05D006479 2.0e-07 62.0 117 27.4
Lalb_Chr22g0355291 Lupinus albus HOM05D000823 ORTHO05D000088 2.6e-07 61.6 133 33.1
MBI16_g19884_MAGBIO Magnolia biondii HOM05D000823 ORTHO05D000088 2.6e-07 61.6 133 33.1
EL10Ac4g08958 Beta vulgaris HOM05D000823 ORTHO05D000088 3.5e-07 61.2 137 32.8
CANSAT54G1365 Cannabis sativa HOM05D000838 ORTHO05D000656 3.5e-07 61.2 137 29.9
TWI09G0341 Tripterygium wilfordii HOM05D000395 ORTHO05D000088 3.5e-07 61.2 127 36.2
Eucgr.F00044 Eucalyptus grandis HOM05D000823 ORTHO05D000088 4.5e-07 60.8 243 25.9
Thecc.01G047200 Theobroma cacao HOM05D000395 ORTHO05D000088 4.5e-07 60.8 148 29.1
Ah.02g128410 Amaranthus hybridus HOM05D000823 ORTHO05D000088 1.0e-06 59.7 136 32.4
Medtr1g021320 Medicago truncatula HOM05D000823 ORTHO05D000088 1.3e-06 59.3 82 37.8
TAR376G0237 Trochodendron aralioides HOM05D000823 ORTHO05D000088 1.3e-06 59.3 139 30.9
Actinidia15278 Actinidia chinensis HOM05D000823 ORTHO05D000088 1.7e-06 58.9 135 29.6
QL02p006454 Quercus lobata HOM05D000823 ORTHO05D000088 1.7e-06 58.9 132 31.1
Hund19663 Selenicereus undatus HOM05D000823 ORTHO05D000088 1.7e-06 58.9 191 27.2
Ah.06g191720 Amaranthus hybridus HOM05D000823 ORTHO05D000088 2.2e-06 58.5 144 28.5
arahy.Tifrunner.gnm1.ann1.ZQ919F Arachis hypogaea HOM05D000838 ORTHO05D000656 2.2e-06 58.5 163 25.8
Os01g0723500 Oryza sativa ssp. japonica HOM05D000823 ORTHO05D000088 2.2e-06 58.5 130 33.1
PSO675G3266 Papaver somniferum HOM05D000395 ORTHO05D000088 2.2e-06 58.5 119 37.8
Ah.02g128420 Amaranthus hybridus HOM05D000823 ORTHO05D000088 2.9e-06 58.2 138 31.9
PSO541G5266 Papaver somniferum HOM05D000395 ORTHO05D000088 2.9e-06 58.2 117 33.3
AL8G34380 Arabidopsis lyrata HOM05D000838 ORTHO05D000656 3.8e-06 57.8 110 33.6
CSS0021571 Camellia sinensis var. sinensis HOM05D000395 ORTHO05D000088 3.8e-06 57.8 124 33.9
Lalb_Chr14g0368921 Lupinus albus HOM05D000823 ORTHO05D000088 3.8e-06 57.8 205 28.8
AUR62008541 Chenopodium quinoa HOM05D000823 ORTHO05D000088 5.0e-06 57.4 154 31.8
Phvul.008G244300 Phaseolus vulgaris HOM05D000838 ORTHO05D000656 5.0e-06 57.4 132 31.8
AUR62004798 Chenopodium quinoa HOM05D000823 ORTHO05D000088 6.5e-06 57.0 135 28.1
AUR62039040 Chenopodium quinoa HOM05D000823 ORTHO05D000088 6.5e-06 57.0 209 27.3
Gohir.A12G067300 Gossypium hirsutum HOM05D000395 ORTHO05D000088 6.5e-06 57.0 156 28.8
Lalb_Chr17g0345691 Lupinus albus HOM05D000838 ORTHO05D000656 6.5e-06 57.0 114 29.8
PSO017G7380 Papaver somniferum HOM05D000395 ORTHO05D000088 6.5e-06 57.0 120 30.8
PSO339G4062 Papaver somniferum HOM05D000395 ORTHO05D000088 6.5e-06 57.0 171 29.2
Pp3c22_2550 Physcomitrium patens HOM05D000838 ORTHO05D000656 6.5e-06 57.0 180 24.4
Potri.004G147000 Populus trichocarpa HOM05D000395 ORTHO05D000088 6.5e-06 57.0 127 32.3
Aqoxy1G00851 Aquilegia oxysepala HOM05D000823 ORTHO05D000088 8.5e-06 56.6 138 29.7
Duzib147G0434 Durio zibethinus HOM05D000395 ORTHO05D000088 8.5e-06 56.6 146 27.4


User provided reference genes

Program Settings